data_2D18 # _entry.id 2D18 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D18 pdb_00002d18 10.2210/pdb2d18/pdb RCSB RCSB024861 ? ? WWPDB D_1000024861 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D17 'Solution structure of stem-bulge-stem region of DIS' unspecified PDB 2D19 'Solution structure of loop region of the kissing-loop dimer' unspecified PDB 2D1A 'Solution structure model of the extended-duplex dimer' unspecified PDB 2D1B 'Solution structure models of the kissing-loop dimer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D18 _pdbx_database_status.recvd_initial_deposition_date 2005-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Takahashi, K.' 2 'Noguchi, S.' 3 'Takaku, H.' 4 'Koyanagi, Y.' 5 'Yamamoto, N.' 6 'Kawai, G.' 7 # _citation.id primary _citation.title 'Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 138 _citation.page_first 583 _citation.page_last 592 _citation.year 2005 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16272570 _citation.pdbx_database_id_DOI 10.1093/jb/mvi158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Takahashi, K.' 2 ? primary 'Noguchi, S.' 3 ? primary 'Takaku, H.' 4 ? primary 'Koyanagi, Y.' 5 ? primary 'Yamamoto, N.' 6 ? primary 'Kawai, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'" _entity.formula_weight 5481.341 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUGAAGUGCACACGGC _entity_poly.pdbx_seq_one_letter_code_can GCUGAAGUGCACACGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 U n 1 9 G n 1 10 C n 1 11 A n 1 12 C n 1 13 A n 1 14 C n 1 15 G n 1 16 G n 1 17 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2D18 _struct_ref.pdbx_db_accession 2D18 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D18 A 1 ? 17 ? 2D18 1 ? 17 ? 1 17 2 1 2D18 B 1 ? 17 ? 2D18 1 ? 17 ? 1 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 2 2 1 '1D-HSQC-selected spectrum' 4 3 1 '1D-HSQC-filtered spectrum' 4 4 1 '2D NOESY' 7 5 2 '2D TOCSY' 1 6 2 '2D NOESY' 1 7 2 '2D-w2-filtered NOESY' 3 8 2 '2D-w2-filtered NOESY' 5 9 2 '2D TOCSY' 6 10 2 '2D NOESY' 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 7.0 '50mM NaCl' . K 2 298 ambient 7.0 '50mM NaCl' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 2 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 4 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.2mM [A-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 6 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 7 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _pdbx_nmr_refine.entry_id 2D18 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 598 restraints, 384 are NOE-derived distance constraints, 138 dihedral angle restraints, 76 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2D18 _pdbx_nmr_details.text ;Chemical synthesized 25-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized [G-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized [A-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized 39-mer RNA corresponding to the HIV-1 dimerization initiation site. ; # _pdbx_nmr_ensemble.entry_id 2D18 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D18 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing XwinNMR 2.6 BRUKER 1 'data analysis' Felix 97.0 'Molecular Simulations' 2 'structure solution' Discover 97.0 Accelrys 3 refinement Discover 97.0 Accelrys 4 # _exptl.entry_id 2D18 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D18 _struct.title 'Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the extended-duplex dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2D18 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DIS, HIV-1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B G 15 O6 ? ? A U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 B G 15 N1 ? ? A U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B A 13 N6 ? ? A G 4 B A 13 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 B A 13 N6 ? ? A A 5 B A 13 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 B A 11 N6 ? ? A G 7 B A 11 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 11 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 11 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 13 N1 ? ? ? 1_555 B A 5 N6 ? ? A A 13 B A 5 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 B U 3 O2 ? ? A G 15 B U 3 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 15 O6 ? ? ? 1_555 B U 3 N3 ? ? A G 15 B U 3 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 16 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 16 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 16 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 17 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 17 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 17 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2D18 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D18 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 A 6 6 6 A A B . n B 1 7 G 7 7 7 G G B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 A 11 11 11 A A B . n B 1 12 C 12 12 12 C C B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 C 17 17 17 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.36 108.50 5.86 0.70 N 2 1 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.82 108.50 4.32 0.70 N 3 1 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.05 108.50 4.55 0.70 N 4 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.62 108.50 5.12 0.70 N 5 1 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.74 108.50 4.24 0.70 N 6 1 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.36 108.50 6.86 0.70 N 7 1 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 112.97 108.50 4.47 0.70 N 8 1 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.28 108.50 4.78 0.70 N 9 2 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.02 108.50 5.52 0.70 N 10 2 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.06 108.50 4.56 0.70 N 11 2 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.31 108.50 4.81 0.70 N 12 2 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.65 108.50 5.15 0.70 N 13 2 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.15 108.50 5.65 0.70 N 14 2 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.02 108.50 4.52 0.70 N 15 2 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.41 108.50 4.91 0.70 N 16 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.45 108.50 4.95 0.70 N 17 2 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.95 108.50 4.45 0.70 N 18 3 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 112.80 108.50 4.30 0.70 N 19 3 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.22 108.50 6.72 0.70 N 20 3 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.28 108.50 4.78 0.70 N 21 3 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.14 108.50 4.64 0.70 N 22 3 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.78 108.50 4.28 0.70 N 23 3 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.07 108.50 4.57 0.70 N 24 3 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.99 108.50 5.49 0.70 N 25 3 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.12 108.50 4.62 0.70 N 26 3 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.93 108.50 4.43 0.70 N 27 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.39 108.50 4.89 0.70 N 28 3 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.79 108.50 4.29 0.70 N 29 4 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.64 108.50 7.14 0.70 N 30 4 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.36 108.50 4.86 0.70 N 31 4 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.64 108.50 5.14 0.70 N 32 4 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.35 108.50 6.85 0.70 N 33 4 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.05 108.50 4.55 0.70 N 34 4 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.32 108.50 4.82 0.70 N 35 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.39 108.50 4.89 0.70 N 36 4 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.14 108.50 4.64 0.70 N 37 5 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 112.72 108.50 4.22 0.70 N 38 5 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.34 108.50 5.84 0.70 N 39 5 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.04 108.50 4.54 0.70 N 40 5 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.32 108.50 4.82 0.70 N 41 5 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.72 108.50 5.22 0.70 N 42 5 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.68 108.50 7.18 0.70 N 43 5 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.09 108.50 4.59 0.70 N 44 5 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.42 108.50 4.92 0.70 N 45 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.21 108.50 4.71 0.70 N 46 5 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.82 108.50 4.32 0.70 N 47 6 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.49 108.50 6.99 0.70 N 48 6 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.17 108.50 4.67 0.70 N 49 6 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.21 108.50 4.71 0.70 N 50 6 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.96 108.50 4.46 0.70 N 51 6 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.46 108.50 6.96 0.70 N 52 6 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.26 108.50 4.76 0.70 N 53 6 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.21 108.50 4.71 0.70 N 54 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.71 108.50 4.21 0.70 N 55 6 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.99 108.50 4.49 0.70 N 56 7 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.92 108.50 7.42 0.70 N 57 7 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.33 108.50 4.83 0.70 N 58 7 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.82 108.50 5.32 0.70 N 59 7 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.73 108.50 4.23 0.70 N 60 7 "C4'" B C 2 ? ? "C3'" B C 2 ? ? "C2'" B C 2 ? ? 96.53 102.60 -6.07 1.00 N 61 7 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.59 108.50 7.09 0.70 N 62 7 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.63 108.50 5.13 0.70 N 63 7 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.41 108.50 4.91 0.70 N 64 7 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.81 108.50 4.31 0.70 N 65 8 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 112.73 108.50 4.23 0.70 N 66 8 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.22 108.50 5.72 0.70 N 67 8 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.35 108.50 4.85 0.70 N 68 8 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.22 108.50 4.72 0.70 N 69 8 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.70 108.50 4.20 0.70 N 70 8 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.76 108.50 4.26 0.70 N 71 8 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 116.55 108.50 8.05 0.70 N 72 8 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.01 108.50 4.51 0.70 N 73 8 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.95 108.50 4.45 0.70 N 74 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.46 108.50 4.96 0.70 N 75 8 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.04 108.50 4.54 0.70 N 76 9 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.96 108.50 5.46 0.70 N 77 9 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.24 108.50 4.74 0.70 N 78 9 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 112.88 108.50 4.38 0.70 N 79 9 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.50 108.50 5.00 0.70 N 80 9 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 114.25 108.50 5.75 0.70 N 81 9 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.87 108.50 7.37 0.70 N 82 9 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.49 108.50 4.99 0.70 N 83 9 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.33 108.50 4.83 0.70 N 84 10 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.24 108.50 6.74 0.70 N 85 10 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.20 108.50 4.70 0.70 N 86 10 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.02 108.50 4.52 0.70 N 87 10 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.47 108.50 4.97 0.70 N 88 10 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.39 108.50 4.89 0.70 N 89 10 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.51 108.50 6.01 0.70 N 90 10 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.64 108.50 5.14 0.70 N 91 10 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.17 108.50 4.67 0.70 N 92 11 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.77 108.50 6.27 0.70 N 93 11 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.77 108.50 4.27 0.70 N 94 11 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 112.85 108.50 4.35 0.70 N 95 11 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.09 108.50 4.59 0.70 N 96 11 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.02 108.50 4.52 0.70 N 97 11 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.33 108.50 5.83 0.70 N 98 11 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.16 108.50 4.66 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 2 ? ? 0.063 'SIDE CHAIN' 2 1 G A 4 ? ? 0.089 'SIDE CHAIN' 3 1 A A 11 ? ? 0.060 'SIDE CHAIN' 4 1 G A 15 ? ? 0.065 'SIDE CHAIN' 5 1 A B 5 ? ? 0.066 'SIDE CHAIN' 6 1 A B 11 ? ? 0.064 'SIDE CHAIN' 7 1 G B 15 ? ? 0.104 'SIDE CHAIN' 8 2 C A 2 ? ? 0.077 'SIDE CHAIN' 9 2 A A 11 ? ? 0.063 'SIDE CHAIN' 10 2 G A 15 ? ? 0.092 'SIDE CHAIN' 11 2 C B 2 ? ? 0.063 'SIDE CHAIN' 12 2 G B 15 ? ? 0.082 'SIDE CHAIN' 13 3 G A 4 ? ? 0.066 'SIDE CHAIN' 14 3 A A 11 ? ? 0.067 'SIDE CHAIN' 15 3 G A 15 ? ? 0.095 'SIDE CHAIN' 16 3 C B 2 ? ? 0.069 'SIDE CHAIN' 17 3 G B 9 ? ? 0.083 'SIDE CHAIN' 18 3 A B 11 ? ? 0.061 'SIDE CHAIN' 19 3 G B 15 ? ? 0.073 'SIDE CHAIN' 20 4 G A 4 ? ? 0.055 'SIDE CHAIN' 21 4 A A 6 ? ? 0.055 'SIDE CHAIN' 22 4 A A 11 ? ? 0.074 'SIDE CHAIN' 23 4 G A 15 ? ? 0.097 'SIDE CHAIN' 24 4 G B 4 ? ? 0.072 'SIDE CHAIN' 25 4 A B 11 ? ? 0.063 'SIDE CHAIN' 26 4 G B 15 ? ? 0.092 'SIDE CHAIN' 27 5 C A 2 ? ? 0.069 'SIDE CHAIN' 28 5 G A 15 ? ? 0.091 'SIDE CHAIN' 29 5 G B 4 ? ? 0.054 'SIDE CHAIN' 30 5 A B 13 ? ? 0.088 'SIDE CHAIN' 31 5 G B 15 ? ? 0.068 'SIDE CHAIN' 32 6 G A 4 ? ? 0.078 'SIDE CHAIN' 33 6 A A 11 ? ? 0.061 'SIDE CHAIN' 34 6 G A 15 ? ? 0.098 'SIDE CHAIN' 35 6 G B 4 ? ? 0.065 'SIDE CHAIN' 36 6 A B 6 ? ? 0.054 'SIDE CHAIN' 37 6 G B 9 ? ? 0.077 'SIDE CHAIN' 38 6 A B 13 ? ? 0.051 'SIDE CHAIN' 39 6 G B 15 ? ? 0.090 'SIDE CHAIN' 40 7 G A 4 ? ? 0.089 'SIDE CHAIN' 41 7 G A 15 ? ? 0.076 'SIDE CHAIN' 42 7 A B 11 ? ? 0.058 'SIDE CHAIN' 43 7 G B 15 ? ? 0.067 'SIDE CHAIN' 44 8 G A 4 ? ? 0.061 'SIDE CHAIN' 45 8 G A 9 ? ? 0.072 'SIDE CHAIN' 46 8 A A 11 ? ? 0.064 'SIDE CHAIN' 47 8 G A 15 ? ? 0.081 'SIDE CHAIN' 48 8 G B 4 ? ? 0.084 'SIDE CHAIN' 49 8 G B 7 ? ? 0.056 'SIDE CHAIN' 50 8 G B 9 ? ? 0.090 'SIDE CHAIN' 51 8 G B 15 ? ? 0.095 'SIDE CHAIN' 52 9 C A 2 ? ? 0.064 'SIDE CHAIN' 53 9 G A 4 ? ? 0.067 'SIDE CHAIN' 54 9 A A 13 ? ? 0.058 'SIDE CHAIN' 55 9 A B 11 ? ? 0.064 'SIDE CHAIN' 56 9 G B 15 ? ? 0.104 'SIDE CHAIN' 57 10 G A 4 ? ? 0.071 'SIDE CHAIN' 58 10 A A 13 ? ? 0.068 'SIDE CHAIN' 59 10 C B 2 ? ? 0.066 'SIDE CHAIN' 60 10 A B 11 ? ? 0.062 'SIDE CHAIN' 61 10 G B 15 ? ? 0.088 'SIDE CHAIN' 62 11 C A 2 ? ? 0.068 'SIDE CHAIN' 63 11 G A 4 ? ? 0.099 'SIDE CHAIN' 64 11 G A 9 ? ? 0.083 'SIDE CHAIN' 65 11 C B 2 ? ? 0.069 'SIDE CHAIN' 66 11 G B 7 ? ? 0.062 'SIDE CHAIN' 67 11 G B 15 ? ? 0.075 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D18 'double helix' 2D18 'a-form double helix' 2D18 'bulge loop' 2D18 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 17 1_555 -0.140 -0.080 0.545 7.918 -28.605 -6.154 1 A_G1:C17_B A 1 ? B 17 ? 19 1 1 A C 2 1_555 B G 16 1_555 -0.525 -0.121 0.457 4.225 -35.587 -5.247 2 A_C2:G16_B A 2 ? B 16 ? 19 1 1 A U 3 1_555 B G 15 1_555 1.684 -0.302 0.812 -5.883 -29.570 1.898 3 A_U3:G15_B A 3 ? B 15 ? 28 1 1 A G 4 1_555 B C 14 1_555 -0.748 -0.269 0.471 -5.094 -25.536 -4.340 4 A_G4:C14_B A 4 ? B 14 ? 19 1 1 A A 5 1_555 B A 13 1_555 1.551 1.520 0.447 -3.989 -17.240 -16.929 5 A_A5:A13_B A 5 ? B 13 ? ? 1 1 A G 7 1_555 B C 12 1_555 0.769 -0.228 1.216 12.423 -13.906 -11.805 6 A_G7:C12_B A 7 ? B 12 ? 19 1 1 A U 8 1_555 B A 11 1_555 -0.320 -0.095 0.764 12.296 -18.416 -4.253 7 A_U8:A11_B A 8 ? B 11 ? 20 1 1 A G 9 1_555 B C 10 1_555 -0.683 -0.189 0.133 7.709 -22.743 -0.578 8 A_G9:C10_B A 9 ? B 10 ? 19 1 1 A C 10 1_555 B G 9 1_555 -0.217 0.016 -0.138 8.790 -25.685 0.427 9 A_C10:G9_B A 10 ? B 9 ? 19 1 1 A A 11 1_555 B U 8 1_555 0.439 0.019 0.312 -11.185 -23.354 -1.615 10 A_A11:U8_B A 11 ? B 8 ? 20 1 1 A C 12 1_555 B G 7 1_555 -0.359 -0.047 0.662 -17.225 -23.819 -5.695 11 A_C12:G7_B A 12 ? B 7 ? 19 1 1 A A 13 1_555 B A 5 1_555 1.696 1.649 -0.335 5.237 -14.913 -7.925 12 A_A13:A5_B A 13 ? B 5 ? ? 1 1 A C 14 1_555 B G 4 1_555 -0.243 0.044 -0.138 13.539 -21.319 -2.383 13 A_C14:G4_B A 14 ? B 4 ? 19 1 1 A G 15 1_555 B U 3 1_555 -1.819 -0.241 0.564 -0.246 -28.384 5.055 14 A_G15:U3_B A 15 ? B 3 ? 28 1 1 A G 16 1_555 B C 2 1_555 0.449 -0.080 0.223 -12.032 -33.965 -3.195 15 A_G16:C2_B A 16 ? B 2 ? 19 1 1 A C 17 1_555 B G 1 1_555 0.306 -0.085 0.598 -14.534 -25.282 -5.295 16 A_C17:G1_B A 17 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 17 1_555 A C 2 1_555 B G 16 1_555 -0.295 -1.761 3.024 -3.023 0.968 34.142 -3.128 0.063 2.989 1.645 5.135 34.285 1 AA_G1C2:G16C17_BB A 1 ? B 17 ? A 2 ? B 16 ? 1 A C 2 1_555 B G 16 1_555 A U 3 1_555 B G 15 1_555 1.002 -0.830 3.385 4.222 7.511 42.424 -1.881 -0.934 3.279 10.252 -5.763 43.251 2 AA_C2U3:G15G16_BB A 2 ? B 16 ? A 3 ? B 15 ? 1 A U 3 1_555 B G 15 1_555 A G 4 1_555 B C 14 1_555 -0.163 -1.609 2.401 4.990 20.833 28.747 -4.375 0.685 1.002 36.281 -8.690 35.716 3 AA_U3G4:C14G15_BB A 3 ? B 15 ? A 4 ? B 14 ? 1 A G 4 1_555 B C 14 1_555 A A 5 1_555 B A 13 1_555 -0.520 -1.452 3.064 0.333 0.334 45.249 -1.915 0.704 3.050 0.435 -0.433 45.252 4 AA_G4A5:A13C14_BB A 4 ? B 14 ? A 5 ? B 13 ? 1 A A 5 1_555 B A 13 1_555 A G 7 1_555 B C 12 1_555 -0.718 -3.241 4.429 22.846 -2.812 36.304 -4.065 4.055 3.619 -4.052 -32.920 42.778 5 AA_A5G7:C12A13_BB A 5 ? B 13 ? A 7 ? B 12 ? 1 A G 7 1_555 B C 12 1_555 A U 8 1_555 B A 11 1_555 0.467 -2.051 3.030 1.736 2.794 27.682 -4.858 -0.596 2.837 5.813 -3.612 27.873 6 AA_G7U8:A11C12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A U 8 1_555 B A 11 1_555 A G 9 1_555 B C 10 1_555 0.097 -1.540 2.924 2.078 16.796 33.183 -4.192 0.067 1.950 27.312 -3.379 37.141 7 AA_U8G9:C10A11_BB A 8 ? B 11 ? A 9 ? B 10 ? 1 A G 9 1_555 B C 10 1_555 A C 10 1_555 B G 9 1_555 0.128 -1.541 3.027 0.831 3.004 34.895 -2.970 -0.099 2.891 4.997 -1.383 35.030 8 AA_G9C10:G9C10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A C 10 1_555 B G 9 1_555 A A 11 1_555 B U 8 1_555 0.042 -1.615 3.446 -2.471 17.315 36.135 -4.248 -0.330 2.445 26.117 3.727 40.018 9 AA_C10A11:U8G9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A A 11 1_555 B U 8 1_555 A C 12 1_555 B G 7 1_555 -0.493 -2.010 3.080 -0.668 0.972 31.396 -3.881 0.793 3.027 1.795 1.234 31.417 10 AA_A11C12:G7U8_BB A 11 ? B 8 ? A 12 ? B 7 ? 1 A C 12 1_555 B G 7 1_555 A A 13 1_555 B A 5 1_555 0.474 -2.411 4.155 -16.922 5.341 42.903 -3.619 -2.347 3.438 6.957 22.044 46.267 11 AA_C12A13:A5G7_BB A 12 ? B 7 ? A 13 ? B 5 ? 1 A A 13 1_555 B A 5 1_555 A C 14 1_555 B G 4 1_555 0.244 -2.248 2.739 -0.834 9.234 19.119 -8.704 -0.898 1.492 25.919 2.341 21.230 12 AA_A13C14:G4A5_BB A 13 ? B 5 ? A 14 ? B 4 ? 1 A C 14 1_555 B G 4 1_555 A G 15 1_555 B U 3 1_555 0.333 -1.758 2.889 -8.856 21.846 32.485 -4.392 -1.224 1.359 34.033 13.796 39.949 13 AA_C14G15:U3G4_BB A 14 ? B 4 ? A 15 ? B 3 ? 1 A G 15 1_555 B U 3 1_555 A G 16 1_555 B C 2 1_555 -1.213 -0.898 3.425 -4.027 6.879 42.620 -1.915 1.234 3.344 9.367 5.483 43.325 14 AA_G15G16:C2U3_BB A 15 ? B 3 ? A 16 ? B 2 ? 1 A G 16 1_555 B C 2 1_555 A C 17 1_555 B G 1 1_555 0.335 -1.905 3.013 2.870 1.177 35.073 -3.310 -0.163 2.967 1.948 -4.751 35.206 15 AA_G16C17:G1C2_BB A 16 ? B 2 ? A 17 ? B 1 ? #