data_2CSW # _entry.id 2CSW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CSW pdb_00002csw 10.2210/pdb2csw/pdb RCSB RCSB024585 ? ? WWPDB D_1000024585 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001223.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CSW _pdbx_database_status.recvd_initial_deposition_date 2005-05-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hayashi, F.' 1 'Nagashima, T.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the FHA domain of human ubiquitin ligase protein RNF8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hayashi, F.' 1 ? primary 'Nagashima, T.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ubiquitin ligase protein RNF8' _entity.formula_weight 16056.050 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 6.3.2.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'FHA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RING finger protein 8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNK SLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNK SLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001223.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 THR n 1 10 GLY n 1 11 ASP n 1 12 ARG n 1 13 ALA n 1 14 GLY n 1 15 GLY n 1 16 ARG n 1 17 SER n 1 18 TRP n 1 19 CYS n 1 20 LEU n 1 21 ARG n 1 22 ARG n 1 23 VAL n 1 24 GLY n 1 25 MET n 1 26 SER n 1 27 ALA n 1 28 GLY n 1 29 TRP n 1 30 LEU n 1 31 LEU n 1 32 LEU n 1 33 GLU n 1 34 ASP n 1 35 GLY n 1 36 CYS n 1 37 GLU n 1 38 VAL n 1 39 THR n 1 40 VAL n 1 41 GLY n 1 42 ARG n 1 43 GLY n 1 44 PHE n 1 45 GLY n 1 46 VAL n 1 47 THR n 1 48 TYR n 1 49 GLN n 1 50 LEU n 1 51 VAL n 1 52 SER n 1 53 LYS n 1 54 ILE n 1 55 CYS n 1 56 PRO n 1 57 LEU n 1 58 MET n 1 59 ILE n 1 60 SER n 1 61 ARG n 1 62 ASN n 1 63 HIS n 1 64 CYS n 1 65 VAL n 1 66 LEU n 1 67 LYS n 1 68 GLN n 1 69 ASN n 1 70 PRO n 1 71 GLU n 1 72 GLY n 1 73 GLN n 1 74 TRP n 1 75 THR n 1 76 ILE n 1 77 MET n 1 78 ASP n 1 79 ASN n 1 80 LYS n 1 81 SER n 1 82 LEU n 1 83 ASN n 1 84 GLY n 1 85 VAL n 1 86 TRP n 1 87 LEU n 1 88 ASN n 1 89 ARG n 1 90 ALA n 1 91 ARG n 1 92 LEU n 1 93 GLU n 1 94 PRO n 1 95 LEU n 1 96 ARG n 1 97 VAL n 1 98 TYR n 1 99 SER n 1 100 ILE n 1 101 HIS n 1 102 GLN n 1 103 GLY n 1 104 ASP n 1 105 TYR n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 GLY n 1 110 VAL n 1 111 PRO n 1 112 LEU n 1 113 GLU n 1 114 ASN n 1 115 LYS n 1 116 GLU n 1 117 ASN n 1 118 ALA n 1 119 GLU n 1 120 TYR n 1 121 GLU n 1 122 TYR n 1 123 GLU n 1 124 VAL n 1 125 THR n 1 126 GLU n 1 127 GLU n 1 128 ASP n 1 129 TRP n 1 130 GLU n 1 131 THR n 1 132 ILE n 1 133 TYR n 1 134 PRO n 1 135 CYS n 1 136 LEU n 1 137 SER n 1 138 PRO n 1 139 LYS n 1 140 SER n 1 141 GLY n 1 142 PRO n 1 143 SER n 1 144 SER n 1 145 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RNF8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040322-86 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNF8_HUMAN _struct_ref.pdbx_db_accession O76064 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWL NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPK ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CSW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O76064 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 139 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 139 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CSW GLY A 1 ? UNP O76064 ? ? 'cloning artifact' 1 1 1 2CSW SER A 2 ? UNP O76064 ? ? 'cloning artifact' 2 2 1 2CSW SER A 3 ? UNP O76064 ? ? 'cloning artifact' 3 3 1 2CSW GLY A 4 ? UNP O76064 ? ? 'cloning artifact' 4 4 1 2CSW SER A 5 ? UNP O76064 ? ? 'cloning artifact' 5 5 1 2CSW SER A 6 ? UNP O76064 ? ? 'cloning artifact' 6 6 1 2CSW GLY A 7 ? UNP O76064 ? ? 'cloning artifact' 7 7 1 2CSW SER A 140 ? UNP O76064 ? ? 'cloning artifact' 140 8 1 2CSW GLY A 141 ? UNP O76064 ? ? 'cloning artifact' 141 9 1 2CSW PRO A 142 ? UNP O76064 ? ? 'cloning artifact' 142 10 1 2CSW SER A 143 ? UNP O76064 ? ? 'cloning artifact' 143 11 1 2CSW SER A 144 ? UNP O76064 ? ? 'cloning artifact' 144 12 1 2CSW GLY A 145 ? UNP O76064 ? ? 'cloning artifact' 145 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.1mM 13C,15N-labeled protein; 20mM d-TrisHCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2CSW _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2CSW _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 2CSW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CSW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9297 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2CSW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CSW _struct.title 'Solution structure of the FHA domain of human ubiquitin ligase protein RNF8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CSW _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;11-stranded beta sandwich, RING finger protein 8, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 55 ? ILE A 59 ? CYS A 55 ILE A 59 5 ? 5 HELX_P HELX_P2 2 TRP A 129 ? TYR A 133 ? TRP A 129 TYR A 133 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 30 ? LEU A 31 ? LEU A 30 LEU A 31 A 2 ARG A 16 ? LEU A 20 ? ARG A 16 LEU A 20 A 3 VAL A 124 ? ASP A 128 ? VAL A 124 ASP A 128 B 1 TYR A 48 ? GLN A 49 ? TYR A 48 GLN A 49 B 2 VAL A 38 ? GLY A 41 ? VAL A 38 GLY A 41 B 3 CYS A 64 ? GLN A 68 ? CYS A 64 GLN A 68 B 4 TRP A 74 ? MET A 77 ? TRP A 74 MET A 77 B 5 TYR A 98 ? SER A 99 ? TYR A 98 SER A 99 C 1 VAL A 85 ? LEU A 87 ? VAL A 85 LEU A 87 C 2 ILE A 106 ? LEU A 108 ? ILE A 106 LEU A 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 30 ? O LEU A 30 N LEU A 20 ? N LEU A 20 A 2 3 N CYS A 19 ? N CYS A 19 O THR A 125 ? O THR A 125 B 1 2 O TYR A 48 ? O TYR A 48 N THR A 39 ? N THR A 39 B 2 3 N VAL A 38 ? N VAL A 38 O LEU A 66 ? O LEU A 66 B 3 4 N VAL A 65 ? N VAL A 65 O MET A 77 ? O MET A 77 B 4 5 N ILE A 76 ? N ILE A 76 O TYR A 98 ? O TYR A 98 C 1 2 N TRP A 86 ? N TRP A 86 O GLN A 107 ? O GLN A 107 # _database_PDB_matrix.entry_id 2CSW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CSW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 TRP 129 129 129 TRP TRP A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 CYS 135 135 135 CYS CYS A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 GLY 145 145 145 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 19 ? ? -172.89 -170.90 2 1 LEU A 32 ? ? -116.73 68.37 3 1 LYS A 67 ? ? -175.01 149.81 4 1 CYS A 135 ? ? -110.86 60.50 5 1 PRO A 138 ? ? -69.73 95.57 6 2 LEU A 20 ? ? -112.80 71.51 7 2 ARG A 21 ? ? -51.60 105.45 8 2 LYS A 67 ? ? -174.61 145.33 9 2 LEU A 112 ? ? -61.44 -175.87 10 2 VAL A 124 ? ? -51.60 109.61 11 2 CYS A 135 ? ? -110.78 60.52 12 2 PRO A 142 ? ? -69.73 -173.84 13 3 CYS A 19 ? ? -172.42 -177.96 14 3 LEU A 32 ? ? -117.88 70.52 15 3 LYS A 80 ? ? 51.79 77.62 16 3 CYS A 135 ? ? -111.71 61.14 17 3 PRO A 142 ? ? -69.69 -178.05 18 4 ASP A 11 ? ? -175.37 139.93 19 4 CYS A 19 ? ? -173.70 -179.59 20 4 LEU A 20 ? ? -115.11 71.90 21 4 ASN A 62 ? ? -115.60 62.82 22 4 LYS A 80 ? ? 50.31 82.98 23 4 LEU A 112 ? ? -62.69 -178.44 24 4 CYS A 135 ? ? -112.44 61.65 25 4 PRO A 138 ? ? -69.73 85.31 26 4 PRO A 142 ? ? -69.76 -174.36 27 4 SER A 144 ? ? -171.58 122.56 28 5 CYS A 19 ? ? -173.79 -175.77 29 5 LEU A 20 ? ? -116.40 73.87 30 5 GLN A 102 ? ? -65.73 97.94 31 5 CYS A 135 ? ? -111.58 60.68 32 5 PRO A 138 ? ? -69.72 87.95 33 6 ARG A 16 ? ? -56.53 170.33 34 6 LEU A 20 ? ? -110.84 71.43 35 6 ARG A 21 ? ? -51.55 109.32 36 6 LEU A 32 ? ? -118.94 70.32 37 6 PHE A 44 ? ? -96.64 32.75 38 6 LEU A 82 ? ? -105.50 -64.34 39 6 CYS A 135 ? ? -108.96 59.91 40 7 SER A 6 ? ? -122.38 -73.54 41 7 ALA A 13 ? ? -105.01 55.56 42 7 LEU A 20 ? ? -118.42 73.94 43 7 LEU A 32 ? ? -117.37 75.57 44 7 ILE A 54 ? ? -79.94 -71.57 45 7 LYS A 80 ? ? 50.46 83.73 46 7 CYS A 135 ? ? -111.27 60.60 47 8 ASP A 11 ? ? -164.24 112.50 48 8 CYS A 19 ? ? -173.72 -178.32 49 8 CYS A 55 ? ? -154.34 72.98 50 8 LYS A 67 ? ? -175.39 148.04 51 8 TYR A 122 ? ? -124.95 -169.76 52 8 GLU A 123 ? ? -163.66 116.62 53 8 CYS A 135 ? ? -107.70 59.36 54 8 PRO A 138 ? ? -69.79 91.22 55 9 ASP A 11 ? ? -172.92 114.58 56 9 CYS A 19 ? ? -171.67 -177.05 57 9 LEU A 32 ? ? -115.05 76.63 58 9 ILE A 54 ? ? -66.72 -72.29 59 9 LYS A 67 ? ? -173.85 147.41 60 9 ASN A 79 ? ? -102.45 68.11 61 9 LEU A 82 ? ? -104.95 -66.05 62 9 CYS A 135 ? ? -109.15 59.40 63 10 ALA A 13 ? ? -109.63 76.74 64 10 CYS A 19 ? ? -172.80 -173.89 65 10 LEU A 32 ? ? -116.82 70.78 66 10 PHE A 44 ? ? -96.75 33.11 67 10 LYS A 80 ? ? 51.65 83.47 68 10 CYS A 135 ? ? -112.92 61.53 69 10 PRO A 142 ? ? -69.80 -176.78 70 11 CYS A 19 ? ? -173.09 -172.75 71 11 LEU A 20 ? ? -119.87 71.27 72 11 ARG A 21 ? ? -51.72 104.10 73 11 LEU A 32 ? ? -118.93 68.72 74 11 ILE A 54 ? ? -78.54 -71.14 75 11 LYS A 67 ? ? -172.82 149.60 76 11 ASN A 79 ? ? -91.84 57.27 77 11 LEU A 82 ? ? -91.90 -63.48 78 11 ALA A 118 ? ? -55.24 172.10 79 11 CYS A 135 ? ? -109.01 60.11 80 12 ALA A 13 ? ? -178.27 149.16 81 12 CYS A 19 ? ? -172.20 -173.50 82 12 SER A 26 ? ? -90.23 46.89 83 12 LEU A 32 ? ? -112.86 70.76 84 12 LYS A 80 ? ? 51.93 74.11 85 12 TYR A 122 ? ? -122.47 -169.88 86 12 GLU A 123 ? ? -163.28 109.78 87 12 CYS A 135 ? ? -111.25 60.88 88 12 PRO A 138 ? ? -69.76 98.98 89 13 SER A 3 ? ? -65.11 93.73 90 13 ASP A 11 ? ? -175.14 114.41 91 13 CYS A 19 ? ? -173.73 -174.03 92 13 ARG A 21 ? ? -51.79 106.03 93 13 LEU A 32 ? ? -115.00 71.03 94 13 LEU A 82 ? ? -100.64 -66.01 95 13 CYS A 135 ? ? -112.49 61.34 96 13 PRO A 138 ? ? -69.74 97.41 97 14 ASP A 11 ? ? -170.29 114.09 98 14 LEU A 20 ? ? -117.85 76.09 99 14 PHE A 44 ? ? -99.93 33.85 100 14 CYS A 55 ? ? -151.42 72.70 101 14 GLN A 102 ? ? -52.38 105.25 102 14 CYS A 135 ? ? -108.48 59.27 103 14 PRO A 138 ? ? -69.77 97.61 104 15 SER A 2 ? ? -91.95 -62.68 105 15 ASP A 11 ? ? -110.94 52.03 106 15 CYS A 19 ? ? -173.85 -177.56 107 15 LEU A 20 ? ? -114.92 73.91 108 15 LYS A 80 ? ? 51.22 86.78 109 15 GLN A 102 ? ? -55.28 105.19 110 15 CYS A 135 ? ? -112.80 61.85 111 16 LEU A 20 ? ? -114.19 74.78 112 16 ARG A 21 ? ? -51.91 108.34 113 16 LYS A 67 ? ? -176.39 148.17 114 16 ASN A 79 ? ? -101.92 67.09 115 16 VAL A 124 ? ? -56.44 106.71 116 16 CYS A 135 ? ? -113.13 61.95 117 17 VAL A 8 ? ? 54.50 75.54 118 17 ASP A 11 ? ? -95.44 38.63 119 17 LEU A 20 ? ? -117.95 77.95 120 17 LEU A 32 ? ? -115.42 69.09 121 17 PHE A 44 ? ? -97.16 30.25 122 17 LYS A 80 ? ? 51.92 75.65 123 17 GLN A 102 ? ? -57.55 106.90 124 17 CYS A 135 ? ? -109.60 59.93 125 17 SER A 140 ? ? -102.97 60.55 126 17 SER A 143 ? ? -123.30 -74.29 127 18 ALA A 13 ? ? -160.11 103.21 128 18 LEU A 20 ? ? -116.87 79.63 129 18 PHE A 44 ? ? -100.57 52.26 130 18 ILE A 54 ? ? -74.96 -72.44 131 18 CYS A 135 ? ? -109.78 60.15 132 19 CYS A 19 ? ? -173.16 -170.19 133 19 ARG A 21 ? ? -51.50 107.48 134 19 LEU A 32 ? ? -116.14 69.60 135 19 ILE A 54 ? ? -69.41 -72.27 136 19 LYS A 80 ? ? 51.92 82.40 137 19 LEU A 82 ? ? -97.02 -62.99 138 19 LEU A 112 ? ? -61.45 -178.80 139 19 CYS A 135 ? ? -112.49 61.72 140 19 PRO A 142 ? ? -69.74 98.70 141 20 ALA A 13 ? ? 62.51 68.36 142 20 CYS A 19 ? ? -171.54 -171.47 143 20 ARG A 21 ? ? -51.61 109.10 144 20 LYS A 80 ? ? 52.71 87.09 145 20 GLN A 102 ? ? -69.35 91.02 146 20 CYS A 135 ? ? -111.98 60.88 147 20 PRO A 142 ? ? -69.78 -172.26 #