HEADER LYASE 05-AUG-05 2D0Q TITLE COMPLEX OF FE-TYPE NHASE WITH CYCLOHEXYL ISOCYANIDE, PHOTO- TITLE 2 ACTIVATED FOR 1HR AT 277K COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRILE HYDRATASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITRILASE, NHASE; COMPND 5 EC: 4.2.1.84; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NITRILE HYDRATASE SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NITRILASE, NHASE; COMPND 10 EC: 4.2.1.84 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 3 ORGANISM_TAXID: 1833; SOURCE 4 STRAIN: N771; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 7 ORGANISM_TAXID: 1833; SOURCE 8 STRAIN: N771 KEYWDS CYSTEINE-SULFINIC ACID, CYSTEINE-SULFENIC ACID, PHOTO- KEYWDS 2 REACTIVE, NITRILE, HYDRATION, SUBSTRATE ANALOGUE, COMPLEX, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NOJIRI,Y.KAWANO,K.HASHIMOTO,N.KAMIYA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2D0Q 1 VERSN REVDAT 1 05-FEB-06 2D0Q 0 JRNL AUTH M.NOJIRI,Y.KAWANO,K.HASHIMOTO,N.KAMIYA JRNL TITL X-RAY SNAP SHOTS OF INHIBITOR BINDING PROCESS IN JRNL TITL 2 PHOTO-REACTIVE NITRILE HYDRATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 48097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3329 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4532 ; 1.131 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;34.734 ;22.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;11.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.457 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2552 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1763 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2298 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 404 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.089 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 4 ; 0.086 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2081 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3305 ; 1.133 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 1.666 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 2.701 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D0Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB024843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MAGNESIUM CHLORIDE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.17600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.10050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.17600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.10050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1832 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 ASP A 5 REMARK 465 HIS A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE A 300 C CYI A 1301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 164 -131.64 -134.35 REMARK 500 ARG B 141 41.46 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1784 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A1811 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A1817 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1819 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1820 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH B1898 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1928 DISTANCE = 5.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 109 SG REMARK 620 2 CSD A 112 SG 91.8 REMARK 620 3 SER A 113 N 89.7 96.9 REMARK 620 4 CYS A 114 N 90.6 176.7 80.9 REMARK 620 5 CYS A 114 SG 93.4 94.2 168.4 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1410 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1613 O REMARK 620 2 HOH A1771 O 85.0 REMARK 620 3 HOH A1799 O 77.7 88.7 REMARK 620 4 HOH B1811 O 174.8 97.9 98.0 REMARK 620 5 HOH B1780 O 95.0 175.3 96.0 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1439 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1616 O REMARK 620 2 HOH B1790 O 86.9 REMARK 620 3 HOH B1904 O 91.2 177.8 REMARK 620 4 HOH B1924 O 178.6 91.7 90.2 REMARK 620 5 HOH B1925 O 82.6 91.0 87.6 97.2 REMARK 620 6 HOH B1927 O 87.3 90.4 90.6 92.9 169.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1517 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1754 O REMARK 620 2 HOH B1769 O 88.2 REMARK 620 3 HOH B1750 O 88.0 98.5 REMARK 620 4 HOH B1866 O 178.1 93.7 92.1 REMARK 620 5 GLU A 139 OE2 78.8 89.3 164.5 100.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1560 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1747 O REMARK 620 2 HOH A1665 O 91.0 REMARK 620 3 HOH A1735 O 87.5 86.5 REMARK 620 4 HOH A1725 O 94.2 92.0 177.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1438 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1673 O REMARK 620 2 HOH B1741 O 86.3 REMARK 620 3 HOH A1585 O 96.6 175.3 REMARK 620 4 HOH A1656 O 92.8 86.1 90.0 REMARK 620 5 HOH A1694 O 173.9 87.9 89.3 88.7 REMARK 620 6 HOH A1664 O 91.0 89.2 94.4 173.8 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1612 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1802 O REMARK 620 2 HOH B1827 O 167.1 REMARK 620 3 HOH B1716 O 109.0 82.9 REMARK 620 4 HOH B1755 O 87.1 97.4 93.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1410 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1438 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1439 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1612 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1517 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1560 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYI A 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000506.3 RELATED DB: TARGETDB DBREF 2D0Q A 1 206 UNP P13448 NHAA_RHOER 1 206 DBREF 2D0Q B 1 212 UNP P13449 NHAB_RHOER 1 212 SEQADV 2D0Q CSD A 112 UNP P13448 CYS 112 MODIFIED RESIDUE SEQRES 1 A 206 SER VAL THR ILE ASP HIS THR THR GLU ASN ALA ALA PRO SEQRES 2 A 206 ALA GLN ALA PRO VAL SER ASP ARG ALA TRP ALA LEU PHE SEQRES 3 A 206 ARG ALA LEU ASP GLY LYS GLY LEU VAL PRO ASP GLY TYR SEQRES 4 A 206 VAL GLU GLY TRP LYS LYS THR PHE GLU GLU ASP PHE SER SEQRES 5 A 206 PRO ARG ARG GLY ALA GLU LEU VAL ALA ARG ALA TRP THR SEQRES 6 A 206 ASP PRO GLU PHE ARG GLN LEU LEU LEU THR ASP GLY THR SEQRES 7 A 206 ALA ALA VAL ALA GLN TYR GLY TYR LEU GLY PRO GLN GLY SEQRES 8 A 206 GLU TYR ILE VAL ALA VAL GLU ASP THR PRO THR LEU LYS SEQRES 9 A 206 ASN VAL ILE VAL CYS SER LEU CSD SER CYS THR ALA TRP SEQRES 10 A 206 PRO ILE LEU GLY LEU PRO PRO THR TRP TYR LYS SER PHE SEQRES 11 A 206 GLU TYR ARG ALA ARG VAL VAL ARG GLU PRO ARG LYS VAL SEQRES 12 A 206 LEU SER GLU MET GLY THR GLU ILE ALA SER ASP ILE GLU SEQRES 13 A 206 ILE ARG VAL TYR ASP THR THR ALA GLU THR ARG TYR MET SEQRES 14 A 206 VAL LEU PRO GLN ARG PRO ALA GLY THR GLU GLY TRP SER SEQRES 15 A 206 GLN GLU GLN LEU GLN GLU ILE VAL THR LYS ASP CYS LEU SEQRES 16 A 206 ILE GLY VAL ALA ILE PRO GLN VAL PRO THR VAL SEQRES 1 B 212 MET ASP GLY VAL HIS ASP LEU ALA GLY VAL GLN GLY PHE SEQRES 2 B 212 GLY LYS VAL PRO HIS THR VAL ASN ALA ASP ILE GLY PRO SEQRES 3 B 212 THR PHE HIS ALA GLU TRP GLU HIS LEU PRO TYR SER LEU SEQRES 4 B 212 MET PHE ALA GLY VAL ALA GLU LEU GLY ALA PHE SER VAL SEQRES 5 B 212 ASP GLU VAL ARG TYR VAL VAL GLU ARG MET GLU PRO ARG SEQRES 6 B 212 HIS TYR MET MET THR PRO TYR TYR GLU ARG TYR VAL ILE SEQRES 7 B 212 GLY VAL ALA THR LEU MET VAL GLU LYS GLY ILE LEU THR SEQRES 8 B 212 GLN ASP GLU LEU GLU SER LEU ALA GLY GLY PRO PHE PRO SEQRES 9 B 212 LEU SER ARG PRO SER GLU SER GLU GLY ARG PRO ALA PRO SEQRES 10 B 212 VAL GLU THR THR THR PHE GLU VAL GLY GLN ARG VAL ARG SEQRES 11 B 212 VAL ARG ASP GLU TYR VAL PRO GLY HIS ILE ARG MET PRO SEQRES 12 B 212 ALA TYR CYS ARG GLY ARG VAL GLY THR ILE SER HIS ARG SEQRES 13 B 212 THR THR GLU LYS TRP PRO PHE PRO ASP ALA ILE GLY HIS SEQRES 14 B 212 GLY ARG ASN ASP ALA GLY GLU GLU PRO THR TYR HIS VAL SEQRES 15 B 212 LYS PHE ALA ALA GLU GLU LEU PHE GLY SER ASP THR ASP SEQRES 16 B 212 GLY GLY SER VAL VAL VAL ASP LEU PHE GLU GLY TYR LEU SEQRES 17 B 212 GLU PRO ALA ALA MODRES 2D0Q CSD A 112 CYS 3-SULFINOALANINE HET CSD A 112 8 HET FE A 300 1 HET MG A1410 1 HET MG B1438 1 HET MG A1439 1 HET MG B1612 1 HET MG A1517 1 HET MG A1560 1 HET CYI A1301 8 HETNAM CSD 3-SULFINOALANINE HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM CYI CYCLOHEXYL ISOCYANIDE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 3 FE FE 3+ FORMUL 4 MG 6(MG 2+) FORMUL 10 CYI C7 H11 N FORMUL 11 HOH *582(H2 O) HELIX 1 1 PRO A 17 GLY A 31 1 15 HELIX 2 2 GLY A 38 ASP A 50 1 13 HELIX 3 3 SER A 52 ASP A 66 1 15 HELIX 4 4 ASP A 66 ASP A 76 1 11 HELIX 5 5 ASP A 76 TYR A 84 1 9 HELIX 6 6 ALA A 116 GLY A 121 1 6 HELIX 7 7 PRO A 124 SER A 129 1 6 HELIX 8 8 SER A 129 VAL A 136 1 8 HELIX 9 9 GLU A 139 GLY A 148 1 10 HELIX 10 10 SER A 182 VAL A 190 1 9 HELIX 11 11 THR A 191 GLY A 197 1 7 HELIX 12 12 HIS B 34 GLU B 46 1 13 HELIX 13 13 SER B 51 ARG B 61 1 11 HELIX 14 14 GLU B 63 THR B 70 1 8 HELIX 15 15 PRO B 71 LYS B 87 1 17 HELIX 16 16 THR B 91 GLY B 100 1 10 HELIX 17 17 PRO B 143 ARG B 147 5 5 HELIX 18 18 PHE B 163 GLY B 168 1 6 HELIX 19 19 ALA B 186 GLY B 191 1 6 SHEET 1 A 2 ILE A 94 GLU A 98 0 SHEET 2 A 2 ARG A 167 LEU A 171 1 O LEU A 171 N VAL A 97 SHEET 1 B 7 LEU A 103 VAL A 108 0 SHEET 2 B 7 GLU A 156 ASP A 161 1 O GLU A 156 N LYS A 104 SHEET 3 B 7 SER B 198 PHE B 204 1 O VAL B 200 N VAL A 159 SHEET 4 B 7 THR B 179 ALA B 185 -1 N PHE B 184 O VAL B 199 SHEET 5 B 7 VAL B 150 ARG B 156 -1 N SER B 154 O HIS B 181 SHEET 6 B 7 ARG B 128 VAL B 131 -1 N VAL B 129 O GLY B 151 SHEET 7 B 7 LEU B 208 PRO B 210 -1 O GLU B 209 N ARG B 130 LINK FE FE A 300 SG CYS A 109 1555 1555 2.35 LINK FE FE A 300 SG CSD A 112 1555 1555 2.15 LINK FE FE A 300 N SER A 113 1555 1555 2.10 LINK FE FE A 300 N CYS A 114 1555 1555 2.02 LINK FE FE A 300 SG CYS A 114 1555 1555 2.28 LINK C LEU A 111 N CSD A 112 1555 1555 1.34 LINK C CSD A 112 N SER A 113 1555 1555 1.33 LINK MG MG A1410 O HOH A1613 1555 1555 2.14 LINK MG MG A1410 O HOH A1771 1555 1555 2.03 LINK MG MG A1410 O HOH A1799 1555 1555 2.17 LINK MG MG A1410 O HOH B1811 1555 1555 2.19 LINK MG MG A1410 O HOH B1780 1555 1555 2.36 LINK MG MG A1439 O HOH A1616 1555 1555 2.20 LINK MG MG A1517 O HOH A1754 1555 1555 1.99 LINK MG MG A1517 O HOH B1769 1555 1555 3.08 LINK MG MG A1517 O HOH B1750 1555 1555 1.92 LINK MG MG A1517 O HOH B1866 1555 1555 1.80 LINK MG MG A1517 OE2 GLU A 139 1555 1555 2.57 LINK MG MG A1560 O HOH A1747 1555 1555 1.92 LINK MG MG A1560 O HOH A1665 1555 1555 1.92 LINK MG MG A1560 O HOH A1735 1555 1555 2.15 LINK MG MG A1560 O HOH A1725 1555 1555 1.97 LINK MG MG B1438 O HOH B1673 1555 1555 2.07 LINK MG MG B1438 O HOH B1741 1555 1555 1.99 LINK MG MG B1612 O HOH B1802 1555 1555 2.17 LINK MG MG B1612 O HOH B1827 1555 1555 1.93 LINK MG MG B1612 O HOH B1716 1555 1555 2.12 LINK MG MG B1612 O HOH B1755 1555 1555 1.90 LINK MG MG A1439 O HOH B1790 1555 3455 2.04 LINK MG MG A1439 O HOH B1904 1555 3455 2.03 LINK MG MG A1439 O HOH B1924 1555 3455 1.83 LINK MG MG A1439 O HOH B1925 1555 3445 1.94 LINK MG MG A1439 O HOH B1927 1555 3455 2.01 LINK MG MG B1438 O HOH A1585 1555 3545 2.16 LINK MG MG B1438 O HOH A1656 1555 3545 2.05 LINK MG MG B1438 O HOH A1694 1555 3545 2.17 LINK MG MG B1438 O HOH A1664 1555 3545 1.97 SITE 1 AC1 5 CYS A 109 CSD A 112 SER A 113 CYS A 114 SITE 2 AC1 5 CYI A1301 SITE 1 AC2 5 HOH A1613 HOH A1771 HOH A1799 HOH B1780 SITE 2 AC2 5 HOH B1811 SITE 1 AC3 6 HOH A1585 HOH A1656 HOH A1664 HOH A1694 SITE 2 AC3 6 HOH B1673 HOH B1741 SITE 1 AC4 6 HOH A1616 HOH B1790 HOH B1904 HOH B1924 SITE 2 AC4 6 HOH B1925 HOH B1927 SITE 1 AC5 4 HOH B1716 HOH B1755 HOH B1802 HOH B1827 SITE 1 AC6 5 GLU A 139 HOH A1754 HOH B1750 HOH B1769 SITE 2 AC6 5 HOH B1866 SITE 1 AC7 5 ASP A 37 HOH A1665 HOH A1725 HOH A1735 SITE 2 AC7 5 HOH A1747 SITE 1 AC8 10 GLN A 90 CSD A 112 SER A 113 CYS A 114 SITE 2 AC8 10 TRP A 117 FE A 300 VAL B 52 ARG B 56 SITE 3 AC8 10 TYR B 72 TYR B 76 CRYST1 114.352 60.201 81.585 90.00 125.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008745 0.000000 0.006147 0.00000 SCALE2 0.000000 0.016611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014982 0.00000