data_2CVB # _entry.id 2CVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CVB RCSB RCSB024661 WWPDB D_1000024661 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001681.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CVB _pdbx_database_status.recvd_initial_deposition_date 2005-06-01 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ebihara, A.' 1 'Yokoyama, S.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ebihara, A.' 1 primary 'Yokoyama, S.' 2 primary 'Kuramitsu, S.' 3 # _cell.entry_id 2CVB _cell.length_a 73.420 _cell.length_b 73.420 _cell.length_c 96.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CVB _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'probable thiol-disulfide isomerase/thioredoxin' 21531.039 1 ? ? ? ? 2 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thioredoxin-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)LQYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVF(MSE)CNHCPYVKGSIGELVALAERYRGKVAFVGIN ANDYEKYPEDAPEK(MSE)AAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSH DLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNEPEVRIG ; _entity_poly.pdbx_seq_one_letter_code_can ;MLQYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYP EDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG EEPPLKEAPAIGCTIKWRPGNEPEVRIG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001681.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LEU n 1 3 GLN n 1 4 TYR n 1 5 PRO n 1 6 GLU n 1 7 LEU n 1 8 PRO n 1 9 LEU n 1 10 GLU n 1 11 SER n 1 12 PRO n 1 13 LEU n 1 14 ILE n 1 15 ASP n 1 16 ALA n 1 17 GLU n 1 18 LEU n 1 19 PRO n 1 20 ASP n 1 21 PRO n 1 22 ARG n 1 23 GLY n 1 24 GLY n 1 25 ARG n 1 26 TYR n 1 27 ARG n 1 28 LEU n 1 29 SER n 1 30 GLN n 1 31 PHE n 1 32 HIS n 1 33 GLU n 1 34 PRO n 1 35 LEU n 1 36 LEU n 1 37 ALA n 1 38 VAL n 1 39 VAL n 1 40 PHE n 1 41 MSE n 1 42 CYS n 1 43 ASN n 1 44 HIS n 1 45 CYS n 1 46 PRO n 1 47 TYR n 1 48 VAL n 1 49 LYS n 1 50 GLY n 1 51 SER n 1 52 ILE n 1 53 GLY n 1 54 GLU n 1 55 LEU n 1 56 VAL n 1 57 ALA n 1 58 LEU n 1 59 ALA n 1 60 GLU n 1 61 ARG n 1 62 TYR n 1 63 ARG n 1 64 GLY n 1 65 LYS n 1 66 VAL n 1 67 ALA n 1 68 PHE n 1 69 VAL n 1 70 GLY n 1 71 ILE n 1 72 ASN n 1 73 ALA n 1 74 ASN n 1 75 ASP n 1 76 TYR n 1 77 GLU n 1 78 LYS n 1 79 TYR n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 ALA n 1 84 PRO n 1 85 GLU n 1 86 LYS n 1 87 MSE n 1 88 ALA n 1 89 ALA n 1 90 PHE n 1 91 ALA n 1 92 GLU n 1 93 GLU n 1 94 HIS n 1 95 GLY n 1 96 ILE n 1 97 PHE n 1 98 PHE n 1 99 PRO n 1 100 TYR n 1 101 LEU n 1 102 LEU n 1 103 ASP n 1 104 GLU n 1 105 THR n 1 106 GLN n 1 107 GLU n 1 108 VAL n 1 109 ALA n 1 110 LYS n 1 111 ALA n 1 112 TYR n 1 113 ARG n 1 114 ALA n 1 115 LEU n 1 116 ARG n 1 117 THR n 1 118 PRO n 1 119 GLU n 1 120 VAL n 1 121 PHE n 1 122 LEU n 1 123 PHE n 1 124 ASP n 1 125 GLU n 1 126 ARG n 1 127 ARG n 1 128 LEU n 1 129 LEU n 1 130 ARG n 1 131 TYR n 1 132 HIS n 1 133 GLY n 1 134 ARG n 1 135 VAL n 1 136 ASN n 1 137 ASP n 1 138 ASN n 1 139 PRO n 1 140 LYS n 1 141 ASP n 1 142 PRO n 1 143 SER n 1 144 LYS n 1 145 VAL n 1 146 GLN n 1 147 SER n 1 148 HIS n 1 149 ASP n 1 150 LEU n 1 151 GLU n 1 152 ALA n 1 153 ALA n 1 154 ILE n 1 155 GLU n 1 156 ALA n 1 157 LEU n 1 158 LEU n 1 159 ARG n 1 160 GLY n 1 161 GLU n 1 162 GLU n 1 163 PRO n 1 164 PRO n 1 165 LEU n 1 166 LYS n 1 167 GLU n 1 168 ALA n 1 169 PRO n 1 170 ALA n 1 171 ILE n 1 172 GLY n 1 173 CYS n 1 174 THR n 1 175 ILE n 1 176 LYS n 1 177 TRP n 1 178 ARG n 1 179 PRO n 1 180 GLY n 1 181 ASN n 1 182 GLU n 1 183 PRO n 1 184 GLU n 1 185 VAL n 1 186 ARG n 1 187 ILE n 1 188 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SKQ0_THET8 _struct_ref.pdbx_db_accession Q5SKQ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLQYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYP EDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG EEPPLKEAPAIGCTIKWRPGNEPEVRIG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CVB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 188 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SKQ0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 188 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CVB MSE A 1 ? UNP Q5SKQ0 MET 1 'MODIFIED RESIDUE' 1 1 1 2CVB MSE A 41 ? UNP Q5SKQ0 MET 41 'MODIFIED RESIDUE' 41 2 1 2CVB MSE A 87 ? UNP Q5SKQ0 MET 87 'MODIFIED RESIDUE' 87 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CVB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 59.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details '22% PEG3350, 0.3M diammonium hydrogen citrate, pH 5.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-05-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI DOUBLE-CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.90000 1.0 2 0.97919 1.0 3 0.97942 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.90000, 0.97919, 0.97942' # _reflns.entry_id 2CVB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.18 _reflns.d_resolution_high 1.80 _reflns.number_obs ? _reflns.number_all 23975 _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.9 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 9.54 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.188 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.1 _reflns_shell.pdbx_redundancy 9.58 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2CVB _refine.ls_number_reflns_obs 23953 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 1528471.62 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.25 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_all 0.213 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error .005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2372 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.6 _refine.aniso_B[1][1] -.93 _refine.aniso_B[2][2] -.93 _refine.aniso_B[3][3] 1.85 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .38742 _refine.solvent_model_param_bsol 26.7948 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CVB _refine_analyze.Luzzati_coordinate_error_obs .21 _refine_analyze.Luzzati_sigma_a_obs .09 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .24 _refine_analyze.Luzzati_sigma_a_free .14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1500 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1619 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 24.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.12 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.12 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.64 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.94 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 3605 _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 97.3 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error .014 _refine_ls_shell.percent_reflns_R_free 9.7 _refine_ls_shell.number_reflns_R_free 387 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2CVB _struct.title 'Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8' _struct.pdbx_descriptor 'probable thiol-disulfide isomerase/thioredoxin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CVB _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'Thioredoxin, Redox protein, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? PHE A 31 ? SER A 29 PHE A 31 5 ? 3 HELX_P HELX_P2 2 CYS A 45 ? GLY A 50 ? CYS A 45 GLY A 50 1 ? 6 HELX_P HELX_P3 3 SER A 51 ? TYR A 62 ? SER A 51 TYR A 62 1 ? 12 HELX_P HELX_P4 4 TYR A 79 ? ASP A 82 ? TYR A 79 ASP A 82 5 ? 4 HELX_P HELX_P5 5 ALA A 83 ? GLY A 95 ? ALA A 83 GLY A 95 1 ? 13 HELX_P HELX_P6 6 GLN A 106 ? TYR A 112 ? GLN A 106 TYR A 112 1 ? 7 HELX_P HELX_P7 7 ASP A 141 ? VAL A 145 ? ASP A 141 VAL A 145 5 ? 5 HELX_P HELX_P8 8 HIS A 148 ? ARG A 159 ? HIS A 148 ARG A 159 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 173 SG ? ? A CYS 45 A CYS 173 1_555 ? ? ? ? ? ? ? 2.055 ? covale1 covale ? ? A PHE 40 C ? ? ? 1_555 A MSE 41 N ? ? A PHE 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 41 C ? ? ? 1_555 A CYS 42 N ? ? A MSE 41 A CYS 42 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A LYS 86 C ? ? ? 1_555 A MSE 87 N ? ? A LYS 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 87 C ? ? ? 1_555 A ALA 88 N ? ? A MSE 87 A ALA 88 1_555 ? ? ? ? ? ? ? 1.332 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 117 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 117 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 118 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 118 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 17 ? PRO A 19 ? GLU A 17 PRO A 19 A 2 ARG A 25 ? ARG A 27 ? ARG A 25 ARG A 27 B 1 TYR A 100 ? LEU A 102 ? TYR A 100 LEU A 102 B 2 VAL A 66 ? ASN A 72 ? VAL A 66 ASN A 72 B 3 LEU A 35 ? MSE A 41 ? LEU A 35 MSE A 41 B 4 GLU A 119 ? PHE A 123 ? GLU A 119 PHE A 123 B 5 LEU A 129 ? GLY A 133 ? LEU A 129 GLY A 133 C 1 ARG A 116 ? THR A 117 ? ARG A 116 THR A 117 C 2 CYS A 173 ? THR A 174 ? CYS A 173 THR A 174 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 18 O TYR A 26 ? O TYR A 26 B 1 2 O LEU A 101 ? O LEU A 101 N GLY A 70 ? N GLY A 70 B 2 3 O ALA A 67 ? O ALA A 67 N ALA A 37 ? N ALA A 37 B 3 4 N LEU A 36 ? N LEU A 36 O PHE A 123 ? O PHE A 123 B 4 5 N LEU A 122 ? N LEU A 122 O TYR A 131 ? O TYR A 131 C 1 2 N THR A 117 ? N THR A 117 O CYS A 173 ? O CYS A 173 # _database_PDB_matrix.entry_id 2CVB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 2CVB _atom_sites.fract_transf_matrix[1][1] 0.013620 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013620 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010319 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 MSE 41 41 41 MSE MSE A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 MSE 87 87 87 MSE MSE A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 CYS 173 173 173 CYS CYS A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 GLY 188 188 188 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 189 1 HOH HOH A . B 2 HOH 2 190 2 HOH HOH A . B 2 HOH 3 191 3 HOH HOH A . B 2 HOH 4 192 4 HOH HOH A . B 2 HOH 5 193 5 HOH HOH A . B 2 HOH 6 194 6 HOH HOH A . B 2 HOH 7 195 7 HOH HOH A . B 2 HOH 8 196 8 HOH HOH A . B 2 HOH 9 197 9 HOH HOH A . B 2 HOH 10 198 10 HOH HOH A . B 2 HOH 11 199 11 HOH HOH A . B 2 HOH 12 200 12 HOH HOH A . B 2 HOH 13 201 13 HOH HOH A . B 2 HOH 14 202 14 HOH HOH A . B 2 HOH 15 203 15 HOH HOH A . B 2 HOH 16 204 16 HOH HOH A . B 2 HOH 17 205 17 HOH HOH A . B 2 HOH 18 206 18 HOH HOH A . B 2 HOH 19 207 19 HOH HOH A . B 2 HOH 20 208 20 HOH HOH A . B 2 HOH 21 209 21 HOH HOH A . B 2 HOH 22 210 22 HOH HOH A . B 2 HOH 23 211 23 HOH HOH A . B 2 HOH 24 212 24 HOH HOH A . B 2 HOH 25 213 25 HOH HOH A . B 2 HOH 26 214 26 HOH HOH A . B 2 HOH 27 215 27 HOH HOH A . B 2 HOH 28 216 28 HOH HOH A . B 2 HOH 29 217 29 HOH HOH A . B 2 HOH 30 218 30 HOH HOH A . B 2 HOH 31 219 31 HOH HOH A . B 2 HOH 32 220 32 HOH HOH A . B 2 HOH 33 221 33 HOH HOH A . B 2 HOH 34 222 34 HOH HOH A . B 2 HOH 35 223 35 HOH HOH A . B 2 HOH 36 224 36 HOH HOH A . B 2 HOH 37 225 37 HOH HOH A . B 2 HOH 38 226 38 HOH HOH A . B 2 HOH 39 227 39 HOH HOH A . B 2 HOH 40 228 40 HOH HOH A . B 2 HOH 41 229 41 HOH HOH A . B 2 HOH 42 230 42 HOH HOH A . B 2 HOH 43 231 43 HOH HOH A . B 2 HOH 44 232 44 HOH HOH A . B 2 HOH 45 233 45 HOH HOH A . B 2 HOH 46 234 46 HOH HOH A . B 2 HOH 47 235 47 HOH HOH A . B 2 HOH 48 236 48 HOH HOH A . B 2 HOH 49 237 49 HOH HOH A . B 2 HOH 50 238 50 HOH HOH A . B 2 HOH 51 239 51 HOH HOH A . B 2 HOH 52 240 52 HOH HOH A . B 2 HOH 53 241 53 HOH HOH A . B 2 HOH 54 242 54 HOH HOH A . B 2 HOH 55 243 55 HOH HOH A . B 2 HOH 56 244 56 HOH HOH A . B 2 HOH 57 245 57 HOH HOH A . B 2 HOH 58 246 58 HOH HOH A . B 2 HOH 59 247 59 HOH HOH A . B 2 HOH 60 248 60 HOH HOH A . B 2 HOH 61 249 61 HOH HOH A . B 2 HOH 62 250 62 HOH HOH A . B 2 HOH 63 251 63 HOH HOH A . B 2 HOH 64 252 64 HOH HOH A . B 2 HOH 65 253 65 HOH HOH A . B 2 HOH 66 254 66 HOH HOH A . B 2 HOH 67 255 67 HOH HOH A . B 2 HOH 68 256 68 HOH HOH A . B 2 HOH 69 257 69 HOH HOH A . B 2 HOH 70 258 70 HOH HOH A . B 2 HOH 71 259 71 HOH HOH A . B 2 HOH 72 260 72 HOH HOH A . B 2 HOH 73 261 73 HOH HOH A . B 2 HOH 74 262 74 HOH HOH A . B 2 HOH 75 263 75 HOH HOH A . B 2 HOH 76 264 76 HOH HOH A . B 2 HOH 77 265 77 HOH HOH A . B 2 HOH 78 266 78 HOH HOH A . B 2 HOH 79 267 79 HOH HOH A . B 2 HOH 80 268 80 HOH HOH A . B 2 HOH 81 269 81 HOH HOH A . B 2 HOH 82 270 82 HOH HOH A . B 2 HOH 83 271 83 HOH HOH A . B 2 HOH 84 272 84 HOH HOH A . B 2 HOH 85 273 85 HOH HOH A . B 2 HOH 86 274 86 HOH HOH A . B 2 HOH 87 275 87 HOH HOH A . B 2 HOH 88 276 88 HOH HOH A . B 2 HOH 89 277 89 HOH HOH A . B 2 HOH 90 278 90 HOH HOH A . B 2 HOH 91 279 91 HOH HOH A . B 2 HOH 92 280 92 HOH HOH A . B 2 HOH 93 281 93 HOH HOH A . B 2 HOH 94 282 94 HOH HOH A . B 2 HOH 95 283 95 HOH HOH A . B 2 HOH 96 284 96 HOH HOH A . B 2 HOH 97 285 97 HOH HOH A . B 2 HOH 98 286 98 HOH HOH A . B 2 HOH 99 287 99 HOH HOH A . B 2 HOH 100 288 100 HOH HOH A . B 2 HOH 101 289 101 HOH HOH A . B 2 HOH 102 290 102 HOH HOH A . B 2 HOH 103 291 103 HOH HOH A . B 2 HOH 104 292 104 HOH HOH A . B 2 HOH 105 293 105 HOH HOH A . B 2 HOH 106 294 106 HOH HOH A . B 2 HOH 107 295 107 HOH HOH A . B 2 HOH 108 296 108 HOH HOH A . B 2 HOH 109 297 109 HOH HOH A . B 2 HOH 110 298 110 HOH HOH A . B 2 HOH 111 299 111 HOH HOH A . B 2 HOH 112 300 112 HOH HOH A . B 2 HOH 113 301 113 HOH HOH A . B 2 HOH 114 302 114 HOH HOH A . B 2 HOH 115 303 115 HOH HOH A . B 2 HOH 116 304 116 HOH HOH A . B 2 HOH 117 305 117 HOH HOH A . B 2 HOH 118 306 118 HOH HOH A . B 2 HOH 119 307 119 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 41 A MSE 41 ? MET SELENOMETHIONINE 2 A MSE 87 A MSE 87 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data reduction' . ? 2 CrystalClear 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 42 ? ? -170.62 -172.43 2 1 ASN A 138 ? ? -157.57 71.33 3 1 HIS A 148 ? ? -107.27 75.60 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MSE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MSE _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #