HEADER TRANSFERASE 24-MAY-05 2CU1 TITLE SOLUTION STRUCTURE OF THE PB1 DOMAIN OF HUMAN PROTEIN KINASE MEKK2B COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB1 DOMAIN; COMPND 5 SYNONYM: MAPK/ERK KINASE KINASE 2, MEK KINASE 2, MEKK 2; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP3K2, MAPKKK2, MEKK2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050207-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PB1 DOMAIN, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 2, KEYWDS 2 MAPK/ERK KINASE KINASE 2, MEK KINASE 2, MEKK 2, SIGNALING PROTEIN, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 10-NOV-21 2CU1 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CU1 1 VERSN REVDAT 1 24-NOV-05 2CU1 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PB1 DOMAIN OF HUMAN PROTEIN KINASE JRNL TITL 2 MEKK2B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CU1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024617. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.53MM U-15N,13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 96.11 -62.47 REMARK 500 1 ASN A 52 -66.98 -132.12 REMARK 500 1 LEU A 58 96.54 -59.62 REMARK 500 1 ASN A 87 -60.99 -128.86 REMARK 500 1 THR A 93 -19.82 -48.39 REMARK 500 1 PRO A 97 -174.13 -69.73 REMARK 500 1 PRO A 100 94.61 -69.77 REMARK 500 1 SER A 101 128.94 -171.58 REMARK 500 2 ARG A 16 28.01 39.13 REMARK 500 2 ASN A 52 -63.56 -133.35 REMARK 500 2 LEU A 58 98.48 -61.91 REMARK 500 2 SER A 74 90.06 -67.32 REMARK 500 2 MET A 77 108.45 -54.82 REMARK 500 2 GLU A 96 54.57 35.07 REMARK 500 2 SER A 101 96.47 -51.46 REMARK 500 3 SER A 3 99.25 -68.32 REMARK 500 3 ASN A 51 -62.34 -91.61 REMARK 500 3 ASN A 52 -67.51 -131.72 REMARK 500 3 LEU A 58 102.29 -59.85 REMARK 500 3 GLU A 96 149.72 -174.77 REMARK 500 4 SER A 2 43.00 34.81 REMARK 500 4 ASN A 52 -59.25 -134.25 REMARK 500 4 GLU A 53 -31.24 -130.35 REMARK 500 4 THR A 93 93.85 -69.91 REMARK 500 4 ASN A 94 122.37 -172.95 REMARK 500 5 ARG A 16 53.61 38.96 REMARK 500 5 SER A 44 36.44 -83.76 REMARK 500 5 ASN A 51 -75.24 -86.54 REMARK 500 5 ASN A 52 -75.47 -108.44 REMARK 500 5 LEU A 58 95.01 -64.26 REMARK 500 5 THR A 90 131.47 -174.94 REMARK 500 6 SER A 5 150.49 -40.66 REMARK 500 6 SER A 6 117.53 -173.25 REMARK 500 6 ASN A 51 -72.29 -87.55 REMARK 500 6 ASN A 52 -68.18 -120.37 REMARK 500 6 PRO A 57 94.59 -69.75 REMARK 500 6 LEU A 58 98.69 -55.93 REMARK 500 6 GLN A 91 40.97 -98.17 REMARK 500 6 LEU A 95 134.57 -171.66 REMARK 500 6 PRO A 97 -172.06 -69.80 REMARK 500 7 ASN A 51 -66.05 -95.79 REMARK 500 7 ASN A 52 -69.92 -128.46 REMARK 500 7 PRO A 57 97.45 -69.72 REMARK 500 7 LEU A 58 98.70 -56.73 REMARK 500 7 MET A 77 96.37 -67.52 REMARK 500 7 ILE A 86 108.40 -48.67 REMARK 500 7 SER A 102 142.73 -174.49 REMARK 500 8 ASN A 52 -75.78 -125.80 REMARK 500 8 LEU A 58 91.85 -61.96 REMARK 500 8 ILE A 75 -71.53 -73.57 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001045.1 RELATED DB: TARGETDB DBREF 2CU1 A 8 97 UNP Q9Y2U5 M3K2_HUMAN 43 132 SEQADV 2CU1 GLY A 1 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 2 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 3 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 GLY A 4 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 5 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 6 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 GLY A 7 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 VAL A 68 UNP Q9Y2U5 LEU 103 ENGINEERED MUTATION SEQADV 2CU1 SER A 98 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 GLY A 99 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 PRO A 100 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 101 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 SER A 102 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2CU1 GLY A 103 UNP Q9Y2U5 CLONING ARTIFACT SEQRES 1 A 103 GLY SER SER GLY SER SER GLY ASP VAL ARG VAL LYS PHE SEQRES 2 A 103 GLU HIS ARG GLY GLU LYS ARG ILE LEU GLN PHE PRO ARG SEQRES 3 A 103 PRO VAL LYS LEU GLU ASP LEU ARG SER LYS ALA LYS ILE SEQRES 4 A 103 ALA PHE GLY GLN SER MET ASP LEU HIS TYR THR ASN ASN SEQRES 5 A 103 GLU LEU VAL ILE PRO LEU THR THR GLN ASP ASP LEU ASP SEQRES 6 A 103 LYS ALA VAL GLU LEU LEU ASP ARG SER ILE HIS MET LYS SEQRES 7 A 103 SER LEU LYS ILE LEU LEU VAL ILE ASN GLY SER THR GLN SEQRES 8 A 103 ALA THR ASN LEU GLU PRO SER GLY PRO SER SER GLY HELIX 1 1 LYS A 29 GLY A 42 1 14 HELIX 2 2 THR A 60 SER A 74 1 15 SHEET 1 A 5 GLU A 18 PRO A 25 0 SHEET 2 A 5 ASP A 8 HIS A 15 -1 N HIS A 15 O GLU A 18 SHEET 3 A 5 LEU A 80 ILE A 86 1 O ILE A 82 N LYS A 12 SHEET 4 A 5 MET A 45 TYR A 49 -1 N ASP A 46 O VAL A 85 SHEET 5 A 5 ILE A 56 PRO A 57 -1 O ILE A 56 N TYR A 49 CISPEP 1 ARG A 26 PRO A 27 1 0.03 CISPEP 2 ARG A 26 PRO A 27 2 -0.01 CISPEP 3 ARG A 26 PRO A 27 3 -0.03 CISPEP 4 ARG A 26 PRO A 27 4 -0.04 CISPEP 5 ARG A 26 PRO A 27 5 -0.08 CISPEP 6 ARG A 26 PRO A 27 6 -0.04 CISPEP 7 ARG A 26 PRO A 27 7 0.03 CISPEP 8 ARG A 26 PRO A 27 8 0.09 CISPEP 9 ARG A 26 PRO A 27 9 -0.02 CISPEP 10 ARG A 26 PRO A 27 10 0.00 CISPEP 11 ARG A 26 PRO A 27 11 -0.02 CISPEP 12 ARG A 26 PRO A 27 12 0.03 CISPEP 13 ARG A 26 PRO A 27 13 -0.07 CISPEP 14 ARG A 26 PRO A 27 14 0.02 CISPEP 15 ARG A 26 PRO A 27 15 0.05 CISPEP 16 ARG A 26 PRO A 27 16 -0.04 CISPEP 17 ARG A 26 PRO A 27 17 -0.03 CISPEP 18 ARG A 26 PRO A 27 18 0.05 CISPEP 19 ARG A 26 PRO A 27 19 -0.07 CISPEP 20 ARG A 26 PRO A 27 20 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1