HEADER OXYGEN STORAGE/TRANSPORT 12-SEP-05 2D2M TITLE STRUCTURE OF AN EXTRACELLULAR GIANT HEMOGLOBIN OF THE TITLE 2 GUTLESS BEARD WORM OLIGOBRACHIA MASHIKOI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GIANT HEMOGLOBIN, A1(B) GLOBIN CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMOGLOBIN CHAIN A1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GIANT HEMOGLOBIN, A2(A5) GLOBIN CHAIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: HEMOGLOBIN CHAIN A2; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GIANT HEMOGLOBIN, B2(C) GLOBIN CHAIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: HEMOGLOBIN CHAIN B2; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: GIANT HEMOGLOBIN, B1(D) GLOBIN CHAIN; COMPND 15 CHAIN: D; COMPND 16 SYNONYM: HEMOGLOBIN CHAIN B1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLIGOBRACHIA MASHIKOI; SOURCE 3 ORGANISM_TAXID: 55676; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: OLIGOBRACHIA MASHIKOI; SOURCE 6 ORGANISM_TAXID: 55676; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: OLIGOBRACHIA MASHIKOI; SOURCE 9 ORGANISM_TAXID: 55676; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: OLIGOBRACHIA MASHIKOI; SOURCE 12 ORGANISM_TAXID: 55676 KEYWDS GIANT HEMOGLOBIN, SULFIDE BINDING, INVERTEBRATE, KEYWDS 2 POGONOPHORA, OLIGOBRACHIA MASHIKOI, OXYGEN KEYWDS 3 STORAGE/TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.NUMOTO,T.NAKAGAWA,A.KITA,Y.SASAYAMA,Y.FUKUMORI,K.MIKI REVDAT 2 24-FEB-09 2D2M 1 VERSN REVDAT 1 25-OCT-05 2D2M 0 JRNL AUTH N.NUMOTO,T.NAKAGAWA,A.KITA,Y.SASAYAMA,Y.FUKUMORI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURE OF AN EXTRACELLULAR GIANT HEMOGLOBIN OF JRNL TITL 2 THE GUTLESS BEARD WORM OLIGOBRACHIA MASHIKOI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 14521 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16204001 JRNL DOI 10.1073/PNAS.0501541102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.NUMOTO,T.NAKAGAWA,A.KITA,Y.SASAYAMA,Y.FUKUMORI, REMARK 1 AUTH 2 K.MIKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF EXTRACELLULAR GIANT REMARK 1 TITL 3 HEMOGLOBIN FROM POGONOPHORAN OLIGOBRACHIA MASHIKOI. REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1750 173 2005 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 15951254 REMARK 1 DOI 10.1016/J.BBAPAP.2005.05.009 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3307054.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 15426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1416 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 63 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : 2.26000 REMARK 3 B33 (A**2) : -4.52000 REMARK 3 B12 (A**2) : 4.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.71 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.64 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 11.270; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 17.490; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 17.980; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 24.190; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 69.76 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : HEM_XPLOR_PAR9.TXT REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : O2_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : HEM_XPLOR_TOP3.TXT REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : O2_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D2M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-05. REMARK 100 THE RCSB ID CODE IS RCSB024910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATER REMARK 200 OPTICS : RH-COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10000, TRIS-HCL, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.74900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.18670 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.27833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.74900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.18670 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.27833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.74900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.18670 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.27833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.74900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.18670 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.27833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.74900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.18670 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.27833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.74900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.18670 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.27833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.37340 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 184.55667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.37340 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 184.55667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.37340 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 184.55667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.37340 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 184.55667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.37340 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 184.55667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.37340 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 184.55667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 276.83500 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 276.83500 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 276.83500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 -62.39 -104.19 REMARK 500 ALA A 21 156.73 -40.18 REMARK 500 GLU A 22 -87.72 -69.54 REMARK 500 LEU A 35 -38.32 -37.99 REMARK 500 GLN A 39 76.68 -164.12 REMARK 500 VAL A 49 29.27 -64.35 REMARK 500 GLN A 124 -75.23 -45.82 REMARK 500 HIS A 125 -75.16 -42.98 REMARK 500 ALA A 126 -46.09 -29.43 REMARK 500 SER A 139 -62.20 -163.87 REMARK 500 CYS B 2 72.59 -68.53 REMARK 500 TYR B 18 91.37 -53.16 REMARK 500 ALA B 37 -71.79 -93.01 REMARK 500 ASP B 53 61.08 -111.60 REMARK 500 ILE B 54 -34.48 -28.55 REMARK 500 LEU B 77 -31.56 -39.29 REMARK 500 ALA B 102 16.78 -68.60 REMARK 500 ALA B 121 47.01 -73.55 REMARK 500 SER B 141 -74.36 -76.05 REMARK 500 ALA C 19 8.01 59.65 REMARK 500 ASP C 43 67.28 -176.07 REMARK 500 SER C 54 51.85 -62.46 REMARK 500 ASP C 59 23.11 -69.55 REMARK 500 LEU C 81 -16.02 -46.89 REMARK 500 ASP C 83 66.12 -117.55 REMARK 500 HIS C 93 -73.92 -54.10 REMARK 500 LEU C 94 -38.63 -35.73 REMARK 500 ALA C 100 2.18 -63.79 REMARK 500 VAL C 104 113.22 -20.26 REMARK 500 CYS D 2 96.10 -58.83 REMARK 500 CYS D 3 77.77 61.29 REMARK 500 PHE D 19 69.53 -118.27 REMARK 500 ASN D 20 -157.10 -88.42 REMARK 500 ALA D 22 -39.03 176.03 REMARK 500 SER D 26 -58.92 -153.28 REMARK 500 VAL D 45 152.10 -43.75 REMARK 500 SER D 48 37.77 -74.65 REMARK 500 ASP D 55 79.90 46.51 REMARK 500 ASN D 77 3.12 -59.83 REMARK 500 SER D 100 102.40 -58.09 REMARK 500 ALA D 125 119.88 -22.96 REMARK 500 ILE D 127 -11.74 -49.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 OXY A 201 O1 173.7 REMARK 620 3 OXY A 201 O2 166.2 14.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 OXY B1201 O2 174.5 REMARK 620 3 OXY B1201 O1 167.5 17.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 98 NE2 REMARK 620 2 OXY C2201 O2 169.9 REMARK 620 3 OXY C2201 O1 161.0 11.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 96 NE2 REMARK 620 2 OXY D3201 O1 177.5 REMARK 620 3 OXY D3201 O2 165.8 16.7 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 201 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 200 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY B 1201 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 200 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY C 2201 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 200 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY D 3201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D2N RELATED DB: PDB REMARK 900 THE SAME PROTEIN, HG DERIVATIVE DBREF 2D2M A 1 140 UNP Q7M419 GLBB_OLIMA 17 156 DBREF 2D2M B 1 142 UNP Q7M413 GLB5_OLIMA 17 158 DBREF 2D2M C 1 147 UNP Q7M418 GLBC_OLIMA 17 163 DBREF 2D2M D 1 145 UNP Q5KSB7 Q5KSB7_OLIMA 17 161 SEQRES 1 A 140 VAL CYS ASN ARG LEU GLU GLN ILE LEU VAL LYS THR GLN SEQRES 2 A 140 TRP ALA GLN SER TYR GLY GLU ALA GLU ASN ARG ALA ALA SEQRES 3 A 140 PHE SER ARG ASP LEU PHE SER GLU LEU PHE ASN ILE GLN SEQRES 4 A 140 GLY SER SER ARG ALA LEU PHE SER GLY VAL GLY VAL ASP SEQRES 5 A 140 ASP MET ASN SER ALA ALA PHE THR ALA HIS CYS LEU ARG SEQRES 6 A 140 VAL THR GLY ALA LEU ASN ARG LEU ILE SER GLN LEU ASP SEQRES 7 A 140 GLN GLN ALA THR ILE ASN ALA ASP LEU ALA HIS LEU ALA SEQRES 8 A 140 GLY GLN HIS ALA SER ARG ASN LEU ASP ALA SER ASN PHE SEQRES 9 A 140 ALA ALA MET GLY GLN ALA VAL MET SER VAL VAL PRO THR SEQRES 10 A 140 HIS LEU ASP CYS PHE ASN GLN HIS ALA TRP GLY GLU CYS SEQRES 11 A 140 TYR GLU ARG ILE ALA SER GLY ILE SER GLY SEQRES 1 B 142 ASP CYS THR SER LEU ASN ARG LEU LEU VAL LYS ARG GLN SEQRES 2 B 142 TRP ALA GLU ALA TYR GLY GLU GLY THR ASN ARG GLU LEU SEQRES 3 B 142 LEU GLY ASN ARG ILE TRP GLU ASP LEU PHE ALA ASN MET SEQRES 4 B 142 PRO ASP ALA ARG GLY LEU PHE SER ARG VAL ASN GLY ASN SEQRES 5 B 142 ASP ILE ASP SER SER GLU PHE GLN ALA HIS SER LEU ARG SEQRES 6 B 142 VAL LEU GLY GLY LEU ASP MET CYS VAL ALA SER LEU ASP SEQRES 7 B 142 ASP VAL PRO VAL LEU ASN ALA LEU LEU ALA ARG LEU ASN SEQRES 8 B 142 SER GLN HIS ASP SER ARG GLY ILE PRO ALA ALA GLY TYR SEQRES 9 B 142 PRO ALA PHE VAL ALA SER ALA ILE SER ALA VAL ARG ALA SEQRES 10 B 142 THR VAL GLY ALA ARG SER PHE ASP ASN ASP ALA TRP ASN SEQRES 11 B 142 SER CYS MET ASN GLN ILE VAL SER GLY ILE SER GLY SEQRES 1 C 147 SER SER CYS CYS SER SER GLU ASP ARG ALA ASN VAL MET SEQRES 2 C 147 HIS ASN TRP ASP ALA ALA TRP SER ALA ALA TYR SER ASP SEQRES 3 C 147 ARG ARG VAL ALA LEU ALA GLN ALA VAL PHE ALA SER LEU SEQRES 4 C 147 PHE SER ARG ASP ALA ALA ALA GLN GLY LEU PHE SER GLY SEQRES 5 C 147 VAL SER ALA ASP ASN PRO ASP SER ALA ASP PHE ARG ALA SEQRES 6 C 147 HIS CYS VAL ARG VAL VAL ASN GLY LEU ASP VAL ALA ILE SEQRES 7 C 147 ASN MET LEU ASN ASP PRO ALA VAL LEU ASN GLU GLN LEU SEQRES 8 C 147 ALA HIS LEU SER ALA GLN HIS GLN ALA ARG ALA GLY VAL SEQRES 9 C 147 ALA ALA ALA HIS PHE ASP VAL MET ALA GLU ALA PHE ALA SEQRES 10 C 147 GLU VAL MET PRO GLN VAL SER SER CYS PHE SER SER ASP SEQRES 11 C 147 SER TRP ASN ARG CYS PHE ALA ARG ILE ALA ASN GLY ILE SEQRES 12 C 147 SER ALA GLY LEU SEQRES 1 D 145 GLU CYS CYS SER ARG GLY ASP ALA GLU VAL VAL ILE SER SEQRES 2 D 145 GLU TRP ASP GLN VAL PHE ASN ALA ALA MET ALA GLY SER SEQRES 3 D 145 SER GLU SER ALA VAL GLY VAL ALA ILE PHE ASP ALA PHE SEQRES 4 D 145 PHE ALA SER SER GLY VAL SER PRO SER MET PHE PRO GLY SEQRES 5 D 145 GLY GLY ASP SER ASN ASN PRO GLU PHE LEU ALA GLN VAL SEQRES 6 D 145 SER ARG VAL VAL SER GLY ALA ASP ILE ALA ILE ASN SER SEQRES 7 D 145 LEU THR ASN ARG ALA THR CYS ASP SER LEU LEU SER HIS SEQRES 8 D 145 LEU ASN ALA GLN HIS ARG ALA ILE SER GLY VAL THR GLY SEQRES 9 D 145 ALA ALA VAL THR HIS LEU SER GLN ALA ILE SER SER VAL SEQRES 10 D 145 VAL ALA GLN VAL LEU PRO SER ALA HIS ILE ASP ALA TRP SEQRES 11 D 145 GLU TYR CYS MET ALA TYR ILE ALA ALA GLY ILE GLY ALA SEQRES 12 D 145 GLY LEU HET HEM A 200 43 HET OXY A 201 2 HET HEM B 200 43 HET OXY B1201 2 HET HEM C 200 43 HET OXY C2201 2 HET HEM D 200 43 HET OXY D3201 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 OXY 4(O2) FORMUL 13 HOH *13(H2 O) HELIX 1 1 ASN A 3 GLY A 19 1 17 HELIX 2 2 ASN A 23 ILE A 38 1 16 HELIX 3 3 GLN A 39 SER A 47 5 9 HELIX 4 4 SER A 56 SER A 75 1 20 HELIX 5 5 GLN A 79 HIS A 94 1 16 HELIX 6 6 ASP A 100 VAL A 115 1 16 HELIX 7 7 PRO A 116 LEU A 119 5 4 HELIX 8 8 ASN A 123 ILE A 138 1 16 HELIX 9 9 THR B 3 TYR B 18 1 16 HELIX 10 10 THR B 22 ASN B 38 1 17 HELIX 11 11 MET B 39 SER B 47 5 9 HELIX 12 12 SER B 56 LEU B 77 1 22 HELIX 13 13 ASP B 79 ASP B 95 1 17 HELIX 14 14 ALA B 102 GLY B 120 1 19 HELIX 15 15 ASP B 125 SER B 141 1 17 HELIX 16 16 SER C 5 ALA C 18 1 14 HELIX 17 17 TYR C 24 ARG C 42 1 19 HELIX 18 18 ASP C 43 GLY C 48 1 6 HELIX 19 19 LEU C 49 SER C 51 5 3 HELIX 20 20 SER C 60 ASN C 79 1 20 HELIX 21 21 ASP C 83 ALA C 100 1 18 HELIX 22 22 ALA C 107 MET C 120 1 14 HELIX 23 23 PRO C 121 VAL C 123 5 3 HELIX 24 24 SER C 128 ALA C 145 1 18 HELIX 25 25 SER D 4 PHE D 19 1 16 HELIX 26 26 SER D 27 GLY D 44 1 18 HELIX 27 27 ASN D 58 ASN D 77 1 20 HELIX 28 28 ASN D 81 ALA D 98 1 18 HELIX 29 29 THR D 103 LEU D 122 1 20 HELIX 30 30 HIS D 126 GLY D 142 1 17 SSBOND 1 CYS A 2 CYS A 130 1555 1555 2.03 SSBOND 2 CYS A 121 CYS C 126 1555 1555 2.02 SSBOND 3 CYS B 2 CYS B 132 1555 1555 2.03 SSBOND 4 CYS C 4 CYS C 135 1555 1555 2.04 SSBOND 5 CYS D 3 CYS D 133 1555 1555 2.03 LINK FE HEM A 200 NE2 HIS A 94 1555 1555 2.01 LINK FE HEM B 200 NE2 HIS B 94 1555 1555 2.00 LINK FE HEM C 200 NE2 HIS C 98 1555 1555 1.99 LINK FE HEM D 200 NE2 HIS D 96 1555 1555 2.02 LINK FE HEM A 200 O1 OXY A 201 1555 1555 1.80 LINK FE HEM A 200 O2 OXY A 201 1555 1555 2.90 LINK FE HEM B 200 O2 OXY B1201 1555 1555 2.84 LINK FE HEM B 200 O1 OXY B1201 1555 1555 1.80 LINK FE HEM C 200 O2 OXY C2201 1555 1555 2.95 LINK FE HEM C 200 O1 OXY C2201 1555 1555 1.80 LINK FE HEM D 200 O1 OXY D3201 1555 1555 1.80 LINK FE HEM D 200 O2 OXY D3201 1555 1555 2.85 SITE 1 AC1 18 LEU A 45 PHE A 46 VAL A 49 HIS A 62 SITE 2 AC1 18 ARG A 65 VAL A 66 ALA A 69 HIS A 94 SITE 3 AC1 18 ARG A 97 LEU A 99 ASN A 103 PHE A 104 SITE 4 AC1 18 MET A 107 TYR A 131 ILE A 138 OXY A 201 SITE 5 AC1 18 HIS D 91 GLN D 95 SITE 1 AC2 6 PHE A 32 PHE A 46 HIS A 62 VAL A 66 SITE 2 AC2 6 MET A 107 HEM A 200 SITE 1 AC3 17 LEU B 45 PHE B 46 ARG B 48 VAL B 49 SITE 2 AC3 17 HIS B 62 ARG B 65 LEU B 70 GLN B 93 SITE 3 AC3 17 HIS B 94 ARG B 97 ILE B 99 GLY B 103 SITE 4 AC3 17 TYR B 104 PHE B 107 OXY B1201 HIS C 93 SITE 5 AC3 17 GLN C 97 SITE 1 AC4 3 TRP B 32 VAL B 66 HEM B 200 SITE 1 AC5 17 ARG B 89 GLN B 93 LEU C 49 PHE C 50 SITE 2 AC5 17 VAL C 53 HIS C 66 ARG C 69 GLN C 97 SITE 3 AC5 17 HIS C 98 ARG C 101 VAL C 104 HIS C 108 SITE 4 AC5 17 PHE C 109 MET C 112 ILE C 143 HOH C1001 SITE 5 AC5 17 OXY C2201 SITE 1 AC6 5 PHE C 36 PHE C 50 HIS C 66 VAL C 70 SITE 2 AC6 5 HEM C 200 SITE 1 AC7 16 HIS A 89 GLN A 93 VAL D 45 MET D 49 SITE 2 AC7 16 PHE D 50 GLN D 64 ARG D 67 GLN D 95 SITE 3 AC7 16 HIS D 96 ILE D 99 VAL D 102 VAL D 107 SITE 4 AC7 16 LEU D 110 SER D 111 ILE D 141 OXY D3201 SITE 1 AC8 3 GLN D 64 VAL D 68 HEM D 200 CRYST1 111.498 111.498 276.835 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008969 0.005178 0.000000 0.00000 SCALE2 0.000000 0.010356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003612 0.00000