data_2CXH # _entry.id 2CXH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CXH RCSB RCSB024735 WWPDB D_1000024735 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ape001001443.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CXH _pdbx_database_status.recvd_initial_deposition_date 2005-06-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kawazoe, M.' 1 'Takemoto, C.' 2 'Hanawa-Suetsugu, K.' 3 'Kaminishi, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kawazoe, M.' 1 primary 'Takemoto, C.' 2 primary 'Hanawa-Suetsugu, K.' 3 primary 'Kaminishi, T.' 4 primary 'Terada, T.' 5 primary 'Shirouzu, M.' 6 primary 'Yokoyama, S.' 7 # _cell.entry_id 2CXH _cell.length_a 36.171 _cell.length_b 47.364 _cell.length_c 124.675 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2CXH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable brix-domain ribosomal biogenesis protein' 23774.678 1 ? ? ? ? 2 water nat water 18.015 150 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGLVPAGSH(MSE)LGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYS (MSE)EELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLD SGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGGAPVGP(MSE)LRLGKPAE(MSE)VKRGRRV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPAGSHMLGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAI IRGADRIVVVGERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVI AFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGGAPVGPMLRLGKPAEMVKRGRRV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ape001001443.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ALA n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 LEU n 1 23 GLY n 1 24 GLY n 1 25 LYS n 1 26 GLY n 1 27 ARG n 1 28 PRO n 1 29 SER n 1 30 GLY n 1 31 VAL n 1 32 GLY n 1 33 GLY n 1 34 TYR n 1 35 ARG n 1 36 ILE n 1 37 LEU n 1 38 VAL n 1 39 THR n 1 40 THR n 1 41 SER n 1 42 ARG n 1 43 ARG n 1 44 PRO n 1 45 SER n 1 46 PRO n 1 47 ARG n 1 48 ILE n 1 49 ARG n 1 50 SER n 1 51 PHE n 1 52 VAL n 1 53 LYS n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 ALA n 1 58 THR n 1 59 ILE n 1 60 PRO n 1 61 GLY n 1 62 ALA n 1 63 PHE n 1 64 ARG n 1 65 PHE n 1 66 THR n 1 67 ARG n 1 68 GLY n 1 69 HIS n 1 70 TYR n 1 71 SER n 1 72 MSE n 1 73 GLU n 1 74 GLU n 1 75 LEU n 1 76 ALA n 1 77 ARG n 1 78 GLU n 1 79 ALA n 1 80 ILE n 1 81 ILE n 1 82 ARG n 1 83 GLY n 1 84 ALA n 1 85 ASP n 1 86 ARG n 1 87 ILE n 1 88 VAL n 1 89 VAL n 1 90 VAL n 1 91 GLY n 1 92 GLU n 1 93 ARG n 1 94 ARG n 1 95 GLY n 1 96 ASN n 1 97 PRO n 1 98 GLY n 1 99 ILE n 1 100 ILE n 1 101 ARG n 1 102 VAL n 1 103 TYR n 1 104 ALA n 1 105 VAL n 1 106 GLU n 1 107 GLY n 1 108 PRO n 1 109 GLU n 1 110 ARG n 1 111 PRO n 1 112 ASP n 1 113 ASN n 1 114 ILE n 1 115 VAL n 1 116 SER n 1 117 PHE n 1 118 ILE n 1 119 VAL n 1 120 LYS n 1 121 GLY n 1 122 VAL n 1 123 SER n 1 124 LEU n 1 125 SER n 1 126 ARG n 1 127 GLU n 1 128 ARG n 1 129 ARG n 1 130 TRP n 1 131 GLY n 1 132 LEU n 1 133 PRO n 1 134 SER n 1 135 LEU n 1 136 ARG n 1 137 GLY n 1 138 GLY n 1 139 GLU n 1 140 VAL n 1 141 LEU n 1 142 VAL n 1 143 ALA n 1 144 ARG n 1 145 PRO n 1 146 LEU n 1 147 ASP n 1 148 SER n 1 149 GLY n 1 150 VAL n 1 151 ALA n 1 152 VAL n 1 153 GLU n 1 154 PHE n 1 155 ALA n 1 156 ASP n 1 157 ALA n 1 158 PHE n 1 159 VAL n 1 160 ILE n 1 161 ALA n 1 162 PHE n 1 163 HIS n 1 164 ALA n 1 165 ARG n 1 166 LEU n 1 167 LYS n 1 168 PRO n 1 169 PRO n 1 170 GLU n 1 171 ALA n 1 172 ALA n 1 173 GLY n 1 174 TYR n 1 175 VAL n 1 176 GLU n 1 177 ALA n 1 178 VAL n 1 179 ILE n 1 180 GLU n 1 181 SER n 1 182 LEU n 1 183 ASP n 1 184 ALA n 1 185 ARG n 1 186 THR n 1 187 VAL n 1 188 ALA n 1 189 VAL n 1 190 THR n 1 191 PHE n 1 192 ARG n 1 193 TYR n 1 194 GLY n 1 195 GLY n 1 196 ALA n 1 197 PRO n 1 198 VAL n 1 199 GLY n 1 200 PRO n 1 201 MSE n 1 202 LEU n 1 203 ARG n 1 204 LEU n 1 205 GLY n 1 206 LYS n 1 207 PRO n 1 208 ALA n 1 209 GLU n 1 210 MSE n 1 211 VAL n 1 212 LYS n 1 213 ARG n 1 214 GLY n 1 215 ARG n 1 216 ARG n 1 217 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aeropyrum _entity_src_gen.pdbx_gene_src_gene APE1443 _entity_src_gen.gene_src_species 'Aeropyrum pernix' _entity_src_gen.gene_src_strain K1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aeropyrum pernix' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272557 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 (DE3) pRARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRIX_AERPE _struct_ref.pdbx_db_accession Q9YC08 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGII RVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIE SLDARTVAVTFRYGGAPVGPMLRLGKPAEMVKRGRRV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CXH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9YC08 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 197 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CXH MSE A 1 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -19 1 1 2CXH GLY A 2 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -18 2 1 2CXH SER A 3 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -17 3 1 2CXH SER A 4 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -16 4 1 2CXH HIS A 5 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -15 5 1 2CXH HIS A 6 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -14 6 1 2CXH HIS A 7 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -13 7 1 2CXH HIS A 8 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -12 8 1 2CXH HIS A 9 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -11 9 1 2CXH HIS A 10 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -10 10 1 2CXH SER A 11 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -9 11 1 2CXH SER A 12 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -8 12 1 2CXH GLY A 13 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -7 13 1 2CXH LEU A 14 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -6 14 1 2CXH VAL A 15 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -5 15 1 2CXH PRO A 16 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -4 16 1 2CXH ALA A 17 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -3 17 1 2CXH GLY A 18 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -2 18 1 2CXH SER A 19 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' -1 19 1 2CXH HIS A 20 ? UNP Q9YC08 ? ? 'CLONING ARTIFACT' 0 20 1 2CXH MSE A 21 ? UNP Q9YC08 MET 1 'MODIFIED RESIDUE' 1 21 1 2CXH MSE A 72 ? UNP Q9YC08 MET 52 'MODIFIED RESIDUE' 52 22 1 2CXH MSE A 201 ? UNP Q9YC08 MET 181 'MODIFIED RESIDUE' 181 23 1 2CXH MSE A 210 ? UNP Q9YC08 MET 190 'MODIFIED RESIDUE' 190 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CXH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.266920 _exptl_crystal.density_percent_sol 45.741364 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ;0.01M Tris-HCl pH 8.0, 0.15M NaCl, 0.001M DTT, 0.05M tri-sodium citrate pH 5.6, 10% v/v 2-propanol, 10% w/v polyethylene glycol 4000, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-04-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97920 # _reflns.entry_id 2CXH _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37.796 _reflns.d_resolution_high 1.697 _reflns.number_obs 22973 _reflns.number_all ? _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 23.616 _reflns.B_iso_Wilson_estimate 11.0 _reflns.pdbx_redundancy 8.36835 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.608 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 22973 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2CXH _refine.ls_number_reflns_obs 19230 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1210188.93 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.71 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.209 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 920 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 19.9 _refine.aniso_B[1][1] -2.10 _refine.aniso_B[2][2] 3.25 _refine.aniso_B[3][3] -1.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.36566 _refine.solvent_model_param_bsol 38.244 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CXH _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.08 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1390 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 150 _refine_hist.number_atoms_total 1540 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 37.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.91 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.32 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.07 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.38 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.59 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 3066 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.percent_reflns_obs 95.3 _refine_ls_shell.R_factor_R_free 0.214 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 4.5 _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2CXH _struct.title 'Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1' _struct.pdbx_descriptor 'Probable brix-domain ribosomal biogenesis protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CXH _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;BRIX domain, 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis, RNA-binding, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 45 ? ALA A 57 ? SER A 25 ALA A 37 1 ? 13 HELX_P HELX_P2 2 SER A 71 ? ARG A 82 ? SER A 51 ARG A 62 1 ? 12 HELX_P HELX_P3 3 LEU A 124 ? ARG A 129 ? LEU A 104 ARG A 109 1 ? 6 HELX_P HELX_P4 4 VAL A 150 ? HIS A 163 ? VAL A 130 HIS A 143 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 71 C ? ? ? 1_555 A MSE 72 N ? ? A SER 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 72 C ? ? ? 1_555 A GLU 73 N ? ? A MSE 52 A GLU 53 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A PRO 200 C ? ? ? 1_555 A MSE 201 N ? ? A PRO 180 A MSE 181 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 201 C ? ? ? 1_555 A LEU 202 N ? ? A MSE 181 A LEU 182 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A GLU 209 C ? ? ? 1_555 A MSE 210 N ? ? A GLU 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 210 C ? ? ? 1_555 A VAL 211 N ? ? A MSE 190 A VAL 191 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 62 ? ARG A 64 ? ALA A 42 ARG A 44 A 2 ARG A 35 ? THR A 40 ? ARG A 15 THR A 20 A 3 ALA A 84 ? ARG A 93 ? ALA A 64 ARG A 73 A 4 ASN A 96 ? ALA A 104 ? ASN A 76 ALA A 84 A 5 ASP A 112 ? SER A 123 ? ASP A 92 SER A 103 A 6 PRO A 197 ? GLY A 205 ? PRO A 177 GLY A 185 A 7 THR A 186 ? ARG A 192 ? THR A 166 ARG A 172 A 8 TYR A 174 ? ASP A 183 ? TYR A 154 ASP A 163 A 9 VAL A 140 ? PRO A 145 ? VAL A 120 PRO A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 63 ? O PHE A 43 N VAL A 38 ? N VAL A 18 A 2 3 N THR A 39 ? N THR A 19 O VAL A 88 ? O VAL A 68 A 3 4 N ILE A 87 ? N ILE A 67 O TYR A 103 ? O TYR A 83 A 4 5 N VAL A 102 ? N VAL A 82 O VAL A 115 ? O VAL A 95 A 5 6 N ILE A 118 ? N ILE A 98 O GLY A 205 ? O GLY A 185 A 6 7 O LEU A 202 ? O LEU A 182 N VAL A 189 ? N VAL A 169 A 7 8 O THR A 186 ? O THR A 166 N LEU A 182 ? N LEU A 162 A 8 9 O ALA A 177 ? O ALA A 157 N VAL A 142 ? N VAL A 122 # _database_PDB_matrix.entry_id 2CXH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CXH _atom_sites.fract_transf_matrix[1][1] 0.027646 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021113 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008021 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ALA 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MSE 21 1 ? ? ? A . n A 1 22 LEU 22 2 ? ? ? A . n A 1 23 GLY 23 3 ? ? ? A . n A 1 24 GLY 24 4 ? ? ? A . n A 1 25 LYS 25 5 ? ? ? A . n A 1 26 GLY 26 6 ? ? ? A . n A 1 27 ARG 27 7 ? ? ? A . n A 1 28 PRO 28 8 ? ? ? A . n A 1 29 SER 29 9 ? ? ? A . n A 1 30 GLY 30 10 ? ? ? A . n A 1 31 VAL 31 11 ? ? ? A . n A 1 32 GLY 32 12 ? ? ? A . n A 1 33 GLY 33 13 13 GLY GLY A . n A 1 34 TYR 34 14 14 TYR TYR A . n A 1 35 ARG 35 15 15 ARG ARG A . n A 1 36 ILE 36 16 16 ILE ILE A . n A 1 37 LEU 37 17 17 LEU LEU A . n A 1 38 VAL 38 18 18 VAL VAL A . n A 1 39 THR 39 19 19 THR THR A . n A 1 40 THR 40 20 20 THR THR A . n A 1 41 SER 41 21 21 SER SER A . n A 1 42 ARG 42 22 22 ARG ARG A . n A 1 43 ARG 43 23 23 ARG ARG A . n A 1 44 PRO 44 24 24 PRO PRO A . n A 1 45 SER 45 25 25 SER SER A . n A 1 46 PRO 46 26 26 PRO PRO A . n A 1 47 ARG 47 27 27 ARG ARG A . n A 1 48 ILE 48 28 28 ILE ILE A . n A 1 49 ARG 49 29 29 ARG ARG A . n A 1 50 SER 50 30 30 SER SER A . n A 1 51 PHE 51 31 31 PHE PHE A . n A 1 52 VAL 52 32 32 VAL VAL A . n A 1 53 LYS 53 33 33 LYS LYS A . n A 1 54 ASP 54 34 34 ASP ASP A . n A 1 55 LEU 55 35 35 LEU LEU A . n A 1 56 SER 56 36 36 SER SER A . n A 1 57 ALA 57 37 37 ALA ALA A . n A 1 58 THR 58 38 38 THR THR A . n A 1 59 ILE 59 39 39 ILE ILE A . n A 1 60 PRO 60 40 40 PRO PRO A . n A 1 61 GLY 61 41 41 GLY GLY A . n A 1 62 ALA 62 42 42 ALA ALA A . n A 1 63 PHE 63 43 43 PHE PHE A . n A 1 64 ARG 64 44 44 ARG ARG A . n A 1 65 PHE 65 45 45 PHE PHE A . n A 1 66 THR 66 46 46 THR THR A . n A 1 67 ARG 67 47 47 ARG ARG A . n A 1 68 GLY 68 48 48 GLY GLY A . n A 1 69 HIS 69 49 49 HIS HIS A . n A 1 70 TYR 70 50 50 TYR TYR A . n A 1 71 SER 71 51 51 SER SER A . n A 1 72 MSE 72 52 52 MSE MSE A . n A 1 73 GLU 73 53 53 GLU GLU A . n A 1 74 GLU 74 54 54 GLU GLU A . n A 1 75 LEU 75 55 55 LEU LEU A . n A 1 76 ALA 76 56 56 ALA ALA A . n A 1 77 ARG 77 57 57 ARG ARG A . n A 1 78 GLU 78 58 58 GLU GLU A . n A 1 79 ALA 79 59 59 ALA ALA A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 ILE 81 61 61 ILE ILE A . n A 1 82 ARG 82 62 62 ARG ARG A . n A 1 83 GLY 83 63 63 GLY GLY A . n A 1 84 ALA 84 64 64 ALA ALA A . n A 1 85 ASP 85 65 65 ASP ASP A . n A 1 86 ARG 86 66 66 ARG ARG A . n A 1 87 ILE 87 67 67 ILE ILE A . n A 1 88 VAL 88 68 68 VAL VAL A . n A 1 89 VAL 89 69 69 VAL VAL A . n A 1 90 VAL 90 70 70 VAL VAL A . n A 1 91 GLY 91 71 71 GLY GLY A . n A 1 92 GLU 92 72 72 GLU GLU A . n A 1 93 ARG 93 73 73 ARG ARG A . n A 1 94 ARG 94 74 74 ARG ARG A . n A 1 95 GLY 95 75 75 GLY GLY A . n A 1 96 ASN 96 76 76 ASN ASN A . n A 1 97 PRO 97 77 77 PRO PRO A . n A 1 98 GLY 98 78 78 GLY GLY A . n A 1 99 ILE 99 79 79 ILE ILE A . n A 1 100 ILE 100 80 80 ILE ILE A . n A 1 101 ARG 101 81 81 ARG ARG A . n A 1 102 VAL 102 82 82 VAL VAL A . n A 1 103 TYR 103 83 83 TYR TYR A . n A 1 104 ALA 104 84 84 ALA ALA A . n A 1 105 VAL 105 85 85 VAL VAL A . n A 1 106 GLU 106 86 86 GLU GLU A . n A 1 107 GLY 107 87 87 GLY GLY A . n A 1 108 PRO 108 88 88 PRO PRO A . n A 1 109 GLU 109 89 89 GLU GLU A . n A 1 110 ARG 110 90 90 ARG ARG A . n A 1 111 PRO 111 91 91 PRO PRO A . n A 1 112 ASP 112 92 92 ASP ASP A . n A 1 113 ASN 113 93 93 ASN ASN A . n A 1 114 ILE 114 94 94 ILE ILE A . n A 1 115 VAL 115 95 95 VAL VAL A . n A 1 116 SER 116 96 96 SER SER A . n A 1 117 PHE 117 97 97 PHE PHE A . n A 1 118 ILE 118 98 98 ILE ILE A . n A 1 119 VAL 119 99 99 VAL VAL A . n A 1 120 LYS 120 100 100 LYS LYS A . n A 1 121 GLY 121 101 101 GLY GLY A . n A 1 122 VAL 122 102 102 VAL VAL A . n A 1 123 SER 123 103 103 SER SER A . n A 1 124 LEU 124 104 104 LEU LEU A . n A 1 125 SER 125 105 105 SER SER A . n A 1 126 ARG 126 106 106 ARG ARG A . n A 1 127 GLU 127 107 107 GLU GLU A . n A 1 128 ARG 128 108 108 ARG ARG A . n A 1 129 ARG 129 109 109 ARG ARG A . n A 1 130 TRP 130 110 110 TRP TRP A . n A 1 131 GLY 131 111 111 GLY GLY A . n A 1 132 LEU 132 112 112 LEU LEU A . n A 1 133 PRO 133 113 113 PRO PRO A . n A 1 134 SER 134 114 114 SER SER A . n A 1 135 LEU 135 115 115 LEU LEU A . n A 1 136 ARG 136 116 116 ARG ARG A . n A 1 137 GLY 137 117 117 GLY GLY A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 GLU 139 119 119 GLU GLU A . n A 1 140 VAL 140 120 120 VAL VAL A . n A 1 141 LEU 141 121 121 LEU LEU A . n A 1 142 VAL 142 122 122 VAL VAL A . n A 1 143 ALA 143 123 123 ALA ALA A . n A 1 144 ARG 144 124 124 ARG ARG A . n A 1 145 PRO 145 125 125 PRO PRO A . n A 1 146 LEU 146 126 126 LEU LEU A . n A 1 147 ASP 147 127 127 ASP ASP A . n A 1 148 SER 148 128 128 SER SER A . n A 1 149 GLY 149 129 129 GLY GLY A . n A 1 150 VAL 150 130 130 VAL VAL A . n A 1 151 ALA 151 131 131 ALA ALA A . n A 1 152 VAL 152 132 132 VAL VAL A . n A 1 153 GLU 153 133 133 GLU GLU A . n A 1 154 PHE 154 134 134 PHE PHE A . n A 1 155 ALA 155 135 135 ALA ALA A . n A 1 156 ASP 156 136 136 ASP ASP A . n A 1 157 ALA 157 137 137 ALA ALA A . n A 1 158 PHE 158 138 138 PHE PHE A . n A 1 159 VAL 159 139 139 VAL VAL A . n A 1 160 ILE 160 140 140 ILE ILE A . n A 1 161 ALA 161 141 141 ALA ALA A . n A 1 162 PHE 162 142 142 PHE PHE A . n A 1 163 HIS 163 143 143 HIS HIS A . n A 1 164 ALA 164 144 144 ALA ALA A . n A 1 165 ARG 165 145 145 ARG ARG A . n A 1 166 LEU 166 146 146 LEU LEU A . n A 1 167 LYS 167 147 147 LYS LYS A . n A 1 168 PRO 168 148 148 PRO PRO A . n A 1 169 PRO 169 149 149 PRO PRO A . n A 1 170 GLU 170 150 150 GLU GLU A . n A 1 171 ALA 171 151 151 ALA ALA A . n A 1 172 ALA 172 152 152 ALA ALA A . n A 1 173 GLY 173 153 153 GLY GLY A . n A 1 174 TYR 174 154 154 TYR TYR A . n A 1 175 VAL 175 155 155 VAL VAL A . n A 1 176 GLU 176 156 156 GLU GLU A . n A 1 177 ALA 177 157 157 ALA ALA A . n A 1 178 VAL 178 158 158 VAL VAL A . n A 1 179 ILE 179 159 159 ILE ILE A . n A 1 180 GLU 180 160 160 GLU GLU A . n A 1 181 SER 181 161 161 SER SER A . n A 1 182 LEU 182 162 162 LEU LEU A . n A 1 183 ASP 183 163 163 ASP ASP A . n A 1 184 ALA 184 164 164 ALA ALA A . n A 1 185 ARG 185 165 165 ARG ARG A . n A 1 186 THR 186 166 166 THR THR A . n A 1 187 VAL 187 167 167 VAL VAL A . n A 1 188 ALA 188 168 168 ALA ALA A . n A 1 189 VAL 189 169 169 VAL VAL A . n A 1 190 THR 190 170 170 THR THR A . n A 1 191 PHE 191 171 171 PHE PHE A . n A 1 192 ARG 192 172 172 ARG ARG A . n A 1 193 TYR 193 173 173 TYR TYR A . n A 1 194 GLY 194 174 174 GLY GLY A . n A 1 195 GLY 195 175 175 GLY GLY A . n A 1 196 ALA 196 176 176 ALA ALA A . n A 1 197 PRO 197 177 177 PRO PRO A . n A 1 198 VAL 198 178 178 VAL VAL A . n A 1 199 GLY 199 179 179 GLY GLY A . n A 1 200 PRO 200 180 180 PRO PRO A . n A 1 201 MSE 201 181 181 MSE MSE A . n A 1 202 LEU 202 182 182 LEU LEU A . n A 1 203 ARG 203 183 183 ARG ARG A . n A 1 204 LEU 204 184 184 LEU LEU A . n A 1 205 GLY 205 185 185 GLY GLY A . n A 1 206 LYS 206 186 186 LYS LYS A . n A 1 207 PRO 207 187 187 PRO PRO A . n A 1 208 ALA 208 188 188 ALA ALA A . n A 1 209 GLU 209 189 189 GLU GLU A . n A 1 210 MSE 210 190 190 MSE MSE A . n A 1 211 VAL 211 191 191 VAL VAL A . n A 1 212 LYS 212 192 192 LYS LYS A . n A 1 213 ARG 213 193 ? ? ? A . n A 1 214 GLY 214 194 ? ? ? A . n A 1 215 ARG 215 195 ? ? ? A . n A 1 216 ARG 216 196 ? ? ? A . n A 1 217 VAL 217 197 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 201 HOH HOH A . B 2 HOH 2 202 202 HOH HOH A . B 2 HOH 3 203 203 HOH HOH A . B 2 HOH 4 204 204 HOH HOH A . B 2 HOH 5 205 205 HOH HOH A . B 2 HOH 6 206 206 HOH HOH A . B 2 HOH 7 207 207 HOH HOH A . B 2 HOH 8 208 208 HOH HOH A . B 2 HOH 9 209 209 HOH HOH A . B 2 HOH 10 210 210 HOH HOH A . B 2 HOH 11 211 211 HOH HOH A . B 2 HOH 12 212 212 HOH HOH A . B 2 HOH 13 213 213 HOH HOH A . B 2 HOH 14 214 214 HOH HOH A . B 2 HOH 15 215 215 HOH HOH A . B 2 HOH 16 216 216 HOH HOH A . B 2 HOH 17 217 217 HOH HOH A . B 2 HOH 18 218 218 HOH HOH A . B 2 HOH 19 219 219 HOH HOH A . B 2 HOH 20 220 220 HOH HOH A . B 2 HOH 21 221 221 HOH HOH A . B 2 HOH 22 222 222 HOH HOH A . B 2 HOH 23 223 223 HOH HOH A . B 2 HOH 24 224 224 HOH HOH A . B 2 HOH 25 225 225 HOH HOH A . B 2 HOH 26 226 226 HOH HOH A . B 2 HOH 27 227 227 HOH HOH A . B 2 HOH 28 228 228 HOH HOH A . B 2 HOH 29 229 229 HOH HOH A . B 2 HOH 30 230 230 HOH HOH A . B 2 HOH 31 231 231 HOH HOH A . B 2 HOH 32 232 232 HOH HOH A . B 2 HOH 33 233 233 HOH HOH A . B 2 HOH 34 234 234 HOH HOH A . B 2 HOH 35 235 235 HOH HOH A . B 2 HOH 36 236 236 HOH HOH A . B 2 HOH 37 237 237 HOH HOH A . B 2 HOH 38 238 238 HOH HOH A . B 2 HOH 39 239 239 HOH HOH A . B 2 HOH 40 240 240 HOH HOH A . B 2 HOH 41 241 241 HOH HOH A . B 2 HOH 42 242 242 HOH HOH A . B 2 HOH 43 243 243 HOH HOH A . B 2 HOH 44 244 244 HOH HOH A . B 2 HOH 45 245 245 HOH HOH A . B 2 HOH 46 246 246 HOH HOH A . B 2 HOH 47 247 247 HOH HOH A . B 2 HOH 48 248 248 HOH HOH A . B 2 HOH 49 249 249 HOH HOH A . B 2 HOH 50 250 250 HOH HOH A . B 2 HOH 51 251 251 HOH HOH A . B 2 HOH 52 252 252 HOH HOH A . B 2 HOH 53 253 253 HOH HOH A . B 2 HOH 54 254 254 HOH HOH A . B 2 HOH 55 255 255 HOH HOH A . B 2 HOH 56 256 256 HOH HOH A . B 2 HOH 57 257 257 HOH HOH A . B 2 HOH 58 258 258 HOH HOH A . B 2 HOH 59 259 259 HOH HOH A . B 2 HOH 60 260 260 HOH HOH A . B 2 HOH 61 261 261 HOH HOH A . B 2 HOH 62 262 262 HOH HOH A . B 2 HOH 63 263 263 HOH HOH A . B 2 HOH 64 264 264 HOH HOH A . B 2 HOH 65 265 265 HOH HOH A . B 2 HOH 66 266 266 HOH HOH A . B 2 HOH 67 267 267 HOH HOH A . B 2 HOH 68 268 268 HOH HOH A . B 2 HOH 69 269 269 HOH HOH A . B 2 HOH 70 270 270 HOH HOH A . B 2 HOH 71 271 271 HOH HOH A . B 2 HOH 72 272 272 HOH HOH A . B 2 HOH 73 273 273 HOH HOH A . B 2 HOH 74 274 274 HOH HOH A . B 2 HOH 75 275 275 HOH HOH A . B 2 HOH 76 276 276 HOH HOH A . B 2 HOH 77 277 277 HOH HOH A . B 2 HOH 78 278 278 HOH HOH A . B 2 HOH 79 279 279 HOH HOH A . B 2 HOH 80 280 280 HOH HOH A . B 2 HOH 81 281 281 HOH HOH A . B 2 HOH 82 282 282 HOH HOH A . B 2 HOH 83 283 283 HOH HOH A . B 2 HOH 84 284 284 HOH HOH A . B 2 HOH 85 285 285 HOH HOH A . B 2 HOH 86 286 286 HOH HOH A . B 2 HOH 87 287 287 HOH HOH A . B 2 HOH 88 288 288 HOH HOH A . B 2 HOH 89 289 289 HOH HOH A . B 2 HOH 90 290 290 HOH HOH A . B 2 HOH 91 291 291 HOH HOH A . B 2 HOH 92 292 292 HOH HOH A . B 2 HOH 93 293 293 HOH HOH A . B 2 HOH 94 294 294 HOH HOH A . B 2 HOH 95 295 295 HOH HOH A . B 2 HOH 96 296 296 HOH HOH A . B 2 HOH 97 297 297 HOH HOH A . B 2 HOH 98 298 298 HOH HOH A . B 2 HOH 99 299 299 HOH HOH A . B 2 HOH 100 300 300 HOH HOH A . B 2 HOH 101 301 301 HOH HOH A . B 2 HOH 102 302 302 HOH HOH A . B 2 HOH 103 303 303 HOH HOH A . B 2 HOH 104 304 304 HOH HOH A . B 2 HOH 105 305 305 HOH HOH A . B 2 HOH 106 306 306 HOH HOH A . B 2 HOH 107 307 307 HOH HOH A . B 2 HOH 108 308 308 HOH HOH A . B 2 HOH 109 309 309 HOH HOH A . B 2 HOH 110 310 310 HOH HOH A . B 2 HOH 111 311 311 HOH HOH A . B 2 HOH 112 312 312 HOH HOH A . B 2 HOH 113 313 313 HOH HOH A . B 2 HOH 114 314 314 HOH HOH A . B 2 HOH 115 315 315 HOH HOH A . B 2 HOH 116 316 316 HOH HOH A . B 2 HOH 117 317 317 HOH HOH A . B 2 HOH 118 318 318 HOH HOH A . B 2 HOH 119 319 319 HOH HOH A . B 2 HOH 120 320 320 HOH HOH A . B 2 HOH 121 321 321 HOH HOH A . B 2 HOH 122 322 322 HOH HOH A . B 2 HOH 123 323 323 HOH HOH A . B 2 HOH 124 324 324 HOH HOH A . B 2 HOH 125 325 325 HOH HOH A . B 2 HOH 126 326 326 HOH HOH A . B 2 HOH 127 327 327 HOH HOH A . B 2 HOH 128 328 328 HOH HOH A . B 2 HOH 129 329 329 HOH HOH A . B 2 HOH 130 330 330 HOH HOH A . B 2 HOH 131 331 331 HOH HOH A . B 2 HOH 132 332 332 HOH HOH A . B 2 HOH 133 333 333 HOH HOH A . B 2 HOH 134 334 334 HOH HOH A . B 2 HOH 135 335 335 HOH HOH A . B 2 HOH 136 336 336 HOH HOH A . B 2 HOH 137 337 337 HOH HOH A . B 2 HOH 138 338 338 HOH HOH A . B 2 HOH 139 339 339 HOH HOH A . B 2 HOH 140 340 340 HOH HOH A . B 2 HOH 141 341 341 HOH HOH A . B 2 HOH 142 342 342 HOH HOH A . B 2 HOH 143 343 343 HOH HOH A . B 2 HOH 144 344 344 HOH HOH A . B 2 HOH 145 345 345 HOH HOH A . B 2 HOH 146 346 346 HOH HOH A . B 2 HOH 147 347 347 HOH HOH A . B 2 HOH 148 348 348 HOH HOH A . B 2 HOH 149 349 349 HOH HOH A . B 2 HOH 150 350 350 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 72 A MSE 52 ? MET SELENOMETHIONINE 2 A MSE 201 A MSE 181 ? MET SELENOMETHIONINE 3 A MSE 210 A MSE 190 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 187 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -81.28 _pdbx_validate_torsion.psi -158.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -19 ? A MSE 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ALA -3 ? A ALA 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MSE 1 ? A MSE 21 22 1 Y 1 A LEU 2 ? A LEU 22 23 1 Y 1 A GLY 3 ? A GLY 23 24 1 Y 1 A GLY 4 ? A GLY 24 25 1 Y 1 A LYS 5 ? A LYS 25 26 1 Y 1 A GLY 6 ? A GLY 26 27 1 Y 1 A ARG 7 ? A ARG 27 28 1 Y 1 A PRO 8 ? A PRO 28 29 1 Y 1 A SER 9 ? A SER 29 30 1 Y 1 A GLY 10 ? A GLY 30 31 1 Y 1 A VAL 11 ? A VAL 31 32 1 Y 1 A GLY 12 ? A GLY 32 33 1 Y 1 A ARG 193 ? A ARG 213 34 1 Y 1 A GLY 194 ? A GLY 214 35 1 Y 1 A ARG 195 ? A ARG 215 36 1 Y 1 A ARG 196 ? A ARG 216 37 1 Y 1 A VAL 197 ? A VAL 217 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #