data_2CSS # _entry.id 2CSS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CSS pdb_00002css 10.2210/pdb2css/pdb RCSB RCSB024582 ? ? WWPDB D_1000024582 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002000332.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CSS _pdbx_database_status.recvd_initial_deposition_date 2005-05-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inoue, K.' 1 'Qin, X.-R.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the PDZ domain of human KIAA0340 protein' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Inoue, K.' 1 ? primary 'Qin, X.-R.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Regulating synaptic membrane exocytosis protein 1' _entity.formula_weight 12698.493 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rab3-interacting molecule 1, RIM 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL EWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL EWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002000332.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 THR n 1 10 TRP n 1 11 GLN n 1 12 PRO n 1 13 SER n 1 14 LYS n 1 15 GLU n 1 16 GLY n 1 17 ASP n 1 18 ARG n 1 19 LEU n 1 20 ILE n 1 21 GLY n 1 22 ARG n 1 23 VAL n 1 24 ILE n 1 25 LEU n 1 26 ASN n 1 27 LYS n 1 28 ARG n 1 29 THR n 1 30 THR n 1 31 MET n 1 32 PRO n 1 33 LYS n 1 34 ASP n 1 35 SER n 1 36 GLY n 1 37 ALA n 1 38 LEU n 1 39 LEU n 1 40 GLY n 1 41 LEU n 1 42 LYS n 1 43 VAL n 1 44 VAL n 1 45 GLY n 1 46 GLY n 1 47 LYS n 1 48 MET n 1 49 THR n 1 50 ASP n 1 51 LEU n 1 52 GLY n 1 53 ARG n 1 54 LEU n 1 55 GLY n 1 56 ALA n 1 57 PHE n 1 58 ILE n 1 59 THR n 1 60 LYS n 1 61 VAL n 1 62 LYS n 1 63 LYS n 1 64 GLY n 1 65 SER n 1 66 LEU n 1 67 ALA n 1 68 ASP n 1 69 VAL n 1 70 VAL n 1 71 GLY n 1 72 HIS n 1 73 LEU n 1 74 ARG n 1 75 ALA n 1 76 GLY n 1 77 ASP n 1 78 GLU n 1 79 VAL n 1 80 LEU n 1 81 GLU n 1 82 TRP n 1 83 ASN n 1 84 GLY n 1 85 LYS n 1 86 PRO n 1 87 LEU n 1 88 PRO n 1 89 GLY n 1 90 ALA n 1 91 THR n 1 92 ASN n 1 93 GLU n 1 94 GLU n 1 95 VAL n 1 96 TYR n 1 97 ASN n 1 98 ILE n 1 99 ILE n 1 100 LEU n 1 101 GLU n 1 102 SER n 1 103 LYS n 1 104 SER n 1 105 GLU n 1 106 PRO n 1 107 GLN n 1 108 VAL n 1 109 GLU n 1 110 ILE n 1 111 ILE n 1 112 VAL n 1 113 SER n 1 114 ARG n 1 115 PRO n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'KAZUSA cDNA hg01396' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040628-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIMS1_HUMAN _struct_ref.pdbx_db_accession Q86UR5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL PGATNEEVYNIILESKSEPQVEIIVSRP ; _struct_ref.pdbx_align_begin 585 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CSS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86UR5 _struct_ref_seq.db_align_beg 585 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 692 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CSS GLY A 1 ? UNP Q86UR5 ? ? 'cloning artifact' 1 1 1 2CSS SER A 2 ? UNP Q86UR5 ? ? 'cloning artifact' 2 2 1 2CSS SER A 3 ? UNP Q86UR5 ? ? 'cloning artifact' 3 3 1 2CSS GLY A 4 ? UNP Q86UR5 ? ? 'cloning artifact' 4 4 1 2CSS SER A 5 ? UNP Q86UR5 ? ? 'cloning artifact' 5 5 1 2CSS SER A 6 ? UNP Q86UR5 ? ? 'cloning artifact' 6 6 1 2CSS GLY A 7 ? UNP Q86UR5 ? ? 'cloning artifact' 7 7 1 2CSS SER A 116 ? UNP Q86UR5 ? ? 'cloning artifact' 116 8 1 2CSS GLY A 117 ? UNP Q86UR5 ? ? 'cloning artifact' 117 9 1 2CSS PRO A 118 ? UNP Q86UR5 ? ? 'cloning artifact' 118 10 1 2CSS SER A 119 ? UNP Q86UR5 ? ? 'cloning artifact' 119 11 1 2CSS SER A 120 ? UNP Q86UR5 ? ? 'cloning artifact' 120 12 1 2CSS GLY A 121 ? UNP Q86UR5 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.33mM U-15N,13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2CSS _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CSS _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CSS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9296 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2CSS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CSS _struct.title 'Solution structure of the PDZ domain of human KIAA0340 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CSS _struct_keywords.pdbx_keywords ENDOCYTOSIS/EXOCYTOSIS _struct_keywords.text ;PDZ domain, Regulating synaptic membrane exocytosis protein 1, Rab3-interacting molecule 1, RIM 1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ENDOCYTOSIS-EXOCYTOSIS COMPLEX ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 65 ? VAL A 70 ? SER A 65 VAL A 70 1 ? 6 HELX_P HELX_P2 2 THR A 91 ? SER A 102 ? THR A 91 SER A 102 1 ? 12 HELX_P HELX_P3 3 LYS A 103 ? GLU A 105 ? LYS A 103 GLU A 105 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 7 ? PRO A 12 ? GLY A 7 PRO A 12 A 2 LEU A 19 ? LEU A 25 ? LEU A 19 LEU A 25 A 3 VAL A 108 ? ARG A 114 ? VAL A 108 ARG A 114 A 4 GLU A 78 ? TRP A 82 ? GLU A 78 TRP A 82 A 5 LEU A 54 ? VAL A 61 ? LEU A 54 VAL A 61 A 6 LEU A 41 ? MET A 48 ? LEU A 41 MET A 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 9 ? N THR A 9 O ARG A 22 ? O ARG A 22 A 2 3 N VAL A 23 ? N VAL A 23 O ILE A 110 ? O ILE A 110 A 3 4 O ILE A 111 ? O ILE A 111 N GLU A 81 ? N GLU A 81 A 4 5 O VAL A 79 ? O VAL A 79 N ALA A 56 ? N ALA A 56 A 5 6 O THR A 59 ? O THR A 59 N LYS A 42 ? N LYS A 42 # _database_PDB_matrix.entry_id 2CSS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CSS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 31 ? ? -34.99 141.69 2 1 LEU A 41 ? ? -174.91 149.55 3 1 PRO A 86 ? ? -69.75 99.49 4 1 PRO A 115 ? ? -69.79 97.00 5 1 SER A 116 ? ? -36.66 114.59 6 2 MET A 31 ? ? -35.45 130.18 7 2 ASP A 34 ? ? -57.80 93.96 8 2 ALA A 37 ? ? 74.18 30.71 9 2 HIS A 72 ? ? 48.37 29.16 10 2 VAL A 79 ? ? -60.27 98.37 11 2 ASN A 83 ? ? 75.11 31.18 12 2 PRO A 86 ? ? -69.71 99.10 13 2 PRO A 115 ? ? -69.79 83.85 14 2 SER A 116 ? ? -35.93 118.21 15 2 PRO A 118 ? ? -69.82 -177.79 16 2 SER A 119 ? ? -44.11 156.26 17 3 ARG A 28 ? ? -130.29 -32.22 18 3 MET A 31 ? ? -34.38 129.96 19 3 ASP A 34 ? ? -54.36 86.56 20 3 VAL A 79 ? ? -62.37 86.33 21 3 ASN A 83 ? ? 74.12 38.21 22 3 PRO A 86 ? ? -69.75 99.07 23 4 SER A 3 ? ? 36.06 43.37 24 4 MET A 31 ? ? -38.25 157.64 25 4 VAL A 79 ? ? -62.88 99.14 26 4 PRO A 86 ? ? -69.73 99.04 27 5 THR A 30 ? ? -45.61 -78.08 28 5 LEU A 38 ? ? -53.53 104.64 29 5 PRO A 86 ? ? -69.75 99.77 30 6 MET A 31 ? ? -38.71 140.73 31 6 ASP A 34 ? ? -35.09 -32.01 32 6 LEU A 38 ? ? -57.02 92.12 33 6 LEU A 39 ? ? -33.96 -34.17 34 6 VAL A 79 ? ? -58.91 101.85 35 6 ASN A 83 ? ? 73.83 31.25 36 6 PRO A 86 ? ? -69.77 97.72 37 7 ARG A 28 ? ? -121.58 -57.13 38 7 MET A 31 ? ? -39.22 137.40 39 7 VAL A 79 ? ? -61.01 86.01 40 7 ASN A 83 ? ? 73.24 35.43 41 7 PRO A 86 ? ? -69.73 98.67 42 7 PRO A 118 ? ? -69.74 80.34 43 7 SER A 120 ? ? -41.90 151.43 44 8 ARG A 28 ? ? -92.48 -75.50 45 8 THR A 30 ? ? -33.54 -74.56 46 8 ASP A 34 ? ? -43.19 89.25 47 8 SER A 35 ? ? -132.37 -74.65 48 8 LEU A 39 ? ? 38.50 26.30 49 8 LEU A 41 ? ? -171.04 145.85 50 8 VAL A 79 ? ? -62.23 97.15 51 8 ASN A 83 ? ? 74.84 35.80 52 8 PRO A 86 ? ? -69.75 97.69 53 8 SER A 116 ? ? -38.04 114.89 54 8 PRO A 118 ? ? -69.79 88.31 55 9 MET A 31 ? ? -33.72 133.41 56 9 ASP A 34 ? ? -55.61 91.58 57 9 LEU A 41 ? ? -171.71 148.67 58 9 VAL A 79 ? ? -59.17 105.76 59 9 ASN A 83 ? ? 72.89 33.86 60 9 PRO A 118 ? ? -69.81 -177.08 61 10 SER A 6 ? ? -116.68 79.52 62 10 ARG A 28 ? ? -130.82 -34.73 63 10 LYS A 33 ? ? -79.07 44.19 64 10 ASP A 34 ? ? 38.87 54.78 65 10 LEU A 38 ? ? -44.06 97.15 66 10 VAL A 79 ? ? -56.53 101.11 67 10 ASN A 83 ? ? 74.97 32.78 68 10 PRO A 86 ? ? -69.73 99.41 69 10 PRO A 115 ? ? -69.74 96.87 70 10 SER A 116 ? ? -36.87 114.80 71 11 LYS A 14 ? ? -38.18 -38.21 72 11 MET A 31 ? ? -33.14 138.00 73 11 SER A 35 ? ? -35.99 110.84 74 11 LEU A 39 ? ? -86.36 37.17 75 11 VAL A 79 ? ? -60.42 86.41 76 11 ASN A 83 ? ? 73.73 33.70 77 11 PRO A 86 ? ? -69.72 97.48 78 11 PRO A 118 ? ? -69.83 93.06 79 11 SER A 120 ? ? -101.95 42.40 80 12 THR A 29 ? ? 31.26 45.46 81 12 ASP A 34 ? ? -83.68 -72.27 82 12 SER A 35 ? ? -117.28 78.59 83 12 VAL A 79 ? ? -68.72 98.55 84 12 ASN A 83 ? ? 74.91 32.70 85 12 PRO A 86 ? ? -69.76 98.86 86 12 PRO A 115 ? ? -69.79 99.88 87 13 THR A 29 ? ? 36.45 42.42 88 13 LYS A 33 ? ? 33.92 35.68 89 13 ASP A 34 ? ? -125.66 -52.57 90 13 SER A 35 ? ? -133.20 -32.94 91 13 LEU A 38 ? ? -34.34 132.12 92 13 LEU A 39 ? ? -94.81 49.56 93 13 VAL A 79 ? ? -61.82 95.24 94 13 ASN A 83 ? ? 75.01 34.20 95 14 LYS A 14 ? ? -37.27 -35.74 96 14 ARG A 28 ? ? -120.58 -67.94 97 14 THR A 29 ? ? -48.75 167.30 98 14 LEU A 39 ? ? -107.05 57.81 99 14 LEU A 41 ? ? -170.63 147.02 100 14 VAL A 79 ? ? -54.45 102.13 101 14 PRO A 115 ? ? -69.70 98.62 102 14 PRO A 118 ? ? -69.77 -177.56 103 15 SER A 2 ? ? -96.08 -63.35 104 15 SER A 3 ? ? -105.05 78.89 105 15 SER A 5 ? ? 35.22 43.36 106 15 SER A 6 ? ? -55.46 93.99 107 15 THR A 29 ? ? 32.66 44.93 108 15 LYS A 33 ? ? -54.39 91.68 109 15 ASP A 34 ? ? 35.01 34.62 110 15 LEU A 41 ? ? -175.45 142.63 111 15 ASP A 68 ? ? -132.30 -33.57 112 15 VAL A 79 ? ? -62.79 95.65 113 15 ASN A 83 ? ? 70.50 33.27 114 15 PRO A 86 ? ? -69.77 99.16 115 16 SER A 13 ? ? -64.19 -176.14 116 16 MET A 31 ? ? -114.58 59.33 117 16 ASP A 34 ? ? -131.46 -51.27 118 16 SER A 35 ? ? -79.21 47.75 119 16 VAL A 79 ? ? -57.91 95.90 120 16 ASN A 83 ? ? 74.94 33.59 121 16 PRO A 86 ? ? -69.78 97.78 122 16 PRO A 118 ? ? -69.72 2.38 123 17 SER A 5 ? ? -48.24 176.92 124 17 MET A 31 ? ? -112.23 65.09 125 17 LYS A 33 ? ? -57.21 81.41 126 17 ASP A 34 ? ? 34.14 48.75 127 17 ALA A 37 ? ? -115.18 50.85 128 17 LEU A 39 ? ? -95.14 54.43 129 17 VAL A 79 ? ? -62.03 97.66 130 17 ASN A 83 ? ? 72.93 35.09 131 17 PRO A 86 ? ? -69.72 99.57 132 17 PRO A 115 ? ? -69.82 95.91 133 18 MET A 31 ? ? -38.70 132.62 134 18 ASP A 34 ? ? -39.99 -36.50 135 18 SER A 35 ? ? -36.09 -37.23 136 18 LEU A 38 ? ? -50.01 102.55 137 18 LEU A 39 ? ? -39.98 -35.61 138 18 ASN A 83 ? ? 72.78 36.23 139 18 PRO A 115 ? ? -69.81 94.08 140 18 SER A 119 ? ? -103.90 43.14 141 19 THR A 29 ? ? 39.36 53.01 142 19 ASP A 34 ? ? -175.62 129.65 143 19 SER A 35 ? ? 74.95 33.67 144 19 LEU A 38 ? ? -34.49 116.30 145 19 VAL A 79 ? ? -55.82 103.20 146 19 ASN A 83 ? ? 74.64 35.98 147 19 PRO A 86 ? ? -69.80 98.22 148 19 PRO A 115 ? ? -69.69 85.26 149 19 SER A 116 ? ? -36.22 115.54 150 19 SER A 119 ? ? -54.70 106.50 151 20 THR A 29 ? ? 26.64 51.61 152 20 LYS A 33 ? ? -55.86 81.27 153 20 ASP A 34 ? ? 33.09 41.04 154 20 LEU A 38 ? ? -37.55 105.17 155 20 VAL A 79 ? ? -66.24 92.79 156 20 ASN A 83 ? ? 70.43 34.77 157 20 PRO A 86 ? ? -69.79 98.94 158 20 PRO A 115 ? ? -69.75 98.04 #