HEADER ENDOCYTOSIS/EXOCYTOSIS 23-MAY-05 2CSS TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN KIAA0340 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: RAB3-INTERACTING MOLECULE 1, RIM 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HG01396; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 1, RAB3- KEYWDS 2 INTERACTING MOLECULE 1, RIM 1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ENDOCYTOSIS- KEYWDS 5 EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,X.-R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CSS 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CSS 1 VERSN REVDAT 1 23-NOV-05 2CSS 0 JRNL AUTH K.INOUE,X.-R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN KIAA0340 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CSS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024582. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.33MM U-15N,13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 31 141.69 -34.99 REMARK 500 1 LEU A 41 149.55 -174.91 REMARK 500 1 PRO A 86 99.49 -69.75 REMARK 500 1 PRO A 115 97.00 -69.79 REMARK 500 1 SER A 116 114.59 -36.66 REMARK 500 2 MET A 31 130.18 -35.45 REMARK 500 2 ASP A 34 93.96 -57.80 REMARK 500 2 ALA A 37 30.71 74.18 REMARK 500 2 HIS A 72 29.16 48.37 REMARK 500 2 VAL A 79 98.37 -60.27 REMARK 500 2 ASN A 83 31.18 75.11 REMARK 500 2 PRO A 86 99.10 -69.71 REMARK 500 2 PRO A 115 83.85 -69.79 REMARK 500 2 SER A 116 118.21 -35.93 REMARK 500 2 PRO A 118 -177.79 -69.82 REMARK 500 2 SER A 119 156.26 -44.11 REMARK 500 3 ARG A 28 -32.22 -130.29 REMARK 500 3 MET A 31 129.96 -34.38 REMARK 500 3 ASP A 34 86.56 -54.36 REMARK 500 3 VAL A 79 86.33 -62.37 REMARK 500 3 ASN A 83 38.21 74.12 REMARK 500 3 PRO A 86 99.07 -69.75 REMARK 500 4 SER A 3 43.37 36.06 REMARK 500 4 MET A 31 157.64 -38.25 REMARK 500 4 VAL A 79 99.14 -62.88 REMARK 500 4 PRO A 86 99.04 -69.73 REMARK 500 5 THR A 30 -78.08 -45.61 REMARK 500 5 LEU A 38 104.64 -53.53 REMARK 500 5 PRO A 86 99.77 -69.75 REMARK 500 6 MET A 31 140.73 -38.71 REMARK 500 6 ASP A 34 -32.01 -35.09 REMARK 500 6 LEU A 38 92.12 -57.02 REMARK 500 6 LEU A 39 -34.17 -33.96 REMARK 500 6 VAL A 79 101.85 -58.91 REMARK 500 6 ASN A 83 31.25 73.83 REMARK 500 6 PRO A 86 97.72 -69.77 REMARK 500 7 ARG A 28 -57.13 -121.58 REMARK 500 7 MET A 31 137.40 -39.22 REMARK 500 7 VAL A 79 86.01 -61.01 REMARK 500 7 ASN A 83 35.43 73.24 REMARK 500 7 PRO A 86 98.67 -69.73 REMARK 500 7 PRO A 118 80.34 -69.74 REMARK 500 7 SER A 120 151.43 -41.90 REMARK 500 8 ARG A 28 -75.50 -92.48 REMARK 500 8 THR A 30 -74.56 -33.54 REMARK 500 8 ASP A 34 89.25 -43.19 REMARK 500 8 SER A 35 -74.65 -132.37 REMARK 500 8 LEU A 39 26.30 38.50 REMARK 500 8 LEU A 41 145.85 -171.04 REMARK 500 8 VAL A 79 97.15 -62.23 REMARK 500 REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000332.4 RELATED DB: TARGETDB DBREF 2CSS A 8 115 UNP Q86UR5 RIMS1_HUMAN 585 692 SEQADV 2CSS GLY A 1 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 2 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 3 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS GLY A 4 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 5 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 6 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS GLY A 7 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 116 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS GLY A 117 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS PRO A 118 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 119 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS SER A 120 UNP Q86UR5 CLONING ARTIFACT SEQADV 2CSS GLY A 121 UNP Q86UR5 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY VAL THR TRP GLN PRO SER SEQRES 2 A 121 LYS GLU GLY ASP ARG LEU ILE GLY ARG VAL ILE LEU ASN SEQRES 3 A 121 LYS ARG THR THR MET PRO LYS ASP SER GLY ALA LEU LEU SEQRES 4 A 121 GLY LEU LYS VAL VAL GLY GLY LYS MET THR ASP LEU GLY SEQRES 5 A 121 ARG LEU GLY ALA PHE ILE THR LYS VAL LYS LYS GLY SER SEQRES 6 A 121 LEU ALA ASP VAL VAL GLY HIS LEU ARG ALA GLY ASP GLU SEQRES 7 A 121 VAL LEU GLU TRP ASN GLY LYS PRO LEU PRO GLY ALA THR SEQRES 8 A 121 ASN GLU GLU VAL TYR ASN ILE ILE LEU GLU SER LYS SER SEQRES 9 A 121 GLU PRO GLN VAL GLU ILE ILE VAL SER ARG PRO SER GLY SEQRES 10 A 121 PRO SER SER GLY HELIX 1 1 SER A 65 VAL A 70 1 6 HELIX 2 2 THR A 91 SER A 102 1 12 HELIX 3 3 LYS A 103 GLU A 105 5 3 SHEET 1 A 6 GLY A 7 PRO A 12 0 SHEET 2 A 6 LEU A 19 LEU A 25 -1 O ARG A 22 N THR A 9 SHEET 3 A 6 VAL A 108 ARG A 114 -1 O ILE A 110 N VAL A 23 SHEET 4 A 6 GLU A 78 TRP A 82 -1 N GLU A 81 O ILE A 111 SHEET 5 A 6 LEU A 54 VAL A 61 -1 N ALA A 56 O VAL A 79 SHEET 6 A 6 LEU A 41 MET A 48 -1 N LYS A 42 O THR A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1