HEADER SIGNALING PROTEIN 26-MAY-05 2CUB TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF THE HUMAN CYTOPLASMIC PROTEIN TITLE 2 NCK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 1, SH2/SH3 ADAPTOR PROTEIN NCK-ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCK1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040621-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN, NCK1 ADAPTOR, TYROSINE KINASE, SIGNAL TRANSDUCTION, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,T.KIGAWA,M.SATO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CUB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CUB 1 VERSN REVDAT 1 26-NOV-05 2CUB 0 JRNL AUTH S.OHNISHI,T.KIGAWA,M.SATO,T.TOMIZAWA,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF THE HUMAN JRNL TITL 2 CYTOPLASMIC PROTEIN NCK1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CUB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000024626. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM PROTEIN U-15N,13C; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORTION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 71 94.65 -62.81 REMARK 500 2 SER A 5 133.56 -171.96 REMARK 500 2 ASP A 15 41.75 37.19 REMARK 500 2 SER A 49 -39.22 -34.37 REMARK 500 2 GLU A 71 89.86 -63.82 REMARK 500 2 ASP A 74 177.89 -48.99 REMARK 500 2 SER A 87 42.49 39.14 REMARK 500 3 ASP A 8 151.77 -49.45 REMARK 500 3 ASP A 50 -38.34 -34.97 REMARK 500 3 GLU A 71 100.19 -59.50 REMARK 500 4 SER A 6 105.29 -59.93 REMARK 500 4 ASN A 17 35.66 71.19 REMARK 500 4 SER A 83 119.03 -38.55 REMARK 500 4 PRO A 85 95.48 -69.73 REMARK 500 4 SER A 86 158.71 -44.95 REMARK 500 5 SER A 5 98.81 -54.96 REMARK 500 5 ASN A 17 36.16 70.03 REMARK 500 5 VAL A 22 97.64 -63.26 REMARK 500 5 LYS A 38 109.60 -56.42 REMARK 500 5 GLU A 71 96.57 -58.22 REMARK 500 6 PRO A 9 93.12 -69.75 REMARK 500 6 ASN A 17 34.60 71.16 REMARK 500 6 TYR A 57 114.02 -162.45 REMARK 500 6 GLU A 71 98.45 -65.68 REMARK 500 6 SER A 83 38.23 -87.57 REMARK 500 6 SER A 86 45.75 36.31 REMARK 500 7 SER A 5 46.02 37.75 REMARK 500 7 ARG A 12 52.63 39.11 REMARK 500 7 LEU A 13 111.64 -37.72 REMARK 500 7 ASN A 17 31.57 70.66 REMARK 500 7 ASP A 79 150.16 -43.49 REMARK 500 8 ASP A 15 37.07 39.84 REMARK 500 8 SER A 49 -34.53 -39.19 REMARK 500 8 ASP A 74 151.35 -47.37 REMARK 500 9 ASP A 15 39.58 39.44 REMARK 500 9 ASN A 17 32.62 73.75 REMARK 500 10 ASP A 15 39.78 35.01 REMARK 500 10 VAL A 22 98.89 -66.09 REMARK 500 10 GLU A 71 93.25 -57.61 REMARK 500 10 ASP A 79 52.11 -91.07 REMARK 500 10 PRO A 85 98.69 -69.74 REMARK 500 10 SER A 87 157.73 -47.59 REMARK 500 11 SER A 3 126.37 -172.72 REMARK 500 11 ASN A 17 32.80 71.73 REMARK 500 11 LYS A 38 109.48 -57.83 REMARK 500 11 TYR A 57 115.05 -160.52 REMARK 500 12 SER A 5 -55.27 -122.57 REMARK 500 12 SER A 6 103.31 -47.68 REMARK 500 12 ASP A 8 139.81 -36.12 REMARK 500 12 ASP A 15 41.74 37.41 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002947.1 RELATED DB: TARGETDB DBREF 2CUB A 8 82 UNP P16333 NCK1_HUMAN 99 173 SEQADV 2CUB GLY A 1 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 2 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 3 UNP P16333 CLONING ARTIFACT SEQADV 2CUB GLY A 4 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 5 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 6 UNP P16333 CLONING ARTIFACT SEQADV 2CUB GLY A 7 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 83 UNP P16333 CLONING ARTIFACT SEQADV 2CUB GLY A 84 UNP P16333 CLONING ARTIFACT SEQADV 2CUB PRO A 85 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 86 UNP P16333 CLONING ARTIFACT SEQADV 2CUB SER A 87 UNP P16333 CLONING ARTIFACT SEQADV 2CUB GLY A 88 UNP P16333 CLONING ARTIFACT SEQRES 1 A 88 GLY SER SER GLY SER SER GLY ASP PRO GLY GLU ARG LEU SEQRES 2 A 88 TYR ASP LEU ASN MET PRO ALA TYR VAL LYS PHE ASN TYR SEQRES 3 A 88 MET ALA GLU ARG GLU ASP GLU LEU SER LEU ILE LYS GLY SEQRES 4 A 88 THR LYS VAL ILE VAL MET GLU LYS CYS SER ASP GLY TRP SEQRES 5 A 88 TRP ARG GLY SER TYR ASN GLY GLN VAL GLY TRP PHE PRO SEQRES 6 A 88 SER ASN TYR VAL THR GLU GLU GLY ASP SER PRO LEU GLY SEQRES 7 A 88 ASP HIS VAL GLY SER GLY PRO SER SER GLY HELIX 1 1 SER A 66 TYR A 68 5 3 SHEET 1 A 5 GLN A 60 PRO A 65 0 SHEET 2 A 5 TRP A 52 TYR A 57 -1 SHEET 3 A 5 THR A 40 LYS A 47 -1 SHEET 4 A 5 LEU A 13 VAL A 22 -1 SHEET 5 A 5 VAL A 69 GLU A 71 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1