HEADER SIGNALING PROTEIN 04-AUG-05 2D0N TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL SH3 DOMAIN OF THE ADAPTOR PROTEIN TITLE 2 GADS IN COMPLEX WITH SLP-76 MOTIF PEPTIDE REVEALS A UNIQUE SH3-SH3 TITLE 3 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRB2-RELATED ADAPTOR PROTEIN 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL SH3 DOMAIN; COMPND 5 SYNONYM: GADS PROTEIN, GROWTH FACTOR RECEPTOR BINDING PROTEIN, GRBLG, COMPND 6 GRB-2-LIKE PROTEIN, GRB2L, HEMATOPOIETIC CELL-ASSOCIATED ADAPTOR COMPND 7 PROTEIN GRPL, GRB-2-RELATED MONOCYTIC ADAPTER PROTEIN, MONOCYTIC COMPND 8 ADAPTER, MONA, ADAPTER PROTEIN GRID; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SLP-76 BINDING PEPTIDE; COMPND 12 CHAIN: B, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-GADS-CSH3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE SLP-76 PEPTIDE WAS SYNTHESIZED SYNTHETICALLY WITH SOURCE 13 THE F-MOC CHEMISTRY KEYWDS SH3 DOMAIN-COMPLEX, MONA/GADS SH3C DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.DIMASI REVDAT 4 25-OCT-23 2D0N 1 SEQADV REVDAT 3 24-FEB-09 2D0N 1 VERSN REVDAT 2 14-NOV-06 2D0N 1 JRNL TITLE REVDAT 1 23-AUG-05 2D0N 0 JRNL AUTH N.DIMASI JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL SH3 DOMAIN OF THE JRNL TITL 2 ADAPTOR PROTEIN GADS IN COMPLEX WITH SLP-76 MOTIF PEPTIDE JRNL TITL 3 REVEALS A UNIQUE SH3-SH3 INTERACTION JRNL REF INT.J.BIOCHEM.CELL BIOL. V. 39 109 2007 JRNL REFN ISSN 1357-2725 JRNL PMID 17010654 JRNL DOI 10.1016/J.BIOCEL.2006.07.003 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000024840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 36.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.17800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OEB CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M AMMONIUM SULFATE, 0.1M REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.31100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.31100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.04900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.31100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.31100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.04900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.31100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.31100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.04900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.31100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.31100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.04900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 5 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 138 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 189 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 128 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 264 REMARK 465 SER C 265 REMARK 465 ARG C 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 MET C 321 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 109 O HOH B 175 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 79 O HOH D 79 2445 1.89 REMARK 500 OE1 GLU A 278 ND2 ASN C 307 2545 2.01 REMARK 500 O GLY A 264 CE MET C 320 5454 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 288 CG GLU C 288 CD 0.093 REMARK 500 ALA C 318 CA ALA C 318 CB 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 320 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG C 269 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 269 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 PRO C 319 C - N - CA ANGL. DEV. = 31.8 DEGREES REMARK 500 PRO C 319 C - N - CD ANGL. DEV. = -30.1 DEGREES REMARK 500 MET C 320 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 318 -115.78 -42.30 REMARK 500 SER D 234 -15.61 98.71 REMARK 500 ILE D 235 108.48 26.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET C 320 MET C 321 -133.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A LONGER PEPTIDE DETERMINED BY X- REMARK 900 RAY CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1H3H RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A LONGER PEPTIDE DETERMINED BY NMR REMARK 900 SPECTROSCOPY REMARK 900 RELATED ID: 1UTI RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A HEMATOPOIETIC PROGENITOR KINASE 1 REMARK 900 PEPTIDE DETERMINED BY X-RAY CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1UJ0 RELATED DB: PDB REMARK 900 A SIMILAR PROTEIN/PEPTIDE COMPLEX DETERMINED BY X-RAY REMARK 900 CRYSTALLOGRAPHY DBREF 2D0N A 267 322 UNP O89100 GRAP2_MOUSE 267 322 DBREF 2D0N C 267 322 UNP O89100 GRAP2_MOUSE 267 322 DBREF 2D0N B 233 241 PDB 2D0N 2D0N 233 241 DBREF 2D0N D 233 241 PDB 2D0N 2D0N 233 241 SEQADV 2D0N GLY A 264 UNP O89100 CLONING ARTIFACT SEQADV 2D0N SER A 265 UNP O89100 CLONING ARTIFACT SEQADV 2D0N PRO A 266 UNP O89100 CLONING ARTIFACT SEQADV 2D0N GLY C 264 UNP O89100 CLONING ARTIFACT SEQADV 2D0N SER C 265 UNP O89100 CLONING ARTIFACT SEQADV 2D0N PRO C 266 UNP O89100 CLONING ARTIFACT SEQRES 1 A 59 GLY SER PRO TRP ALA ARG ALA LEU TYR ASP PHE GLU ALA SEQRES 2 A 59 LEU GLU GLU ASP GLU LEU GLY PHE ARG SER GLY GLU VAL SEQRES 3 A 59 VAL GLU VAL LEU ASP SER SER ASN PRO SER TRP TRP THR SEQRES 4 A 59 GLY ARG LEU HIS ASN LYS LEU GLY LEU PHE PRO ALA ASN SEQRES 5 A 59 TYR VAL ALA PRO MET MET ARG SEQRES 1 B 9 PRO SER ILE ASP ARG SER THR LYS PRO SEQRES 1 C 59 GLY SER PRO TRP ALA ARG ALA LEU TYR ASP PHE GLU ALA SEQRES 2 C 59 LEU GLU GLU ASP GLU LEU GLY PHE ARG SER GLY GLU VAL SEQRES 3 C 59 VAL GLU VAL LEU ASP SER SER ASN PRO SER TRP TRP THR SEQRES 4 C 59 GLY ARG LEU HIS ASN LYS LEU GLY LEU PHE PRO ALA ASN SEQRES 5 C 59 TYR VAL ALA PRO MET MET ARG SEQRES 1 D 9 PRO SER ILE ASP ARG SER THR LYS PRO FORMUL 5 HOH *199(H2 O) HELIX 1 1 ASP B 236 LYS B 240 5 5 HELIX 2 2 ASN C 315 VAL C 317 5 3 HELIX 3 3 ASP D 236 LYS D 240 5 5 SHEET 1 A 5 LYS A 308 PRO A 313 0 SHEET 2 A 5 TRP A 300 LEU A 305 -1 N GLY A 303 O GLY A 310 SHEET 3 A 5 VAL A 289 ASP A 294 -1 N GLU A 291 O ARG A 304 SHEET 4 A 5 TRP A 267 ALA A 270 -1 N ALA A 268 O VAL A 290 SHEET 5 A 5 VAL A 317 PRO A 319 -1 O ALA A 318 N ARG A 269 SHEET 1 B 4 TRP C 267 ARG C 269 0 SHEET 2 B 4 VAL C 289 ASP C 294 -1 O VAL C 290 N ALA C 268 SHEET 3 B 4 TRP C 300 LEU C 305 -1 O THR C 302 N LEU C 293 SHEET 4 B 4 LYS C 308 PRO C 313 -1 O GLY C 310 N GLY C 303 CISPEP 1 ALA C 318 PRO C 319 0 -8.32 CRYST1 58.622 58.622 74.098 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017059 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013496 0.00000