HEADER STRUCTURAL PROTEIN 26-AUG-05 2D1K TITLE TERNARY COMPLEX OF THE WH2 DOMAIN OF MIM WITH ACTIN-DNASE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEOXYRIBONUCLEASE-1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: DEOXYRIBONUCLEASE I, DNASE I; COMPND 9 EC: 3.1.21.1; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: METASTASIS SUPPRESSOR PROTEIN 1; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: WH2 DOMAIN (RESIDUES 724-755); COMPND 14 SYNONYM: MIM, MISSING IN METASTASIS PROTEIN, METASTASIS SUPPRESSOR COMPND 15 YGL-1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 TISSUE: PANCREAS; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE. THIS SEQUENCE OCCURS NATURALLY IN SOURCE 14 HOMO SAPIENS (HUMANS) KEYWDS WASP, WIP, WH2, ACTIN, DNASE I, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CHEREAU,F.KERFF,R.DOMINGUEZ REVDAT 6 25-OCT-23 2D1K 1 HETSYN REVDAT 5 29-JUL-20 2D1K 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2D1K 1 VERSN REVDAT 3 24-FEB-09 2D1K 1 VERSN REVDAT 2 15-MAY-07 2D1K 1 JRNL REVDAT 1 12-SEP-06 2D1K 0 JRNL AUTH S.H.LEE,F.KERFF,D.CHEREAU,F.FERRON,A.KLUG,R.DOMINGUEZ JRNL TITL STRUCTURAL BASIS FOR THE ACTIN-BINDING FUNCTION OF JRNL TITL 2 MISSING-IN-METASTASIS JRNL REF STRUCTURE V. 15 145 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17292833 JRNL DOI 10.1016/J.STR.2006.12.005 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 22339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.383 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5366 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7296 ; 1.388 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 659 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;40.120 ;23.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 896 ;19.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 827 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4017 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2489 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3634 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 233 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.256 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3357 ; 2.132 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5333 ; 3.172 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2263 ; 2.099 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1962 ; 2.836 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 33 REMARK 3 RESIDUE RANGE : A 70 A 137 REMARK 3 RESIDUE RANGE : A 339 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9450 6.3468 81.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: -0.1732 REMARK 3 T33: -0.1243 T12: -0.1131 REMARK 3 T13: -0.0728 T23: -0.1600 REMARK 3 L TENSOR REMARK 3 L11: 3.5528 L22: 7.2027 REMARK 3 L33: 3.9303 L12: 0.3360 REMARK 3 L13: 0.7925 L23: -0.4681 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: 0.1878 S13: -0.4053 REMARK 3 S21: -0.4154 S22: 0.1859 S23: 0.3817 REMARK 3 S31: 0.4764 S32: -0.0811 S33: -0.0879 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4016 21.1429 93.0696 REMARK 3 T TENSOR REMARK 3 T11: -0.0456 T22: -0.0559 REMARK 3 T33: 0.0349 T12: -0.0831 REMARK 3 T13: 0.0064 T23: -0.1705 REMARK 3 L TENSOR REMARK 3 L11: 2.6343 L22: 3.1625 REMARK 3 L33: 2.7629 L12: 0.6952 REMARK 3 L13: 1.5200 L23: 2.7714 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.5119 S13: -0.4039 REMARK 3 S21: 0.2445 S22: 0.2942 S23: -0.3050 REMARK 3 S31: 0.3006 S32: -0.1682 S33: -0.2803 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 181 REMARK 3 RESIDUE RANGE : A 274 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2392 18.8320 59.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.3366 T22: -0.0003 REMARK 3 T33: -0.3343 T12: -0.0496 REMARK 3 T13: -0.1575 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 2.6516 L22: 3.4349 REMARK 3 L33: 4.3774 L12: -0.7170 REMARK 3 L13: 0.2962 L23: -0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.2664 S12: 0.5272 S13: -0.0088 REMARK 3 S21: -0.3319 S22: -0.2034 S23: 0.4308 REMARK 3 S31: -0.0104 S32: -0.1248 S33: -0.0630 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4164 38.1518 67.7813 REMARK 3 T TENSOR REMARK 3 T11: 0.5035 T22: 0.0074 REMARK 3 T33: -0.4080 T12: -0.0585 REMARK 3 T13: -0.0613 T23: 0.0958 REMARK 3 L TENSOR REMARK 3 L11: 3.8999 L22: 6.3156 REMARK 3 L33: 0.9456 L12: 0.8967 REMARK 3 L13: 0.6357 L23: 0.9229 REMARK 3 S TENSOR REMARK 3 S11: 0.2550 S12: 0.1437 S13: 0.3602 REMARK 3 S21: -0.0454 S22: -0.3220 S23: -0.6203 REMARK 3 S31: -0.0876 S32: 0.2465 S33: 0.0670 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7976 38.6182 108.6423 REMARK 3 T TENSOR REMARK 3 T11: -0.2140 T22: -0.1051 REMARK 3 T33: -0.0232 T12: -0.0075 REMARK 3 T13: -0.0307 T23: -0.0915 REMARK 3 L TENSOR REMARK 3 L11: 1.7736 L22: 2.0387 REMARK 3 L33: 2.0562 L12: -0.1348 REMARK 3 L13: -0.1551 L23: 0.7597 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0924 S13: -0.1281 REMARK 3 S21: 0.0201 S22: 0.0876 S23: -0.0580 REMARK 3 S31: 0.0981 S32: 0.0499 S33: -0.0687 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 725 C 753 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0904 14.7828 75.6569 REMARK 3 T TENSOR REMARK 3 T11: -0.0286 T22: -0.0395 REMARK 3 T33: -0.0268 T12: -0.0829 REMARK 3 T13: -0.0669 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 17.1877 L22: 2.1280 REMARK 3 L33: 5.6984 L12: -1.4614 REMARK 3 L13: -2.7970 L23: -3.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.8887 S12: 0.3520 S13: 1.8765 REMARK 3 S21: 0.8954 S22: -1.3237 S23: 2.0588 REMARK 3 S31: 0.6906 S32: -0.0612 S33: 0.4351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2D1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000024873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2A41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PEG3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.04650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.49550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.74350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.49550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.04650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.74350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 375 REMARK 465 ASP C 724 REMARK 465 PHE C 754 REMARK 465 SER C 755 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 54 O HOH B 1294 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 68.67 133.54 REMARK 500 ARG A 62 -54.73 -27.14 REMARK 500 ALA A 181 -158.38 -162.91 REMARK 500 SER A 232 -74.62 -99.80 REMARK 500 SER A 235 44.32 -149.36 REMARK 500 ASP A 244 30.18 -94.58 REMARK 500 MET A 283 41.63 -80.75 REMARK 500 THR A 318 -39.94 -38.46 REMARK 500 SER A 350 -16.78 -46.86 REMARK 500 GLN A 353 -29.37 -38.17 REMARK 500 ALA A 365 -71.87 -91.57 REMARK 500 THR B 10 60.62 30.33 REMARK 500 ARG B 30 -9.27 -55.49 REMARK 500 ARG B 30 -9.56 -55.18 REMARK 500 ARG B 41 78.63 -103.95 REMARK 500 ASP B 58 -87.90 -100.11 REMARK 500 ASN B 74 -132.94 -96.49 REMARK 500 ASP B 99 11.83 58.46 REMARK 500 CYS B 101 178.09 171.60 REMARK 500 SER B 103 42.81 -107.32 REMARK 500 SER B 108 -11.08 -147.19 REMARK 500 ASP B 139 31.00 -140.05 REMARK 500 ALA B 171 42.28 -94.62 REMARK 500 CYS B 173 -129.31 54.07 REMARK 500 ALA B 210 55.09 -92.12 REMARK 500 ALA B 231 155.39 172.72 REMARK 500 SER B 250 170.37 178.78 REMARK 500 GLN C 727 73.55 50.81 REMARK 500 ARG C 749 56.87 -111.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1381 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1380 O2G REMARK 620 2 ATP A1380 O3G 50.3 REMARK 620 3 ATP A1380 O1B 63.6 82.1 REMARK 620 4 HOH A1385 O 137.0 152.5 82.2 REMARK 620 5 HOH A1386 O 87.7 132.5 99.4 72.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1274 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 172 OD2 REMARK 620 2 ASP B 198 O 90.2 REMARK 620 3 HOH B1276 O 77.2 86.0 REMARK 620 4 HOH B1289 O 155.1 108.5 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1273 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD1 REMARK 620 2 ASP B 201 OD2 50.2 REMARK 620 3 THR B 203 OG1 74.2 121.4 REMARK 620 4 THR B 203 O 85.8 93.8 61.5 REMARK 620 5 THR B 205 O 159.6 150.3 86.6 91.4 REMARK 620 6 THR B 207 O 77.5 114.0 61.2 122.6 87.1 REMARK 620 7 HOH B1277 O 113.6 70.1 130.8 70.5 84.2 164.5 REMARK 620 8 HOH B1281 O 114.5 86.9 139.0 152.9 75.6 81.0 84.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A3Z RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF THE WH2 DOMAIN OF WASP WITH ACTIN-DNASE I REMARK 900 RELATED ID: 2A40 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF THE WH2 DOMAIN OF WAVE WITH ACTIN-DNASE I REMARK 900 RELATED ID: 2A41 RELATED DB: PDB REMARK 900 THE TERNARY COMPLEX OF THE WH2 DOMAIN OF WIP WITH ACTIN-DNASE I REMARK 900 RELATED ID: 2A42 RELATED DB: PDB REMARK 900 THE ACTIN DNASE I COMPLEX REMARK 900 RELATED ID: 2D1L RELATED DB: PDB REMARK 900 F-ACTIN BINDING DOMAIN IMD OF MIM DBREF 2D1K A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 2D1K B 1 260 UNP P00639 DNAS1_BOVIN 23 282 DBREF 2D1K C 724 755 UNP O43312 MTSS1_HUMAN 724 755 SEQADV 2D1K HIC A 73 UNP P68135 HIS 75 MODIFIED RESIDUE SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 B 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 B 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 B 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 B 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 B 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 B 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 B 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 B 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 B 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 B 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 B 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 B 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 B 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 B 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 B 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 B 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 B 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 B 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 B 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 B 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR SEQRES 1 C 32 ASP THR PRO GLN GLY GLU ASP MET LEU ASN ALA ILE ARG SEQRES 2 C 32 ARG GLY VAL LYS LEU LYS LYS THR THR THR ASN ASP ARG SEQRES 3 C 32 SER ALA PRO ARG PHE SER MODRES 2D1K ASN B 18 ASN GLYCOSYLATION SITE MODRES 2D1K HIC A 73 HIS 4-METHYL-HISTIDINE HET HIC A 73 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET CA A1381 1 HET ATP A1380 31 HET CA B1273 1 HET MG B1274 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 8 MG MG 2+ FORMUL 9 HOH *103(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 ALA A 144 1 8 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 ARG A 196 1 16 HELIX 8 8 THR A 202 CYS A 217 1 16 HELIX 9 9 ASP A 222 SER A 232 1 11 HELIX 10 10 ASN A 252 THR A 260 1 9 HELIX 11 11 LEU A 261 PHE A 262 5 2 HELIX 12 12 GLN A 263 ILE A 267 5 5 HELIX 13 13 GLY A 273 MET A 283 1 11 HELIX 14 14 ILE A 289 ALA A 295 1 7 HELIX 15 15 GLY A 301 MET A 305 5 5 HELIX 16 16 GLY A 308 ALA A 321 1 14 HELIX 17 17 GLU A 334 LYS A 336 5 3 HELIX 18 18 TYR A 337 LEU A 349 1 13 HELIX 19 19 THR A 351 MET A 355 5 5 HELIX 20 20 THR A 358 ALA A 365 1 8 HELIX 21 21 SER A 368 CYS A 374 1 7 HELIX 22 22 GLY B 12 ASN B 18 1 7 HELIX 23 23 ASN B 18 ARG B 30 1 13 HELIX 24 24 LEU B 45 ASN B 56 1 12 HELIX 25 25 CYS B 104 SER B 108 5 5 HELIX 26 26 ALA B 136 SER B 138 5 3 HELIX 27 27 ASP B 139 HIS B 159 1 21 HELIX 28 28 ASP B 172 VAL B 176 5 5 HELIX 29 29 THR B 177 SER B 183 5 7 HELIX 30 30 ILE B 184 SER B 189 1 6 HELIX 31 31 GLY B 218 VAL B 225 1 8 HELIX 32 32 ASP B 234 GLY B 240 1 7 HELIX 33 33 SER B 242 SER B 250 1 9 HELIX 34 34 GLY C 728 GLY C 738 1 11 SHEET 1 A 6 MET A 132 ILE A 136 0 SHEET 2 A 6 THR A 103 GLU A 107 1 N LEU A 105 O TYR A 133 SHEET 3 A 6 LEU A 8 ASN A 12 1 N LEU A 8 O LEU A 104 SHEET 4 A 6 LEU A 16 PHE A 21 -1 O LYS A 18 N ASP A 11 SHEET 5 A 6 ALA A 29 PRO A 32 -1 O PHE A 31 N VAL A 17 SHEET 6 A 6 ASN C 747 ASP C 748 1 O ASN C 747 N VAL A 30 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 7 GLY A 42 MET A 44 0 SHEET 2 C 7 HIS B 64 VAL B 67 1 O TYR B 65 N VAL A 43 SHEET 3 C 7 ARG B 79 PHE B 84 -1 O PHE B 82 N VAL B 66 SHEET 4 C 7 ILE B 34 VAL B 40 -1 N ILE B 37 O LEU B 81 SHEET 5 C 7 LYS B 2 PHE B 11 1 N PHE B 6 O LEU B 36 SHEET 6 C 7 VAL B 255 THR B 258 -1 O VAL B 255 N ALA B 5 SHEET 7 C 7 ALA B 231 PRO B 232 -1 N ALA B 231 O GLU B 256 SHEET 1 D 2 ILE A 71 GLU A 72 0 SHEET 2 D 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 E 3 TYR A 169 ALA A 170 0 SHEET 2 E 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 3 MET A 176 LEU A 178 -1 O MET A 176 N ASN A 162 SHEET 1 F 5 TYR A 169 ALA A 170 0 SHEET 2 F 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 F 5 GLY A 150 SER A 155 -1 N ASP A 154 O HIS A 161 SHEET 4 F 5 ASN A 297 SER A 300 1 O VAL A 298 N ILE A 151 SHEET 5 F 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 G 2 LYS A 238 GLU A 241 0 SHEET 2 G 2 VAL A 247 ILE A 250 -1 O ILE A 250 N LYS A 238 SHEET 1 H 6 VAL B 89 GLN B 96 0 SHEET 2 H 6 ALA B 114 SER B 120 -1 O LYS B 117 N LEU B 92 SHEET 3 H 6 GLU B 127 ALA B 132 -1 O PHE B 128 N PHE B 118 SHEET 4 H 6 VAL B 163 ASP B 168 1 O MET B 164 N ALA B 129 SHEET 5 H 6 ASP B 212 ALA B 217 -1 O VAL B 215 N LEU B 165 SHEET 6 H 6 PHE B 192 TRP B 194 -1 N GLN B 193 O VAL B 216 SSBOND 1 CYS B 101 CYS B 104 1555 1555 2.03 SSBOND 2 CYS B 173 CYS B 209 1555 1555 2.06 LINK C GLU A 72 N HIC A 73 1555 1555 1.33 LINK C HIC A 73 N GLY A 74 1555 1555 1.32 LINK ND2 ASN B 18 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O2G ATP A1380 CA CA A1381 1555 1555 2.24 LINK O3G ATP A1380 CA CA A1381 1555 1555 3.26 LINK O1B ATP A1380 CA CA A1381 1555 1555 2.28 LINK CA CA A1381 O HOH A1385 1555 1555 2.01 LINK CA CA A1381 O HOH A1386 1555 1555 1.98 LINK OD2 ASP B 172 MG MG B1274 1555 1555 2.81 LINK O ASP B 198 MG MG B1274 1555 1555 2.21 LINK OD1 ASP B 201 CA CA B1273 1555 1555 2.33 LINK OD2 ASP B 201 CA CA B1273 1555 1555 2.74 LINK OG1 THR B 203 CA CA B1273 1555 1555 2.55 LINK O THR B 203 CA CA B1273 1555 1555 2.40 LINK O THR B 205 CA CA B1273 1555 1555 2.55 LINK O THR B 207 CA CA B1273 1555 1555 2.47 LINK CA CA B1273 O HOH B1277 1555 1555 2.24 LINK CA CA B1273 O HOH B1281 1555 1555 2.60 LINK MG MG B1274 O HOH B1276 1555 1555 2.40 LINK MG MG B1274 O HOH B1289 1555 1555 2.27 CISPEP 1 ASP A 25 ALA A 26 0 -27.29 CRYST1 42.093 75.487 228.991 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004367 0.00000