data_2D1B # _entry.id 2D1B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D1B pdb_00002d1b 10.2210/pdb2d1b/pdb RCSB RCSB024864 ? ? WWPDB D_1000024864 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D17 'Solution structure of stem-bulge-stem region of DIS' unspecified PDB 2D18 'Solution structure of loop region of the extended-duplex dimer' unspecified PDB 2D19 'Solution structure of loop region of the kissing-loop dimer' unspecified PDB 2D1A 'Solution structure model of the extended-duplex dimer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D1B _pdbx_database_status.recvd_initial_deposition_date 2005-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Takahashi, K.' 2 'Noguchi, S.' 3 'Takaku, H.' 4 'Koyanagi, Y.' 5 'Yamamoto, N.' 6 'Kawai, G.' 7 # _citation.id primary _citation.title 'Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 138 _citation.page_first 583 _citation.page_last 592 _citation.year 2005 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16272570 _citation.pdbx_database_id_DOI 10.1093/jb/mvi158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Takahashi, K.' 2 ? primary 'Noguchi, S.' 3 ? primary 'Takaku, H.' 4 ? primary 'Koyanagi, Y.' 5 ? primary 'Yamamoto, N.' 6 ? primary 'Kawai, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description RNA _entity.formula_weight 12654.604 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCC _entity_poly.pdbx_seq_one_letter_code_can GGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 G n 1 8 C n 1 9 U n 1 10 U n 1 11 G n 1 12 C n 1 13 U n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 G n 1 20 C n 1 21 A n 1 22 C n 1 23 A n 1 24 C n 1 25 G n 1 26 G n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 A n 1 32 G n 1 33 G n 1 34 C n 1 35 G n 1 36 A n 1 37 C n 1 38 C n 1 39 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2D1B _struct_ref.pdbx_db_accession 2D1B _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D1B A 1 ? 39 ? 2D1B 1 ? 39 ? 1 39 2 1 2D1B B 1 ? 39 ? 2D1B 1 ? 39 ? 1 39 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 2 2 1 '1D-HSQC-selected spectrum' 4 3 1 '1D-HSQC-filtered spectrum' 4 4 1 '2D NOESY' 7 5 2 '2D TOCSY' 1 6 2 '2D NOESY' 1 7 2 '2D-w2-filtered NOESY' 3 8 2 '2D-w2-filtered NOESY' 5 9 2 '2D TOCSY' 6 10 2 '2D NOESY' 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 7.0 '50mM NaCl' . K 2 298 ambient 7.0 '50mM NaCl' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 2 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.3mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 4 '0.3mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.1mM [A-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 6 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 7 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _pdbx_nmr_refine.entry_id 2D1B _pdbx_nmr_refine.method 'minimization of model RNA' _pdbx_nmr_refine.details ;Solution structures of DIS39 were constructed by combining the structure parts. Structures of the loop region of the kissing-loop dimer (2D19) and stem-bulge-stem region (2D17) were combined by superimposing the two base pairs, C12:G26 and U13:G25. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2D1B _pdbx_nmr_details.text 'model structure was constructed by combining the structure parts' # _pdbx_nmr_ensemble.entry_id 2D1B _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D1B _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'model structure' # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Discover _pdbx_nmr_software.version 97.0 _pdbx_nmr_software.authors Accelrys _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 2D1B _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D1B _struct.title 'Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D1B _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DIS, HIV-1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 1 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 1 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 1 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 2 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 2 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 2 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 3 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A G 33 N1 ? ? A U 4 A G 33 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog11 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 4 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 4 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 5 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 5 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 5 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 6 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 6 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 6 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 31 N1 ? ? A G 7 A A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 31 N6 ? ? A G 7 A A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 8 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 8 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 8 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 9 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 9 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 10 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 10 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 11 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 11 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 11 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 12 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 12 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 12 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 13 N3 ? ? ? 1_555 A G 25 O6 ? ? A U 13 A G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 25 N1 ? ? A U 13 A G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 14 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 14 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 14 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 15 N1 ? ? ? 1_555 A A 23 N6 ? ? A A 15 A A 23 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog40 hydrog ? ? A A 15 N6 ? ? ? 1_555 A A 23 N1 ? ? A A 15 A A 23 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog41 hydrog ? ? A G 17 N7 ? ? ? 1_555 B A 16 N6 ? ? A G 17 B A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog42 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 18 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 18 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 18 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 18 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 21 N6 ? ? ? 1_555 B G 17 O6 ? ? A A 21 B G 17 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog54 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 18 N3 ? ? A A 21 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 18 O4 ? ? A A 21 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 32 A C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog60 hydrog ? ? A G 33 N2 ? ? ? 1_555 A G 35 O6 ? ? A G 33 A G 35 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog61 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 3 O6 ? ? ? 1_555 B A 36 N6 ? ? B G 3 B A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog68 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B U 4 O4 ? ? ? 1_555 B G 33 N1 ? ? B U 4 B G 33 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog72 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 36 N1 ? ? B U 4 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 36 N6 ? ? B U 4 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 34 N3 ? ? B G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 34 O2 ? ? B G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 34 N4 ? ? B G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 31 N1 ? ? B G 7 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog81 hydrog ? ? B G 7 O6 ? ? ? 1_555 B A 31 N6 ? ? B G 7 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog82 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 29 N1 ? ? B U 9 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 9 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 28 N1 ? ? B U 10 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 28 N6 ? ? B U 10 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 13 N3 ? ? ? 1_555 B G 25 O6 ? ? B U 13 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog96 hydrog ? ? B U 13 O2 ? ? ? 1_555 B G 25 N1 ? ? B U 13 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog97 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 24 N3 ? ? B G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 24 O2 ? ? B G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 24 N4 ? ? B G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B A 15 N1 ? ? ? 1_555 B A 23 N6 ? ? B A 15 B A 23 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog101 hydrog ? ? B A 15 N6 ? ? ? 1_555 B A 23 N1 ? ? B A 15 B A 23 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog102 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 34 N3 ? ? B G 32 B C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog103 hydrog ? ? B G 33 N2 ? ? ? 1_555 B G 35 O6 ? ? B G 33 B G 35 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2D1B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D1B _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 U 4 4 4 U U B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 U 10 10 10 U U B . n B 1 11 G 11 11 11 G G B . n B 1 12 C 12 12 12 C C B . n B 1 13 U 13 13 13 U U B . n B 1 14 G 14 14 14 G G B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 C 22 22 22 C C B . n B 1 23 A 23 23 23 A A B . n B 1 24 C 24 24 24 C C B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 C 27 27 27 C C B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 A 31 31 31 A A B . n B 1 32 G 32 32 32 G G B . n B 1 33 G 33 33 33 G G B . n B 1 34 C 34 34 34 C C B . n B 1 35 G 35 35 35 G G B . n B 1 36 A 36 36 36 A A B . n B 1 37 C 37 37 37 C C B . n B 1 38 C 38 38 38 C C B . n B 1 39 C 39 39 39 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.61 108.50 5.11 0.70 N 2 1 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 112.70 108.50 4.20 0.70 N 3 1 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.95 108.50 4.45 0.70 N 4 1 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 113.26 108.50 4.76 0.70 N 5 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.35 108.50 4.85 0.70 N 6 1 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.86 108.50 4.36 0.70 N 7 1 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.17 108.50 4.67 0.70 N 8 1 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.23 108.50 4.73 0.70 N 9 1 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 113.23 108.50 4.73 0.70 N 10 1 "O4'" A G 30 ? ? "C1'" A G 30 ? ? N9 A G 30 ? ? 113.19 108.50 4.69 0.70 N 11 1 "O4'" A C 37 ? ? "C1'" A C 37 ? ? N1 A C 37 ? ? 112.76 108.50 4.26 0.70 N 12 1 "O4'" A C 38 ? ? "C1'" A C 38 ? ? N1 A C 38 ? ? 113.21 108.50 4.71 0.70 N 13 1 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.58 108.50 5.08 0.70 N 14 1 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 112.71 108.50 4.21 0.70 N 15 1 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.14 108.50 4.64 0.70 N 16 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.34 108.50 4.84 0.70 N 17 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.46 108.50 4.96 0.70 N 18 1 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.59 108.50 5.09 0.70 N 19 1 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 113.25 108.50 4.75 0.70 N 20 1 "O4'" B C 22 ? ? "C1'" B C 22 ? ? N1 B C 22 ? ? 112.97 108.50 4.47 0.70 N 21 1 "O4'" B C 24 ? ? "C1'" B C 24 ? ? N1 B C 24 ? ? 112.88 108.50 4.38 0.70 N 22 1 "O4'" B G 30 ? ? "C1'" B G 30 ? ? N9 B G 30 ? ? 113.03 108.50 4.53 0.70 N 23 1 "O4'" B C 37 ? ? "C1'" B C 37 ? ? N1 B C 37 ? ? 112.91 108.50 4.41 0.70 N 24 1 "O4'" B C 38 ? ? "C1'" B C 38 ? ? N1 B C 38 ? ? 113.21 108.50 4.71 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 14 ? ? 0.079 'SIDE CHAIN' 2 1 A A 15 ? ? 0.160 'SIDE CHAIN' 3 1 G A 25 ? ? 0.056 'SIDE CHAIN' 4 1 G A 35 ? ? 0.069 'SIDE CHAIN' 5 1 G B 14 ? ? 0.068 'SIDE CHAIN' 6 1 G B 25 ? ? 0.057 'SIDE CHAIN' 7 1 G B 35 ? ? 0.067 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D1B 'double helix' 2D1B 'a-form double helix' 2D1B 'bulge loop' 2D1B 'mismatched base pair' 2D1B 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 39 1_555 -0.755 -0.245 0.519 3.794 -19.224 -3.650 1 A_G1:C39_A A 1 ? A 39 ? 19 1 1 A G 2 1_555 A C 38 1_555 0.383 -0.035 0.262 -5.450 -24.569 -2.777 2 A_G2:C38_A A 2 ? A 38 ? 19 1 1 A G 3 1_555 A C 37 1_555 0.033 -0.004 0.161 -14.751 -30.217 -1.295 3 A_G3:C37_A A 3 ? A 37 ? 19 1 1 A U 4 1_555 A A 36 1_555 0.491 -0.113 0.637 -13.115 -23.782 -1.787 4 A_U4:A36_A A 4 ? A 36 ? 20 1 1 A C 5 1_555 A G 35 1_555 0.904 -0.307 0.455 -4.189 -18.172 -3.769 5 A_C5:G35_A A 5 ? A 35 ? 19 1 1 A G 6 1_555 A C 34 1_555 0.246 0.000 -0.206 -22.810 -38.979 -1.574 6 A_G6:C34_A A 6 ? A 34 ? 19 1 1 A G 7 1_555 A A 31 1_555 0.437 1.642 0.047 17.906 -25.242 -22.406 7 A_G7:A31_A A 7 ? A 31 ? 8 ? 1 A C 8 1_555 A G 30 1_555 -0.203 -0.083 0.440 19.623 -31.931 -5.998 8 A_C8:G30_A A 8 ? A 30 ? 19 1 1 A U 9 1_555 A A 29 1_555 0.431 -0.167 0.720 -6.489 -24.544 -2.695 9 A_U9:A29_A A 9 ? A 29 ? 20 1 1 A U 10 1_555 A A 28 1_555 0.424 -0.110 0.457 -4.141 -16.525 -4.618 10 A_U10:A28_A A 10 ? A 28 ? 20 1 1 A G 11 1_555 A C 27 1_555 0.155 -0.013 0.397 0.639 -22.215 -2.623 11 A_G11:C27_A A 11 ? A 27 ? 19 1 1 A C 12 1_555 A G 26 1_555 -0.236 -0.052 0.318 5.575 -28.751 -2.766 12 A_C12:G26_A A 12 ? A 26 ? 19 1 1 A U 13 1_555 A G 25 1_555 1.472 -0.383 0.764 -2.615 -19.460 -0.635 13 A_U13:G25_A A 13 ? A 25 ? 28 1 1 A G 14 1_555 A C 24 1_555 0.055 -0.006 -0.055 -2.874 -25.596 -0.763 14 A_G14:C24_A A 14 ? A 24 ? 19 1 1 A A 15 1_555 A A 23 1_555 -1.399 -1.101 0.273 47.188 -7.613 172.111 15 A_A15:A23_A A 15 ? A 23 ? 1 1 1 B G 17 1_555 A C 22 1_555 0.184 -0.064 0.508 -2.506 -25.690 -4.286 16 B_G17:C22_A B 17 ? A 22 ? 19 1 1 B U 18 1_555 A A 21 1_555 0.521 -0.129 0.494 -0.504 -22.441 0.859 17 B_U18:A21_A B 18 ? A 21 ? 20 1 1 B G 19 1_555 A C 20 1_555 0.213 0.010 0.125 -4.182 -22.122 -1.423 18 B_G19:C20_A B 19 ? A 20 ? 19 1 1 B C 20 1_555 A G 19 1_555 -0.104 0.009 0.157 3.048 -20.679 -1.205 19 B_C20:G19_A B 20 ? A 19 ? 19 1 1 B A 21 1_555 A U 18 1_555 -0.404 -0.088 0.314 -1.655 -19.966 -0.137 20 B_A21:U18_A B 21 ? A 18 ? 20 1 1 B C 22 1_555 A G 17 1_555 -0.256 0.011 0.392 2.328 -17.286 -2.638 21 B_C22:G17_A B 22 ? A 17 ? 19 1 1 B A 23 1_555 B A 15 1_555 1.423 1.539 0.430 -28.520 -7.334 -179.545 22 B_A23:A15_B B 23 ? B 15 ? 1 2 1 B C 24 1_555 B G 14 1_555 0.022 -0.024 0.109 11.106 -26.720 -2.497 23 B_C24:G14_B B 24 ? B 14 ? 19 1 1 B G 25 1_555 B U 13 1_555 -1.448 -0.357 0.726 3.266 -20.653 -0.568 24 B_G25:U13_B B 25 ? B 13 ? 28 1 1 B G 26 1_555 B C 12 1_555 0.144 -0.075 0.439 -3.278 -27.666 -3.667 25 B_G26:C12_B B 26 ? B 12 ? 19 1 1 B C 27 1_555 B G 11 1_555 -0.187 -0.029 0.461 -0.432 -23.042 -3.415 26 B_C27:G11_B B 27 ? B 11 ? 19 1 1 B A 28 1_555 B U 10 1_555 -0.391 -0.112 0.514 3.915 -17.783 -5.593 27 B_A28:U10_B B 28 ? B 10 ? 20 1 1 B A 29 1_555 B U 9 1_555 -0.384 -0.170 0.762 6.599 -25.212 -4.375 28 B_A29:U9_B B 29 ? B 9 ? 20 1 1 B G 30 1_555 B C 8 1_555 0.252 -0.096 0.497 -16.870 -31.609 -6.609 29 B_G30:C8_B B 30 ? B 8 ? 19 1 1 B A 31 1_555 B G 7 1_555 -0.348 1.641 0.026 -15.113 -26.619 -22.470 30 B_A31:G7_B B 31 ? B 7 ? 8 ? 1 B C 34 1_555 B G 6 1_555 -0.311 0.010 -0.230 23.286 -39.315 -1.937 31 B_C34:G6_B B 34 ? B 6 ? 19 1 1 B G 35 1_555 B C 5 1_555 -0.934 -0.317 0.414 1.914 -19.863 -3.299 32 B_G35:C5_B B 35 ? B 5 ? 19 1 1 B A 36 1_555 B U 4 1_555 -0.473 -0.100 0.699 8.842 -24.948 0.020 33 B_A36:U4_B B 36 ? B 4 ? 20 1 1 B C 37 1_555 B G 3 1_555 -0.214 -0.021 0.334 10.668 -31.094 -2.037 34 B_C37:G3_B B 37 ? B 3 ? 19 1 1 B C 38 1_555 B G 2 1_555 -0.364 -0.069 0.440 3.953 -24.835 -4.210 35 B_C38:G2_B B 38 ? B 2 ? 19 1 1 B C 39 1_555 B G 1 1_555 0.671 -0.261 0.581 -2.367 -20.818 -5.450 36 B_C39:G1_B B 39 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 39 1_555 A G 2 1_555 A C 38 1_555 -0.284 -1.444 3.319 0.092 5.661 39.817 -2.734 0.423 3.093 8.261 -0.134 40.201 1 AA_G1G2:C38C39_AA A 1 ? A 39 ? A 2 ? A 38 ? 1 A G 2 1_555 A C 38 1_555 A G 3 1_555 A C 37 1_555 0.026 -1.610 3.257 0.765 9.638 32.421 -4.216 0.071 2.682 16.800 -1.334 33.795 2 AA_G2G3:C37C38_AA A 2 ? A 38 ? A 3 ? A 37 ? 1 A G 3 1_555 A C 37 1_555 A U 4 1_555 A A 36 1_555 0.043 -1.480 3.038 -1.445 2.884 34.628 -2.876 -0.272 2.905 4.832 2.422 34.773 3 AA_G3U4:A36C37_AA A 3 ? A 37 ? A 4 ? A 36 ? 1 A U 4 1_555 A A 36 1_555 A C 5 1_555 A G 35 1_555 0.065 -1.388 2.827 3.667 3.218 34.822 -2.705 0.356 2.684 5.345 -6.090 35.151 4 AA_U4C5:G35A36_AA A 4 ? A 36 ? A 5 ? A 35 ? 1 A C 5 1_555 A G 35 1_555 A G 6 1_555 A C 34 1_555 0.253 -1.517 3.374 9.833 21.527 30.646 -4.734 0.729 1.937 34.936 -15.957 38.546 5 AA_C5G6:C34G35_AA A 5 ? A 35 ? A 6 ? A 34 ? 1 A G 6 1_555 A C 34 1_555 A G 7 1_555 A A 31 1_555 1.029 -2.217 3.433 -29.886 -2.462 52.234 -2.103 -2.540 2.643 -2.571 31.211 59.700 6 AA_G6G7:A31C34_AA A 6 ? A 34 ? A 7 ? A 31 ? 1 A G 7 1_555 A A 31 1_555 A C 8 1_555 A G 30 1_555 1.601 -1.222 2.775 -1.609 2.556 36.193 -2.256 -2.754 2.614 4.106 2.584 36.315 7 AA_G7C8:G30A31_AA A 7 ? A 31 ? A 8 ? A 30 ? 1 A C 8 1_555 A G 30 1_555 A U 9 1_555 A A 29 1_555 0.306 -1.724 3.665 -0.858 6.008 42.354 -3.017 -0.512 3.395 8.264 1.180 42.767 8 AA_C8U9:A29G30_AA A 8 ? A 30 ? A 9 ? A 29 ? 1 A U 9 1_555 A A 29 1_555 A U 10 1_555 A A 28 1_555 0.039 -1.742 2.948 3.826 0.187 33.883 -2.999 0.480 2.925 0.320 -6.539 34.092 9 AA_U9U10:A28A29_AA A 9 ? A 29 ? A 10 ? A 28 ? 1 A U 10 1_555 A A 28 1_555 A G 11 1_555 A C 27 1_555 -0.060 -1.664 2.826 0.047 11.332 29.523 -4.686 0.117 2.063 21.275 -0.089 31.578 10 AA_U10G11:C27A28_AA A 10 ? A 28 ? A 11 ? A 27 ? 1 A G 11 1_555 A C 27 1_555 A C 12 1_555 A G 26 1_555 -0.165 -1.637 2.962 -0.701 0.689 31.282 -3.152 0.187 2.929 1.278 1.300 31.297 11 AA_G11C12:G26C27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A C 12 1_555 A G 26 1_555 A U 13 1_555 A G 25 1_555 0.439 -1.130 3.365 -1.042 5.344 41.965 -2.116 -0.716 3.192 7.425 1.447 42.301 12 AA_C12U13:G25G26_AA A 12 ? A 26 ? A 13 ? A 25 ? 1 A U 13 1_555 A G 25 1_555 A G 14 1_555 A C 24 1_555 -0.081 -1.496 2.806 9.186 16.179 30.529 -4.210 1.136 1.731 27.731 -15.745 35.636 13 AA_U13G14:C24G25_AA A 13 ? A 25 ? A 14 ? A 24 ? 1 A G 14 1_555 A C 24 1_555 A A 15 1_555 A A 23 1_555 -0.490 -3.337 -0.045 -146.680 76.438 -14.655 1.468 -0.659 1.093 -41.160 -78.983 -165.522 14 AA_G14A15:A23C24_AA A 14 ? A 24 ? A 15 ? A 23 ? 1 A A 15 1_555 A A 23 1_555 B G 17 1_555 A C 22 1_555 -1.455 -3.613 -0.093 84.343 -129.961 85.804 -1.563 0.910 1.557 -68.276 -44.310 161.705 15 AB_A15G17:C22A23_AA A 15 ? A 23 ? B 17 ? A 22 ? 1 B G 17 1_555 A C 22 1_555 B U 18 1_555 A A 21 1_555 0.067 -1.693 3.025 -0.104 -0.916 36.217 -2.603 -0.121 3.065 -1.473 0.168 36.228 16 BB_G17U18:A21C22_AA B 17 ? A 22 ? B 18 ? A 21 ? 1 B U 18 1_555 A A 21 1_555 B G 19 1_555 A C 20 1_555 -0.184 -1.559 2.957 2.457 15.698 30.861 -4.541 0.610 1.942 27.344 -4.281 34.622 17 BB_U18G19:C20A21_AA B 18 ? A 21 ? B 19 ? A 20 ? 1 B G 19 1_555 A C 20 1_555 B C 20 1_555 A G 19 1_555 0.105 -1.819 2.923 -0.078 1.100 28.715 -3.883 -0.227 2.853 2.216 0.158 28.736 18 BB_G19C20:G19C20_AA B 19 ? A 20 ? B 20 ? A 19 ? 1 B C 20 1_555 A G 19 1_555 B A 21 1_555 A U 18 1_555 0.196 -1.691 3.002 -0.504 15.497 30.509 -4.846 -0.398 1.938 27.345 0.889 34.139 19 BB_C20A21:U18G19_AA B 20 ? A 19 ? B 21 ? A 18 ? 1 B A 21 1_555 A U 18 1_555 B C 22 1_555 A G 17 1_555 0.195 -2.039 3.018 0.178 -1.109 33.004 -3.411 -0.316 3.084 -1.951 -0.313 33.023 20 BB_A21C22:G17U18_AA B 21 ? A 18 ? B 22 ? A 17 ? 1 B C 22 1_555 A G 17 1_555 B A 23 1_555 B A 15 1_555 -1.467 -2.483 2.662 9.842 12.998 116.958 -1.553 0.935 2.404 7.605 -5.758 117.667 21 BB_C22A23:A15G17_BA B 22 ? A 17 ? B 23 ? B 15 ? 1 B A 23 1_555 B A 15 1_555 B C 24 1_555 B G 14 1_555 -1.699 -0.452 3.074 -8.773 -4.676 -56.048 0.708 -2.222 2.759 4.933 -9.255 -56.852 22 BB_A23C24:G14A15_BB B 23 ? B 15 ? B 24 ? B 14 ? 1 B C 24 1_555 B G 14 1_555 B G 25 1_555 B U 13 1_555 0.141 -1.695 2.923 -8.258 15.486 31.334 -4.489 -1.152 1.821 26.254 14.000 35.806 23 BB_C24G25:U13G14_BB B 24 ? B 14 ? B 25 ? B 13 ? 1 B G 25 1_555 B U 13 1_555 B G 26 1_555 B C 12 1_555 -0.557 -1.217 3.302 -0.260 3.291 40.577 -2.112 0.772 3.201 4.735 0.375 40.706 24 BB_G25G26:C12U13_BB B 25 ? B 13 ? B 26 ? B 12 ? 1 B G 26 1_555 B C 12 1_555 B C 27 1_555 B G 11 1_555 0.077 -1.655 2.995 0.660 0.016 32.196 -2.986 -0.031 2.995 0.029 -1.190 32.203 25 BB_G26C27:G11C12_BB B 26 ? B 12 ? B 27 ? B 11 ? 1 B C 27 1_555 B G 11 1_555 B A 28 1_555 B U 10 1_555 0.041 -1.631 2.821 -0.095 10.477 30.438 -4.413 -0.088 2.155 19.252 0.175 32.150 26 BB_C27A28:U10G11_BB B 27 ? B 11 ? B 28 ? B 10 ? 1 B A 28 1_555 B U 10 1_555 B A 29 1_555 B U 9 1_555 -0.136 -1.704 2.926 -3.775 -0.563 34.082 -2.810 -0.303 2.951 -0.957 6.415 34.289 27 BB_A28A29:U9U10_BB B 28 ? B 10 ? B 29 ? B 9 ? 1 B A 29 1_555 B U 9 1_555 B G 30 1_555 B C 8 1_555 -0.289 -1.653 3.583 0.857 5.013 42.209 -2.822 0.491 3.368 6.931 -1.185 42.500 28 BB_A29G30:C8U9_BB B 29 ? B 9 ? B 30 ? B 8 ? 1 B G 30 1_555 B C 8 1_555 B A 31 1_555 B G 7 1_555 -1.562 -1.004 2.791 1.696 1.777 37.169 -1.770 2.633 2.671 2.785 -2.657 37.247 29 BB_G30A31:G7C8_BB B 30 ? B 8 ? B 31 ? B 7 ? 1 B A 31 1_555 B G 7 1_555 B C 34 1_555 B G 6 1_555 -0.895 -2.275 3.411 29.053 -0.900 50.866 -2.295 2.462 2.632 -0.964 -31.102 58.101 30 BB_A31C34:G6G7_BB B 31 ? B 7 ? B 34 ? B 6 ? 1 B C 34 1_555 B G 6 1_555 B G 35 1_555 B C 5 1_555 -0.232 -1.576 3.439 -9.827 22.370 30.583 -4.864 -0.752 1.894 36.059 15.841 38.962 31 BB_C34G35:C5G6_BB B 34 ? B 6 ? B 35 ? B 5 ? 1 B G 35 1_555 B C 5 1_555 B A 36 1_555 B U 4 1_555 0.032 -1.399 2.853 -3.831 3.617 35.350 -2.725 -0.522 2.683 5.916 6.265 35.728 32 BB_G35A36:U4C5_BB B 35 ? B 5 ? B 36 ? B 4 ? 1 B A 36 1_555 B U 4 1_555 B C 37 1_555 B G 3 1_555 -0.200 -1.546 3.015 0.810 2.308 33.687 -2.999 0.463 2.900 3.976 -1.396 33.774 33 BB_A36C37:G3U4_BB B 36 ? B 4 ? B 37 ? B 3 ? 1 B C 37 1_555 B G 3 1_555 B C 38 1_555 B G 2 1_555 -0.091 -1.522 3.215 -1.018 8.047 33.031 -3.800 0.004 2.779 13.893 1.758 33.986 34 BB_C37C38:G2G3_BB B 37 ? B 3 ? B 38 ? B 2 ? 1 B C 38 1_555 B G 2 1_555 B C 39 1_555 B G 1 1_555 0.228 -1.313 3.230 0.551 4.788 40.117 -2.422 -0.270 3.063 6.950 -0.800 40.394 35 BB_C38C39:G1G2_BB B 38 ? B 2 ? B 39 ? B 1 ? #