HEADER SIGNALING PROTEIN 14-JUL-05 2CZO TITLE SOLUTION STRUCTURE OF THE PX DOMAIN OF BEM1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUD EMERGENCE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PX DOMAIN; COMPND 5 SYNONYM: BEM1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: BEM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS PX DOMAIN, BEM1P, PHOSPHOINOSITIDE BINDING, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.MAEDA,K.OGURA,M.HORIUCHI,H.KUMETA,Y.FUJIOKA,F.INAGAKI REVDAT 3 09-MAR-22 2CZO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CZO 1 VERSN REVDAT 1 03-OCT-06 2CZO 0 JRNL AUTH A.MAEDA,K.OGURA,M.HORIUCHI,H.KUMETA,Y.FUJIOKA,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF THE PX DOMAIN OF BEM1P JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0 REMARK 3 AUTHORS : WELCH (VNMR), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CZO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000024805. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 200MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM BEM1P PX DOMAIN U-15N, REMARK 210 13C; 20MM MES BUFFER; 200MM NACL; REMARK 210 0.4MM BEM1P PX DOMAIN U-15N; REMARK 210 20MM MES BUFFER; 200MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 23, SPARKY 3.11, PACES REMARK 210 1.0, CYANA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 264 REMARK 465 PRO A 265 REMARK 465 LEU A 266 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 PRO A 270 REMARK 465 GLN A 271 REMARK 465 ASN A 272 REMARK 465 GLY A 403 REMARK 465 PHE A 404 REMARK 465 ASP A 405 REMARK 465 ARG A 406 REMARK 465 GLU A 407 REMARK 465 PHE A 408 REMARK 465 GLU A 409 REMARK 465 ARG A 410 REMARK 465 ASP A 411 REMARK 465 GLU A 412 REMARK 465 ASN A 413 REMARK 465 GLN A 414 REMARK 465 ASN A 415 REMARK 465 ASN A 416 REMARK 465 ILE A 417 REMARK 465 LYS A 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 289 -79.06 -69.93 REMARK 500 1 ASP A 295 47.72 37.19 REMARK 500 1 GLU A 296 -40.33 82.75 REMARK 500 1 LYS A 338 -50.34 -125.55 REMARK 500 1 ASP A 341 176.45 -50.38 REMARK 500 1 PRO A 355 2.49 -69.73 REMARK 500 1 PHE A 397 53.69 -95.55 REMARK 500 1 ASN A 401 43.26 35.04 REMARK 500 2 SER A 274 -150.62 -163.05 REMARK 500 2 GLU A 289 -77.88 -68.46 REMARK 500 2 GLU A 296 -38.43 82.87 REMARK 500 2 LYS A 338 -46.31 -135.29 REMARK 500 2 ASP A 341 32.12 174.28 REMARK 500 2 TRP A 346 142.63 62.22 REMARK 500 2 PRO A 352 90.01 -69.74 REMARK 500 2 ILE A 354 74.11 -159.09 REMARK 500 2 PHE A 397 55.18 -94.43 REMARK 500 3 GLU A 289 -79.65 -61.54 REMARK 500 3 SER A 290 -168.99 -165.96 REMARK 500 3 GLU A 296 -40.74 81.94 REMARK 500 3 TRP A 346 84.22 45.67 REMARK 500 3 PRO A 352 94.46 -69.75 REMARK 500 3 VAL A 358 135.15 62.23 REMARK 500 3 ASP A 385 -162.85 -100.66 REMARK 500 3 PHE A 397 47.11 -97.37 REMARK 500 4 SER A 274 -166.50 61.43 REMARK 500 4 ASP A 279 53.45 -109.89 REMARK 500 4 GLU A 289 -70.98 -68.63 REMARK 500 4 SER A 290 -156.80 174.23 REMARK 500 4 LYS A 338 -35.34 -133.99 REMARK 500 4 ASP A 341 104.19 72.62 REMARK 500 4 ILE A 354 65.21 -179.23 REMARK 500 4 PHE A 397 54.83 -93.22 REMARK 500 4 ASN A 401 60.30 38.18 REMARK 500 5 SER A 290 -150.38 -178.48 REMARK 500 5 ASP A 295 -42.60 81.08 REMARK 500 5 GLU A 296 -51.33 172.06 REMARK 500 5 LYS A 338 -47.10 -134.18 REMARK 500 5 TRP A 346 105.54 -50.77 REMARK 500 5 SER A 347 112.68 -160.04 REMARK 500 5 ILE A 354 74.12 -113.92 REMARK 500 5 PRO A 355 4.46 -69.78 REMARK 500 5 VAL A 358 122.58 -170.46 REMARK 500 5 PHE A 397 38.38 -97.39 REMARK 500 5 ASN A 401 -63.34 73.82 REMARK 500 6 SER A 274 -173.95 -175.79 REMARK 500 6 GLU A 289 -92.44 -67.19 REMARK 500 6 ASP A 295 -49.77 77.57 REMARK 500 6 GLU A 296 -46.79 -178.48 REMARK 500 6 LYS A 338 -33.13 -130.42 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2CZO A 269 418 UNP P29366 BEM1_YEAST 269 418 SEQADV 2CZO GLY A 264 UNP P29366 CLONING ARTIFACT SEQADV 2CZO PRO A 265 UNP P29366 CLONING ARTIFACT SEQADV 2CZO LEU A 266 UNP P29366 CLONING ARTIFACT SEQADV 2CZO GLY A 267 UNP P29366 CLONING ARTIFACT SEQADV 2CZO SER A 268 UNP P29366 CLONING ARTIFACT SEQRES 1 A 155 GLY PRO LEU GLY SER LYS PRO GLN ASN LYS SER ALA LYS SEQRES 2 A 155 LEU VAL ASP GLY GLU LEU LEU VAL LYS ALA SER VAL GLU SEQRES 3 A 155 SER PHE GLY LEU GLU ASP GLU LYS TYR TRP PHE LEU VAL SEQRES 4 A 155 CYS CYS GLU LEU SER ASN GLY LYS THR ARG GLN LEU LYS SEQRES 5 A 155 ARG TYR TYR GLN ASP PHE TYR ASP LEU GLN VAL GLN LEU SEQRES 6 A 155 LEU ASP ALA PHE PRO ALA GLU ALA GLY LYS LEU ARG ASP SEQRES 7 A 155 ALA GLY GLY GLN TRP SER LYS ARG ILE MET PRO TYR ILE SEQRES 8 A 155 PRO GLY PRO VAL PRO TYR VAL THR ASN SER ILE THR LYS SEQRES 9 A 155 LYS ARG LYS GLU ASP LEU ASN ILE TYR VAL ALA ASP LEU SEQRES 10 A 155 VAL ASN LEU PRO ASP TYR ILE SER ARG SER GLU MET VAL SEQRES 11 A 155 HIS SER LEU PHE VAL VAL LEU ASN ASN GLY PHE ASP ARG SEQRES 12 A 155 GLU PHE GLU ARG ASP GLU ASN GLN ASN ASN ILE LYS HELIX 1 1 TYR A 317 PHE A 332 1 16 HELIX 2 2 THR A 362 ASN A 382 1 21 HELIX 3 3 ASP A 385 ARG A 389 5 5 HELIX 4 4 SER A 390 SER A 395 1 6 SHEET 1 A 3 LEU A 283 GLU A 294 0 SHEET 2 A 3 LYS A 297 LEU A 306 -1 O LYS A 297 N GLU A 294 SHEET 3 A 3 THR A 311 ARG A 316 -1 O LEU A 314 N VAL A 302 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1