data_2CUD # _entry.id 2CUD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CUD pdb_00002cud 10.2210/pdb2cud/pdb RCSB RCSB024628 ? ? WWPDB D_1000024628 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002007132.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CUD _pdbx_database_status.recvd_initial_deposition_date 2005-05-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohnishi, S.' 1 'Kigawa, T.' 2 'Tochio, N.' 3 'Sato, M.' 4 'Nameki, N.' 5 'Koshiba, S.' 6 'Inoue, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the SH3 domain of the human SRC-like adopter protein (SLAP)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohnishi, S.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Tochio, N.' 3 ? primary 'Sato, M.' 4 ? primary 'Nameki, N.' 5 ? primary 'Koshiba, S.' 6 ? primary 'Inoue, M.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description SRC-like-adapter _entity.formula_weight 8241.121 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Src-like-adapter protein 1, hSLAP, Slap' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002007132.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 PRO n 1 11 ASN n 1 12 PRO n 1 13 GLU n 1 14 GLY n 1 15 LEU n 1 16 ASP n 1 17 SER n 1 18 ASP n 1 19 PHE n 1 20 LEU n 1 21 ALA n 1 22 VAL n 1 23 LEU n 1 24 SER n 1 25 ASP n 1 26 TYR n 1 27 PRO n 1 28 SER n 1 29 PRO n 1 30 ASP n 1 31 ILE n 1 32 SER n 1 33 PRO n 1 34 PRO n 1 35 ILE n 1 36 PHE n 1 37 ARG n 1 38 ARG n 1 39 GLY n 1 40 GLU n 1 41 LYS n 1 42 LEU n 1 43 ARG n 1 44 VAL n 1 45 ILE n 1 46 SER n 1 47 ASP n 1 48 GLU n 1 49 GLY n 1 50 GLY n 1 51 TRP n 1 52 TRP n 1 53 LYS n 1 54 ALA n 1 55 ILE n 1 56 SER n 1 57 LEU n 1 58 SER n 1 59 THR n 1 60 GLY n 1 61 ARG n 1 62 GLU n 1 63 SER n 1 64 TYR n 1 65 ILE n 1 66 PRO n 1 67 GLY n 1 68 ILE n 1 69 CYS n 1 70 VAL n 1 71 ALA n 1 72 ARG n 1 73 VAL n 1 74 SER n 1 75 GLY n 1 76 PRO n 1 77 SER n 1 78 SER n 1 79 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SLA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040921-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SLAP1_HUMAN _struct_ref.pdbx_db_accession Q13239 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARV _struct_ref.pdbx_align_begin 14 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CUD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 73 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13239 _struct_ref_seq.db_align_beg 14 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 79 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CUD GLY A 1 ? UNP Q13239 ? ? 'cloning artifact' 1 1 1 2CUD SER A 2 ? UNP Q13239 ? ? 'cloning artifact' 2 2 1 2CUD SER A 3 ? UNP Q13239 ? ? 'cloning artifact' 3 3 1 2CUD GLY A 4 ? UNP Q13239 ? ? 'cloning artifact' 4 4 1 2CUD SER A 5 ? UNP Q13239 ? ? 'cloning artifact' 5 5 1 2CUD SER A 6 ? UNP Q13239 ? ? 'cloning artifact' 6 6 1 2CUD GLY A 7 ? UNP Q13239 ? ? 'cloning artifact' 7 7 1 2CUD SER A 74 ? UNP Q13239 ? ? 'cloning artifact' 74 8 1 2CUD GLY A 75 ? UNP Q13239 ? ? 'cloning artifact' 75 9 1 2CUD PRO A 76 ? UNP Q13239 ? ? 'cloning artifact' 76 10 1 2CUD SER A 77 ? UNP Q13239 ? ? 'cloning artifact' 77 11 1 2CUD SER A 78 ? UNP Q13239 ? ? 'cloning artifact' 78 12 1 2CUD GLY A 79 ? UNP Q13239 ? ? 'cloning artifact' 79 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.28mM protein U-15N,13C; 20mM d-TrisHCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2CUD _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CUD _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CUD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0,4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2CUD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CUD _struct.title 'Solution structure of the SH3 domain of the human SRC-like adopter protein (SLAP)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CUD _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;SH3 domain, Src-like adapter protein (Slap), negative mitogenesis regulator, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 67 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 69 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 67 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 69 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 1 -0.06 2 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 2 -0.07 3 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 3 -0.05 4 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 4 0.02 5 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 5 0.00 6 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 6 -0.04 7 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 7 -0.07 8 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 8 -0.05 9 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 9 -0.05 10 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 10 0.02 11 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 11 -0.02 12 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 12 -0.06 13 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 13 -0.11 14 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 14 -0.06 15 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 15 -0.10 16 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 16 -0.05 17 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 17 -0.04 18 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 18 -0.01 19 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 19 -0.08 20 TYR 26 A . ? TYR 26 A PRO 27 A ? PRO 27 A 20 -0.03 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 62 ? PRO A 66 ? GLU A 62 PRO A 66 A 2 TRP A 51 ? SER A 56 ? TRP A 51 SER A 56 A 3 LYS A 41 ? GLU A 48 ? LYS A 41 GLU A 48 A 4 PHE A 19 ? VAL A 22 ? PHE A 19 VAL A 22 A 5 VAL A 70 ? VAL A 73 ? VAL A 70 VAL A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 63 ? O SER A 63 N ALA A 54 ? N ALA A 54 A 2 3 O LYS A 53 ? O LYS A 53 N ILE A 45 ? N ILE A 45 A 3 4 O LEU A 42 ? O LEU A 42 N LEU A 20 ? N LEU A 20 A 4 5 N ALA A 21 ? N ALA A 21 O ALA A 71 ? O ALA A 71 # _database_PDB_matrix.entry_id 2CUD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CUD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLY 79 79 79 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 11 ? ? -38.31 144.84 2 1 GLU A 13 ? ? 35.48 41.28 3 1 ASP A 25 ? ? -35.97 140.07 4 1 PRO A 27 ? ? -69.75 -173.57 5 1 PRO A 29 ? ? -69.74 3.33 6 1 PRO A 76 ? ? -69.67 -175.66 7 2 PRO A 8 ? ? -69.70 -176.65 8 2 ASN A 11 ? ? -175.02 148.42 9 2 PRO A 29 ? ? -69.70 5.24 10 2 ILE A 31 ? ? -125.56 -53.57 11 2 PRO A 76 ? ? -69.76 2.78 12 2 SER A 77 ? ? -34.90 134.88 13 3 PRO A 8 ? ? -69.75 -174.51 14 3 PRO A 10 ? ? -69.77 1.95 15 3 ASN A 11 ? ? -34.64 135.56 16 3 PRO A 12 ? ? -69.85 1.67 17 3 GLU A 13 ? ? -47.14 101.63 18 3 VAL A 22 ? ? -55.68 106.98 19 3 PRO A 27 ? ? -69.76 -175.48 20 3 PRO A 29 ? ? -69.73 2.92 21 3 PRO A 76 ? ? -69.79 1.27 22 3 SER A 78 ? ? -37.06 124.91 23 4 SER A 2 ? ? 38.36 41.86 24 4 SER A 6 ? ? -37.79 -38.91 25 4 GLU A 13 ? ? -87.96 49.35 26 4 ASP A 25 ? ? -35.37 148.34 27 4 PRO A 27 ? ? -69.80 -174.27 28 4 PRO A 29 ? ? -69.78 3.04 29 5 PRO A 10 ? ? -69.82 80.02 30 5 ASN A 11 ? ? -49.07 109.99 31 5 GLU A 13 ? ? -85.25 33.84 32 5 VAL A 22 ? ? -61.63 99.21 33 5 PRO A 27 ? ? -69.76 -175.09 34 5 PRO A 29 ? ? -69.74 1.14 35 6 PRO A 10 ? ? -69.80 3.00 36 6 ASN A 11 ? ? -33.32 143.21 37 6 PRO A 12 ? ? -69.67 2.50 38 6 GLU A 13 ? ? -50.65 87.05 39 6 ASP A 25 ? ? -36.36 144.55 40 6 PRO A 29 ? ? -69.78 2.86 41 6 ARG A 72 ? ? -67.12 99.01 42 6 PRO A 76 ? ? -69.78 -178.16 43 7 PRO A 10 ? ? -69.68 80.10 44 7 PRO A 12 ? ? -69.80 0.24 45 7 ASP A 25 ? ? -34.99 139.96 46 7 PRO A 27 ? ? -69.74 -174.67 47 7 PRO A 29 ? ? -69.73 5.15 48 7 ARG A 37 ? ? -49.77 156.55 49 7 SER A 77 ? ? -125.94 -55.66 50 8 ASP A 16 ? ? -64.35 -179.47 51 8 VAL A 22 ? ? -57.27 99.97 52 8 PRO A 27 ? ? -69.75 -174.69 53 8 PRO A 29 ? ? -69.76 3.52 54 8 SER A 74 ? ? -35.06 137.08 55 9 PRO A 8 ? ? -69.82 -174.93 56 9 PRO A 10 ? ? -69.83 2.39 57 9 PRO A 12 ? ? -69.80 2.88 58 9 GLU A 13 ? ? -34.57 116.45 59 9 VAL A 22 ? ? -65.04 98.60 60 9 PRO A 27 ? ? -69.75 -175.28 61 9 PRO A 29 ? ? -69.80 3.57 62 9 PRO A 76 ? ? -69.77 0.91 63 9 SER A 77 ? ? -35.04 132.71 64 10 SER A 3 ? ? -171.79 112.89 65 10 PRO A 8 ? ? -69.75 -168.23 66 10 ASN A 11 ? ? -34.61 150.19 67 10 PRO A 12 ? ? -69.73 1.63 68 10 GLU A 13 ? ? -100.23 73.69 69 10 VAL A 22 ? ? -55.33 104.75 70 10 ASP A 25 ? ? -39.43 146.55 71 10 PRO A 27 ? ? -69.83 -174.27 72 10 PRO A 29 ? ? -69.69 1.21 73 10 SER A 74 ? ? -107.77 79.40 74 10 SER A 78 ? ? -51.11 106.33 75 11 SER A 3 ? ? -123.93 -53.47 76 11 PRO A 10 ? ? -69.79 2.98 77 11 ASN A 11 ? ? -34.61 144.02 78 11 PRO A 12 ? ? -69.82 1.72 79 11 GLU A 13 ? ? 32.62 48.69 80 11 VAL A 22 ? ? -58.53 100.72 81 11 PRO A 27 ? ? -69.82 -178.67 82 11 PRO A 29 ? ? -69.77 2.46 83 11 PRO A 76 ? ? -69.70 2.29 84 11 SER A 77 ? ? -40.18 154.84 85 12 LEU A 9 ? ? -39.74 153.41 86 12 PRO A 12 ? ? -69.71 1.83 87 12 GLU A 13 ? ? 35.18 31.82 88 12 PRO A 27 ? ? -69.80 -174.52 89 12 PRO A 29 ? ? -69.80 1.63 90 12 ARG A 72 ? ? -61.00 97.72 91 13 SER A 3 ? ? -170.84 120.86 92 13 ASN A 11 ? ? -46.96 159.51 93 13 PRO A 12 ? ? -69.78 0.01 94 13 VAL A 22 ? ? -59.11 96.67 95 13 PRO A 27 ? ? -69.71 -173.98 96 13 PRO A 29 ? ? -69.81 3.44 97 13 SER A 74 ? ? -99.40 41.69 98 13 SER A 78 ? ? -108.40 41.51 99 14 SER A 5 ? ? -101.97 -60.14 100 14 PRO A 10 ? ? -69.80 79.96 101 14 VAL A 22 ? ? -58.86 103.62 102 14 ASP A 25 ? ? -37.03 149.38 103 14 PRO A 27 ? ? -69.76 -175.30 104 14 PRO A 29 ? ? -69.71 3.42 105 14 PRO A 76 ? ? -69.86 90.27 106 14 SER A 77 ? ? -107.28 40.83 107 15 SER A 2 ? ? -46.29 171.26 108 15 ASN A 11 ? ? -34.52 150.67 109 15 PRO A 12 ? ? -69.79 0.63 110 15 GLU A 13 ? ? -34.98 94.26 111 15 VAL A 22 ? ? -66.85 97.37 112 15 ASP A 25 ? ? -39.10 149.06 113 15 PRO A 27 ? ? -69.70 -174.70 114 15 PRO A 29 ? ? -69.81 3.52 115 16 SER A 2 ? ? -162.23 116.39 116 16 VAL A 22 ? ? -63.20 96.25 117 16 ASP A 25 ? ? -38.79 143.48 118 16 PRO A 29 ? ? -69.77 5.28 119 16 PRO A 76 ? ? -69.75 89.20 120 17 PRO A 10 ? ? -69.77 2.48 121 17 ASN A 11 ? ? -34.34 143.29 122 17 GLU A 13 ? ? -39.05 93.35 123 17 PRO A 27 ? ? -69.81 -174.12 124 17 PRO A 29 ? ? -69.78 2.78 125 18 LEU A 9 ? ? -47.25 157.66 126 18 PRO A 10 ? ? -69.74 2.06 127 18 ASN A 11 ? ? -34.46 143.96 128 18 PRO A 12 ? ? -69.76 2.53 129 18 GLU A 13 ? ? -47.06 91.00 130 18 VAL A 22 ? ? -54.92 103.65 131 18 SER A 24 ? ? -160.33 118.79 132 18 ASP A 25 ? ? -34.28 140.19 133 18 PRO A 29 ? ? -69.74 4.05 134 18 ILE A 31 ? ? -120.53 -60.60 135 18 PRO A 76 ? ? -69.80 -174.93 136 19 PRO A 10 ? ? -69.76 79.70 137 19 PRO A 12 ? ? -69.80 1.15 138 19 PRO A 27 ? ? -69.76 -174.36 139 19 PRO A 29 ? ? -69.80 3.17 140 19 SER A 74 ? ? -37.61 149.58 141 19 PRO A 76 ? ? -69.76 91.75 142 19 SER A 78 ? ? -45.98 151.44 143 20 SER A 5 ? ? -103.05 43.29 144 20 PRO A 12 ? ? -69.74 2.14 145 20 GLU A 13 ? ? -55.00 96.46 146 20 VAL A 22 ? ? -60.09 97.07 147 20 PRO A 27 ? ? -69.76 -177.42 148 20 PRO A 29 ? ? -69.77 4.00 149 20 ARG A 38 ? ? -37.51 144.99 #