HEADER LIGASE 23-MAY-05 2CSW TITLE SOLUTION STRUCTURE OF THE FHA DOMAIN OF HUMAN UBIQUITIN LIGASE PROTEIN TITLE 2 RNF8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN LIGASE PROTEIN RNF8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FHA DOMAIN; COMPND 5 SYNONYM: RING FINGER PROTEIN 8; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF8; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040322-86; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS 11-STRANDED BETA SANDWICH, RING FINGER PROTEIN 8, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HAYASHI,T.NAGASHIMA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CSW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CSW 1 VERSN REVDAT 1 23-NOV-05 2CSW 0 JRNL AUTH F.HAYASHI,T.NAGASHIMA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FHA DOMAIN OF HUMAN UBIQUITIN JRNL TITL 2 LIGASE PROTEIN RNF8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CSW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024585. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRISHCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 19 -170.90 -172.89 REMARK 500 1 LEU A 32 68.37 -116.73 REMARK 500 1 LYS A 67 149.81 -175.01 REMARK 500 1 CYS A 135 60.50 -110.86 REMARK 500 1 PRO A 138 95.57 -69.73 REMARK 500 2 LEU A 20 71.51 -112.80 REMARK 500 2 ARG A 21 105.45 -51.60 REMARK 500 2 LYS A 67 145.33 -174.61 REMARK 500 2 LEU A 112 -175.87 -61.44 REMARK 500 2 VAL A 124 109.61 -51.60 REMARK 500 2 CYS A 135 60.52 -110.78 REMARK 500 2 PRO A 142 -173.84 -69.73 REMARK 500 3 CYS A 19 -177.96 -172.42 REMARK 500 3 LEU A 32 70.52 -117.88 REMARK 500 3 LYS A 80 77.62 51.79 REMARK 500 3 CYS A 135 61.14 -111.71 REMARK 500 3 PRO A 142 -178.05 -69.69 REMARK 500 4 ASP A 11 139.93 -175.37 REMARK 500 4 CYS A 19 -179.59 -173.70 REMARK 500 4 LEU A 20 71.90 -115.11 REMARK 500 4 ASN A 62 62.82 -115.60 REMARK 500 4 LYS A 80 82.98 50.31 REMARK 500 4 LEU A 112 -178.44 -62.69 REMARK 500 4 CYS A 135 61.65 -112.44 REMARK 500 4 PRO A 138 85.31 -69.73 REMARK 500 4 PRO A 142 -174.36 -69.76 REMARK 500 4 SER A 144 122.56 -171.58 REMARK 500 5 CYS A 19 -175.77 -173.79 REMARK 500 5 LEU A 20 73.87 -116.40 REMARK 500 5 GLN A 102 97.94 -65.73 REMARK 500 5 CYS A 135 60.68 -111.58 REMARK 500 5 PRO A 138 87.95 -69.72 REMARK 500 6 ARG A 16 170.33 -56.53 REMARK 500 6 LEU A 20 71.43 -110.84 REMARK 500 6 ARG A 21 109.32 -51.55 REMARK 500 6 LEU A 32 70.32 -118.94 REMARK 500 6 PHE A 44 32.75 -96.64 REMARK 500 6 LEU A 82 -64.34 -105.50 REMARK 500 6 CYS A 135 59.91 -108.96 REMARK 500 7 SER A 6 -73.54 -122.38 REMARK 500 7 ALA A 13 55.56 -105.01 REMARK 500 7 LEU A 20 73.94 -118.42 REMARK 500 7 LEU A 32 75.57 -117.37 REMARK 500 7 ILE A 54 -71.57 -79.94 REMARK 500 7 LYS A 80 83.73 50.46 REMARK 500 7 CYS A 135 60.60 -111.27 REMARK 500 8 ASP A 11 112.50 -164.24 REMARK 500 8 CYS A 19 -178.32 -173.72 REMARK 500 8 CYS A 55 72.98 -154.34 REMARK 500 8 LYS A 67 148.04 -175.39 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001223.1 RELATED DB: TARGETDB DBREF 2CSW A 8 139 UNP O76064 RNF8_HUMAN 8 139 SEQADV 2CSW GLY A 1 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 2 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 3 UNP O76064 CLONING ARTIFACT SEQADV 2CSW GLY A 4 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 5 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 6 UNP O76064 CLONING ARTIFACT SEQADV 2CSW GLY A 7 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 140 UNP O76064 CLONING ARTIFACT SEQADV 2CSW GLY A 141 UNP O76064 CLONING ARTIFACT SEQADV 2CSW PRO A 142 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 143 UNP O76064 CLONING ARTIFACT SEQADV 2CSW SER A 144 UNP O76064 CLONING ARTIFACT SEQADV 2CSW GLY A 145 UNP O76064 CLONING ARTIFACT SEQRES 1 A 145 GLY SER SER GLY SER SER GLY VAL THR GLY ASP ARG ALA SEQRES 2 A 145 GLY GLY ARG SER TRP CYS LEU ARG ARG VAL GLY MET SER SEQRES 3 A 145 ALA GLY TRP LEU LEU LEU GLU ASP GLY CYS GLU VAL THR SEQRES 4 A 145 VAL GLY ARG GLY PHE GLY VAL THR TYR GLN LEU VAL SER SEQRES 5 A 145 LYS ILE CYS PRO LEU MET ILE SER ARG ASN HIS CYS VAL SEQRES 6 A 145 LEU LYS GLN ASN PRO GLU GLY GLN TRP THR ILE MET ASP SEQRES 7 A 145 ASN LYS SER LEU ASN GLY VAL TRP LEU ASN ARG ALA ARG SEQRES 8 A 145 LEU GLU PRO LEU ARG VAL TYR SER ILE HIS GLN GLY ASP SEQRES 9 A 145 TYR ILE GLN LEU GLY VAL PRO LEU GLU ASN LYS GLU ASN SEQRES 10 A 145 ALA GLU TYR GLU TYR GLU VAL THR GLU GLU ASP TRP GLU SEQRES 11 A 145 THR ILE TYR PRO CYS LEU SER PRO LYS SER GLY PRO SER SEQRES 12 A 145 SER GLY HELIX 1 1 CYS A 55 ILE A 59 5 5 HELIX 2 2 TRP A 129 TYR A 133 1 5 SHEET 1 A 3 LEU A 30 LEU A 31 0 SHEET 2 A 3 ARG A 16 LEU A 20 -1 N LEU A 20 O LEU A 30 SHEET 3 A 3 VAL A 124 ASP A 128 -1 O THR A 125 N CYS A 19 SHEET 1 B 5 TYR A 48 GLN A 49 0 SHEET 2 B 5 VAL A 38 GLY A 41 1 N THR A 39 O TYR A 48 SHEET 3 B 5 CYS A 64 GLN A 68 -1 O LEU A 66 N VAL A 38 SHEET 4 B 5 TRP A 74 MET A 77 -1 O MET A 77 N VAL A 65 SHEET 5 B 5 TYR A 98 SER A 99 -1 O TYR A 98 N ILE A 76 SHEET 1 C 2 VAL A 85 LEU A 87 0 SHEET 2 C 2 ILE A 106 LEU A 108 -1 O GLN A 107 N TRP A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1