HEADER HYDROLASE 20-JUN-05 2CWI TITLE X-RAY CRYSTAL STRUCTURE ANALYSIS OF RECOMBINANT WILD-TYPE CANINE MILK TITLE 2 LYSOZYME (APO-TYPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C, MILK ISOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 STRAIN: FAMILIARIS; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC3 KEYWDS LUSOZYME C, MILK ISOZYME, CALCIUM BINDING LYSOZYME, 1, 4-BETA-N- KEYWDS 2 ACETYLMURAMIDASE C, BACTERIOLYTIC ENZYME, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.AKIEDA,M.YASUI,T.AIZAWA,M.YAO,N.WATANABE,I.TANAKA,M.DEMURA, AUTHOR 2 K.KAWANO,K.NITTA REVDAT 3 24-JAN-18 2CWI 1 REMARK REVDAT 2 24-FEB-09 2CWI 1 VERSN REVDAT 1 20-JUN-06 2CWI 0 JRNL AUTH D.AKIEDA,M.YASUI,T.AIZAWA,M.YAO,N.WATANABE,I.TANAKA, JRNL AUTH 2 M.DEMURA,K.KAWANO,K.NITTA JRNL TITL CONSTRUCTION OF AN EXPRESSION SYSTEM OF CANINE MILK LYSOZYME JRNL TITL 2 IN THE METHYLOTROPHIC YEAST PICHIA PASTORIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2090 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1722 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2814 ; 2.234 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4050 ; 1.102 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 8.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2332 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 432 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 480 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1966 ; 0.262 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1093 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 1.291 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 1.478 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2018 ; 2.439 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 814 ; 3.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 796 ; 5.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000024703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SILICON SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XFIT REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15888 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 65.938 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XFIT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA HEPES 2%, PEG400, 2M AMSO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.17133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.58567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3402 O HOH A 3437 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 B 2396 S SO4 B 4396 1445 0.33 REMARK 500 O1 SO4 A 1396 O4 SO4 A 3396 1565 0.65 REMARK 500 O2 SO4 B 2396 O2 SO4 B 4396 1445 0.80 REMARK 500 S SO4 A 1396 S SO4 A 3396 1565 0.84 REMARK 500 O4 SO4 B 2396 O1 SO4 B 4396 1445 2.12 REMARK 500 O3 SO4 B 2396 O HOH B 4414 1445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 47 CB ASN A 47 CG 0.147 REMARK 500 LYS B 122 CD LYS B 122 CE 0.157 REMARK 500 TYR B 123 CE2 TYR B 123 CD2 -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 119 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 18 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 119 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 46 67.27 -10.32 REMARK 500 ASN A 47 -106.63 130.52 REMARK 500 SER A 51 176.45 -54.40 REMARK 500 CYS A 80 -38.74 -37.01 REMARK 500 CYS A 115 -45.43 -135.18 REMARK 500 SER B 51 179.37 -41.45 REMARK 500 SER B 69 -4.68 -144.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 47 SER A 48 145.54 REMARK 500 ASN A 49 GLY A 50 -141.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4396 DBREF 2CWI A 1 129 UNP P81708 LYSC1_CANFA 1 129 DBREF 2CWI B 1 129 UNP P81708 LYSC1_CANFA 1 129 SEQRES 1 A 129 LYS ILE PHE SER LYS CYS GLU LEU ALA ARG LYS LEU LYS SEQRES 2 A 129 SER MET GLY MET ASP GLY PHE HIS GLY TYR SER LEU ALA SEQRES 3 A 129 ASN TRP VAL CYS MET ALA GLU TYR GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA PHE ASN GLY ARG ASN SER ASN GLY SER SER SEQRES 5 A 129 ASP TYR GLY ILE PHE GLN LEU ASN SER LYS TRP TRP CYS SEQRES 6 A 129 LYS SER ASN SER HIS SER SER ALA ASN ALA CYS ASN ILE SEQRES 7 A 129 MET CYS SER LYS PHE LEU ASP ASP ASN ILE ASP ASP ASP SEQRES 8 A 129 ILE ALA CYS ALA LYS ARG VAL VAL LYS ASP PRO ASN GLY SEQRES 9 A 129 MET SER ALA TRP VAL ALA TRP VAL LYS HIS CYS LYS GLY SEQRES 10 A 129 LYS ASP LEU SER LYS TYR LEU ALA SER CYS ASN LEU SEQRES 1 B 129 LYS ILE PHE SER LYS CYS GLU LEU ALA ARG LYS LEU LYS SEQRES 2 B 129 SER MET GLY MET ASP GLY PHE HIS GLY TYR SER LEU ALA SEQRES 3 B 129 ASN TRP VAL CYS MET ALA GLU TYR GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA PHE ASN GLY ARG ASN SER ASN GLY SER SER SEQRES 5 B 129 ASP TYR GLY ILE PHE GLN LEU ASN SER LYS TRP TRP CYS SEQRES 6 B 129 LYS SER ASN SER HIS SER SER ALA ASN ALA CYS ASN ILE SEQRES 7 B 129 MET CYS SER LYS PHE LEU ASP ASP ASN ILE ASP ASP ASP SEQRES 8 B 129 ILE ALA CYS ALA LYS ARG VAL VAL LYS ASP PRO ASN GLY SEQRES 9 B 129 MET SER ALA TRP VAL ALA TRP VAL LYS HIS CYS LYS GLY SEQRES 10 B 129 LYS ASP LEU SER LYS TYR LEU ALA SER CYS ASN LEU HET SO4 A1396 5 HET SO4 A3396 5 HET SO4 B2396 5 HET SO4 B4396 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *98(H2 O) HELIX 1 1 SER A 4 MET A 15 1 12 HELIX 2 2 GLY A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 MET A 79 ASP A 85 5 7 HELIX 5 5 ILE A 88 VAL A 99 1 12 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 SER B 4 MET B 15 1 12 HELIX 9 9 GLY B 19 TYR B 23 5 5 HELIX 10 10 SER B 24 ASN B 37 1 14 HELIX 11 11 MET B 79 ASP B 85 5 7 HELIX 12 12 ILE B 88 LYS B 100 1 13 HELIX 13 13 ASN B 103 ALA B 107 5 5 HELIX 14 14 TRP B 108 CYS B 115 1 8 SHEET 1 A 3 PHE A 43 ASN A 44 0 SHEET 2 A 3 ASP A 53 TYR A 54 -1 O ASP A 53 N ASN A 44 SHEET 3 A 3 LEU A 59 ASN A 60 -1 O LEU A 59 N TYR A 54 SHEET 1 B 3 PHE B 43 ASN B 44 0 SHEET 2 B 3 ASP B 53 TYR B 54 -1 O ASP B 53 N ASN B 44 SHEET 3 B 3 LEU B 59 ASN B 60 -1 O LEU B 59 N TYR B 54 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 65 CYS A 80 1555 1555 2.14 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.01 SSBOND 5 CYS B 6 CYS B 127 1555 1555 2.02 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.03 SSBOND 7 CYS B 65 CYS B 80 1555 1555 2.05 SSBOND 8 CYS B 76 CYS B 94 1555 1555 2.07 LINK S SO4 A1396 O1 SO4 A3396 1555 1565 1.24 LINK S SO4 A1396 O2 SO4 A3396 1555 1565 1.76 LINK S SO4 A1396 O4 SO4 A3396 1555 1565 1.65 LINK O1 SO4 A1396 S SO4 A3396 1555 1565 1.72 LINK O2 SO4 A1396 O1 SO4 A3396 1555 1565 1.16 LINK O3 SO4 A1396 S SO4 A3396 1555 1565 0.99 LINK O3 SO4 A1396 O1 SO4 A3396 1555 1565 1.48 LINK O3 SO4 A1396 O2 SO4 A3396 1555 1565 1.99 LINK O3 SO4 A1396 O3 SO4 A3396 1555 1565 1.23 LINK O4 SO4 A1396 S SO4 A3396 1555 1565 1.93 LINK O4 SO4 A1396 O2 SO4 A3396 1555 1565 1.20 LINK O3 SO4 A1396 S SO4 A3396 1545 1555 0.99 LINK O4 SO4 A1396 S SO4 A3396 1545 1555 1.93 LINK O1 SO4 A1396 S SO4 A3396 1545 1555 1.72 LINK O3 SO4 A1396 O1 SO4 A3396 1545 1555 1.48 LINK S SO4 A1396 O1 SO4 A3396 1545 1555 1.24 LINK O2 SO4 A1396 O1 SO4 A3396 1545 1555 1.16 LINK O3 SO4 A1396 O2 SO4 A3396 1545 1555 1.99 LINK O4 SO4 A1396 O2 SO4 A3396 1545 1555 1.20 LINK S SO4 A1396 O2 SO4 A3396 1545 1555 1.76 LINK O3 SO4 A1396 O3 SO4 A3396 1545 1555 1.23 LINK S SO4 A1396 O4 SO4 A3396 1545 1555 1.65 LINK O1 SO4 B2396 S SO4 B4396 1555 1445 1.45 LINK S SO4 B2396 O4 SO4 B4396 1555 1445 1.44 LINK S SO4 B2396 O1 SO4 B4396 1555 1445 1.85 LINK S SO4 B2396 O2 SO4 B4396 1555 1445 1.70 LINK O1 SO4 B2396 O3 SO4 B4396 1555 1445 1.52 LINK O1 SO4 B2396 O1 SO4 B4396 1555 1445 1.16 LINK O2 SO4 B2396 S SO4 B4396 1555 1445 1.55 LINK O3 SO4 B2396 S SO4 B4396 1555 1445 1.86 LINK O3 SO4 B2396 O3 SO4 B4396 1555 1445 1.51 LINK O3 SO4 B2396 O4 SO4 B4396 1555 1445 1.84 LINK O4 SO4 B2396 S SO4 B4396 1555 1445 1.53 LINK O4 SO4 B2396 O4 SO4 B4396 1555 1445 0.91 LINK O1 SO4 B2396 S SO4 B4396 1665 1555 1.45 LINK O2 SO4 B2396 S SO4 B4396 1665 1555 1.55 LINK O3 SO4 B2396 S SO4 B4396 1665 1555 1.86 LINK O4 SO4 B2396 S SO4 B4396 1665 1555 1.53 LINK S SO4 B2396 O1 SO4 B4396 1665 1555 1.85 LINK O1 SO4 B2396 O1 SO4 B4396 1665 1555 1.16 LINK S SO4 B2396 O2 SO4 B4396 1665 1555 1.70 LINK S SO4 B2396 O3 SO4 B4396 1665 1555 1.44 LINK O1 SO4 B2396 O3 SO4 B4396 1665 1555 1.52 LINK O3 SO4 B2396 O3 SO4 B4396 1665 1555 1.51 LINK S SO4 B2396 O4 SO4 B4396 1665 1555 1.44 LINK O3 SO4 B2396 O4 SO4 B4396 1665 1555 1.84 LINK O4 SO4 B2396 O4 SO4 B4396 1665 1555 0.91 LINK S SO4 B2396 O3 SO4 B4396 1555 1445 1.44 CISPEP 1 ARG A 46 ASN A 47 0 9.56 SITE 1 AC1 7 PHE A 20 LYS A 96 LYS A 100 LYS A 113 SITE 2 AC1 7 HIS A 114 SO4 A3396 HOH A3442 SITE 1 AC2 6 PHE B 20 LYS B 100 LYS B 113 HIS B 114 SITE 2 AC2 6 SO4 B4396 HOH B4414 SITE 1 AC3 6 PHE A 20 LYS A 100 LYS A 113 HIS A 114 SITE 2 AC3 6 SO4 A1396 HOH A3434 SITE 1 AC4 6 PHE B 20 LYS B 100 LYS B 113 HIS B 114 SITE 2 AC4 6 SO4 B2396 HOH B4414 CRYST1 31.048 31.048 199.757 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032208 0.018595 0.000000 0.00000 SCALE2 0.000000 0.037191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005006 0.00000