HEADER TRANSFERASE 05-JUL-05 2CY8 TITLE CRYSTAL STRUCTURE OF D-PHENYLGLYCINE AMINOTRANSFERASE (D-PHGAT) FROM TITLE 2 PSEUDOMONAS STRUTZERI ST-201 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-PHENYLGLYCINE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-PHGAT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 3 ORGANISM_TAXID: 316; SOURCE 4 STRAIN: ST-201; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMINOTRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KONGSAEREE,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-MAR-24 2CY8 1 REMARK REVDAT 3 13-JUL-11 2CY8 1 VERSN REVDAT 2 24-FEB-09 2CY8 1 VERSN REVDAT 1 26-SEP-06 2CY8 0 JRNL AUTH P.KONGSAEREE,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF D-PHENYLGLYCINE AMINOTRANSFERASE JRNL TITL 2 (D-PHGAT) FROM PSEUDOMONAS STRUTZERI ST-201 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 19737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3116 ; 0.037 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2882 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4216 ; 2.527 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6633 ; 1.143 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.403 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3543 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 686 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3372 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2024 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 80 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 1.796 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3141 ; 3.149 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1140 ; 4.350 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1075 ; 6.934 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000024761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.13700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.27400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.27400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.13700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.27400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 THR A 33 REMARK 465 ARG A 34 REMARK 465 HIS A 148 REMARK 465 TYR A 149 REMARK 465 HIS A 150 REMARK 465 GLY A 151 REMARK 465 TRP A 152 REMARK 465 HIS A 153 REMARK 465 ASP A 154 REMARK 465 PHE A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 TYR A 160 REMARK 465 ASN A 161 REMARK 465 SER A 162 REMARK 465 HIS A 163 REMARK 465 PHE A 164 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 GLN A 167 REMARK 465 PRO A 168 REMARK 465 ALA A 169 REMARK 465 PRO A 170 REMARK 465 GLY A 171 REMARK 465 VAL A 172 REMARK 465 LEU A 173 REMARK 465 PRO A 174 REMARK 465 GLU A 175 REMARK 465 ASP A 295 REMARK 465 ARG A 296 REMARK 465 LYS A 297 REMARK 465 VAL A 298 REMARK 465 LEU A 299 REMARK 465 HIS A 300 REMARK 465 GLN A 301 REMARK 465 GLY A 302 REMARK 465 THR A 303 REMARK 465 ASN A 447 REMARK 465 LEU A 448 REMARK 465 SER A 449 REMARK 465 GLY A 450 REMARK 465 ASN A 451 REMARK 465 GLN A 452 REMARK 465 SER A 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 446 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 17 CB TRP A 17 CG -0.110 REMARK 500 VAL A 70 CB VAL A 70 CG1 -0.144 REMARK 500 TYR A 92 CE2 TYR A 92 CD2 0.146 REMARK 500 ALA A 94 CA ALA A 94 CB 0.141 REMARK 500 GLU A 124 CD GLU A 124 OE1 -0.066 REMARK 500 GLU A 124 CD GLU A 124 OE2 -0.087 REMARK 500 PHE A 145 CB PHE A 145 CG -0.196 REMARK 500 GLU A 146 CB GLU A 146 CG 0.134 REMARK 500 GLU A 189 CD GLU A 189 OE2 0.090 REMARK 500 GLU A 193 CD GLU A 193 OE2 0.084 REMARK 500 GLU A 208 CD GLU A 208 OE1 0.099 REMARK 500 VAL A 210 CB VAL A 210 CG1 -0.140 REMARK 500 LYS A 269 CE LYS A 269 NZ -0.152 REMARK 500 VAL A 402 CB VAL A 402 CG1 -0.188 REMARK 500 VAL A 410 CB VAL A 410 CG2 -0.216 REMARK 500 ASN A 439 CB ASN A 439 CG -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET A 25 CG - SD - CE ANGL. DEV. = -11.0 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 127 CB - CG - CD1 ANGL. DEV. = 14.2 DEGREES REMARK 500 PHE A 145 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 ILE A 183 CG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 325 CB - CG - OD2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU A 353 CB - CG - CD2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 373 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 386 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 MET A 389 CG - SD - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 LEU A 412 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 437 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 26 -77.55 -41.60 REMARK 500 ASP A 27 130.94 165.91 REMARK 500 HIS A 39 151.91 174.87 REMARK 500 PHE A 63 -21.36 -151.19 REMARK 500 LEU A 69 67.25 -102.48 REMARK 500 ALA A 93 121.57 33.43 REMARK 500 SER A 95 123.04 -176.45 REMARK 500 SER A 121 -177.89 177.73 REMARK 500 VAL A 210 -51.41 75.44 REMARK 500 GLU A 242 30.76 -99.25 REMARK 500 PHE A 247 29.19 41.18 REMARK 500 ARG A 248 -57.16 -125.38 REMARK 500 ALA A 268 -162.92 -175.29 REMARK 500 LYS A 269 -109.72 55.24 REMARK 500 SER A 291 -0.33 69.73 REMARK 500 ARG A 292 -133.53 -124.41 REMARK 500 PHE A 358 -135.09 64.78 REMARK 500 GLN A 444 -149.44 -55.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 2CY8 A 1 453 UNP Q6VY99 Q6VY99_PSEST 1 453 SEQRES 1 A 453 MET SER ILE LEU ASN ASP TYR LYS ARG LYS THR GLU GLY SEQRES 2 A 453 SER VAL PHE TRP ALA GLN ARG ALA ARG SER VAL MET PRO SEQRES 3 A 453 ASP GLY VAL THR ALA ASP THR ARG ALA PHE ASP PRO HIS SEQRES 4 A 453 GLY LEU PHE ILE SER ASP ALA GLN GLY VAL HIS LYS THR SEQRES 5 A 453 ASP VAL ASP GLY ASN VAL TYR LEU ASP PHE PHE GLY GLY SEQRES 6 A 453 HIS GLY ALA LEU VAL LEU GLY HIS GLY HIS PRO ARG VAL SEQRES 7 A 453 ASN ALA ALA ILE ALA GLU ALA LEU SER HIS GLY VAL GLN SEQRES 8 A 453 TYR ALA ALA SER HIS PRO LEU GLU VAL ARG TRP ALA GLU SEQRES 9 A 453 ARG ILE VAL ALA ALA PHE PRO SER ILE ARG LYS LEU ARG SEQRES 10 A 453 PHE THR GLY SER GLY THR GLU THR THR LEU LEU ALA LEU SEQRES 11 A 453 ARG VAL ALA ARG ALA PHE THR GLY ARG ARG MET ILE LEU SEQRES 12 A 453 ARG PHE GLU GLY HIS TYR HIS GLY TRP HIS ASP PHE SER SEQRES 13 A 453 ALA SER GLY TYR ASN SER HIS PHE ASP GLY GLN PRO ALA SEQRES 14 A 453 PRO GLY VAL LEU PRO GLU THR THR ALA ASN THR LEU LEU SEQRES 15 A 453 ILE ARG PRO ASP ASP ILE GLU GLY MET ARG GLU VAL PHE SEQRES 16 A 453 ALA ASN HIS GLY SER ASP ILE ALA ALA PHE ILE ALA GLU SEQRES 17 A 453 PRO VAL GLY SER HIS PHE GLY VAL THR PRO VAL SER ASP SEQRES 18 A 453 SER PHE LEU ARG GLU GLY ALA GLU LEU ALA ARG GLN TYR SEQRES 19 A 453 GLY ALA LEU PHE ILE LEU ASP GLU VAL ILE SER GLY PHE SEQRES 20 A 453 ARG VAL GLY ASN HIS GLY MET GLN ALA LEU LEU ASP VAL SEQRES 21 A 453 GLN PRO ASP LEU THR CYS LEU ALA LYS ALA SER ALA GLY SEQRES 22 A 453 GLY LEU PRO GLY GLY ILE LEU GLY GLY ARG GLU ASP VAL SEQRES 23 A 453 MET GLY VAL LEU SER ARG GLY SER ASP ARG LYS VAL LEU SEQRES 24 A 453 HIS GLN GLY THR PHE THR GLY ASN PRO ILE THR ALA ALA SEQRES 25 A 453 ALA ALA ILE ALA ALA ILE ASP THR ILE LEU GLU ASP ASP SEQRES 26 A 453 VAL CYS ALA LYS ILE ASN ASP LEU GLY GLN PHE ALA ARG SEQRES 27 A 453 GLU ALA MET ASN HIS LEU PHE ALA ARG LYS GLY LEU ASN SEQRES 28 A 453 TRP LEU ALA TYR GLY ARG PHE SER GLY PHE HIS LEU MET SEQRES 29 A 453 PRO GLY LEU PRO PRO ASN THR THR ASP THR GLY SER ILE SEQRES 30 A 453 THR ARG ALA GLU VAL ALA ARG PRO ASP VAL LYS MET ILE SEQRES 31 A 453 ALA ALA MET ARG MET ALA LEU ILE LEU GLU GLY VAL ASP SEQRES 32 A 453 ILE GLY GLY ARG GLY SER VAL PHE LEU SER ALA GLN HIS SEQRES 33 A 453 GLU ARG GLU HIS VAL GLU HIS LEU VAL THR THR PHE ASP SEQRES 34 A 453 ARG VAL LEU ASP ARG LEU ALA ASP GLU ASN LEU LEU SER SEQRES 35 A 453 TRP GLN GLY THR ASN LEU SER GLY ASN GLN SER FORMUL 2 HOH *130(H2 O) HELIX 1 1 SER A 2 THR A 11 1 10 HELIX 2 2 THR A 11 MET A 25 1 15 HELIX 3 3 HIS A 75 SER A 87 1 13 HELIX 4 4 HIS A 96 PHE A 110 1 15 HELIX 5 5 SER A 121 GLY A 138 1 18 HELIX 6 6 THR A 176 ALA A 178 5 3 HELIX 7 7 ASP A 187 GLY A 199 1 13 HELIX 8 8 SER A 212 VAL A 216 1 5 HELIX 9 9 SER A 220 TYR A 234 1 15 HELIX 10 10 HIS A 252 ASP A 259 1 8 HELIX 11 11 ALA A 270 GLY A 273 5 4 HELIX 12 12 ARG A 283 GLY A 288 1 6 HELIX 13 13 ASN A 307 ASP A 324 1 18 HELIX 14 14 ASP A 325 LYS A 348 1 24 HELIX 15 15 THR A 374 ARG A 379 1 6 HELIX 16 16 ASP A 386 GLU A 400 1 15 HELIX 17 17 GLU A 417 GLU A 438 1 22 SHEET 1 A 4 ILE A 43 GLN A 47 0 SHEET 2 A 4 HIS A 50 ASP A 53 -1 O THR A 52 N ASP A 45 SHEET 3 A 4 VAL A 58 ASP A 61 -1 O TYR A 59 N LYS A 51 SHEET 4 A 4 VAL A 402 ASP A 403 1 O ASP A 403 N LEU A 60 SHEET 1 B 7 LYS A 115 THR A 119 0 SHEET 2 B 7 GLY A 278 GLY A 282 -1 O GLY A 278 N THR A 119 SHEET 3 B 7 LEU A 264 ALA A 268 -1 N LEU A 267 O ILE A 279 SHEET 4 B 7 LEU A 237 ASP A 241 1 N LEU A 240 O LEU A 264 SHEET 5 B 7 ILE A 202 ALA A 207 1 N ALA A 203 O LEU A 237 SHEET 6 B 7 MET A 141 PHE A 145 1 N LEU A 143 O ALA A 204 SHEET 7 B 7 THR A 180 ILE A 183 1 O LEU A 181 N ARG A 144 SHEET 1 C 3 TRP A 352 TYR A 355 0 SHEET 2 C 3 GLY A 360 PRO A 365 -1 O MET A 364 N LEU A 353 SHEET 3 C 3 SER A 409 PHE A 411 -1 O VAL A 410 N PHE A 361 CRYST1 74.684 74.684 147.411 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013390 0.007731 0.000000 0.00000 SCALE2 0.000000 0.015461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006784 0.00000