HEADER HYDROLASE 21-SEP-05 2D30 TITLE CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE CDD-2 (BA4525) FROM BACILLUS TITLE 2 ANTHRACIS AT 2.40A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDINE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.4.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: CDD-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS PURINES, PYRIMIDINES, NUCLEOSIDES, NUCLEOTIDES, SALVAGE OF KEYWDS 2 NUCLEOSIDES AND NUCLEOTIDES, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 PROTEOMICS IN EUROPE, SPINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN,O.V.MOROZ, AUTHOR 2 A.J.WILKINSON,K.S.WILSON,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 5 25-OCT-23 2D30 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2D30 1 VERSN REVDAT 3 24-FEB-09 2D30 1 VERSN REVDAT 2 26-SEP-06 2D30 1 REMARK REVDAT 1 19-SEP-06 2D30 0 JRNL AUTH V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN,O.V.MOROZ, JRNL AUTH 2 A.J.WILKINSON,K.S.WILSON JRNL TITL CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE CDD-2 (BA4525) FROM JRNL TITL 2 BACILLUS ANTHRACIS AT 2.40A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1560 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 2.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.556 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1906 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1746 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2576 ; 1.693 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4082 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;42.250 ;25.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;19.541 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.845 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2132 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 350 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 393 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1727 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 884 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1146 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 2.091 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 508 ; 0.257 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ; 2.822 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 5.075 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 604 ; 6.865 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2D30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000024924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87000 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : RH COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1JTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000 MME, CA_ACETATE, TRIS, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.89600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.27600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.89600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.27600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE A REMARK 300 AND B MOLECULES BY THE OPERATION: -X, Y, 1-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -47.22351 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.26329 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2017 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PHE A 125 REMARK 465 LEU A 126 REMARK 465 ALA A 127 REMARK 465 GLU A 128 REMARK 465 ASP A 129 REMARK 465 LEU A 130 REMARK 465 HIS A 131 REMARK 465 GLU A 132 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 PHE B 125 REMARK 465 LEU B 126 REMARK 465 ALA B 127 REMARK 465 GLU B 128 REMARK 465 ASP B 129 REMARK 465 LEU B 130 REMARK 465 HIS B 131 REMARK 465 GLU B 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 169.02 169.73 REMARK 500 ASN A 107 -168.59 -120.46 REMARK 500 THR A 115 -155.35 -145.53 REMARK 500 LYS B 23 18.08 58.27 REMARK 500 ASN B 107 -168.95 -119.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 53 SG REMARK 620 2 CYS A 86 SG 114.6 REMARK 620 3 CYS A 89 SG 103.6 120.8 REMARK 620 4 HOH A2018 O 111.4 101.7 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 53 SG REMARK 620 2 CYS B 86 SG 112.4 REMARK 620 3 CYS B 89 SG 96.7 119.0 REMARK 620 4 HOH B1037 O 105.7 102.6 119.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: OPTIC1463 RELATED DB: TARGETDB REMARK 900 YPLATE_1H6, THIS IS AN INDIVIDUAL ID FOR SPINE PARTNER. DBREF 2D30 A 1 132 UNP Q81LT6 Q81LT6_BACAN 1 132 DBREF 2D30 B 1 132 UNP Q81LT6 Q81LT6_BACAN 1 132 SEQADV 2D30 GLY A -8 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 SER A -7 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 SER A -6 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A -5 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A -4 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A -3 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A -2 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A -1 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS A 0 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 GLY B -8 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 SER B -7 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 SER B -6 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B -5 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B -4 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B -3 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B -2 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B -1 UNP Q81LT6 CLONING ARTIFACT SEQADV 2D30 HIS B 0 UNP Q81LT6 CLONING ARTIFACT SEQRES 1 A 141 GLY SER SER HIS HIS HIS HIS HIS HIS MET ASN SER LYS SEQRES 2 A 141 GLN LEU ILE GLN GLU ALA ILE GLU ALA ARG LYS GLN ALA SEQRES 3 A 141 TYR VAL PRO TYR SER LYS PHE GLN VAL GLY ALA ALA LEU SEQRES 4 A 141 LEU THR GLN ASP GLY LYS VAL TYR ARG GLY CYS ASN VAL SEQRES 5 A 141 GLU ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG SEQRES 6 A 141 THR ALA LEU PHE LYS ALA VAL SER GLU GLY ASP LYS GLU SEQRES 7 A 141 PHE VAL ALA ILE ALA ILE VAL ALA ASP THR LYS ARG PRO SEQRES 8 A 141 VAL PRO PRO CYS GLY ALA CYS ARG GLN VAL MET VAL GLU SEQRES 9 A 141 LEU CYS LYS GLN ASP THR LYS VAL TYR LEU SER ASN LEU SEQRES 10 A 141 HIS GLY ASP VAL GLN GLU THR THR VAL GLY GLU LEU LEU SEQRES 11 A 141 PRO GLY ALA PHE LEU ALA GLU ASP LEU HIS GLU SEQRES 1 B 141 GLY SER SER HIS HIS HIS HIS HIS HIS MET ASN SER LYS SEQRES 2 B 141 GLN LEU ILE GLN GLU ALA ILE GLU ALA ARG LYS GLN ALA SEQRES 3 B 141 TYR VAL PRO TYR SER LYS PHE GLN VAL GLY ALA ALA LEU SEQRES 4 B 141 LEU THR GLN ASP GLY LYS VAL TYR ARG GLY CYS ASN VAL SEQRES 5 B 141 GLU ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG SEQRES 6 B 141 THR ALA LEU PHE LYS ALA VAL SER GLU GLY ASP LYS GLU SEQRES 7 B 141 PHE VAL ALA ILE ALA ILE VAL ALA ASP THR LYS ARG PRO SEQRES 8 B 141 VAL PRO PRO CYS GLY ALA CYS ARG GLN VAL MET VAL GLU SEQRES 9 B 141 LEU CYS LYS GLN ASP THR LYS VAL TYR LEU SER ASN LEU SEQRES 10 B 141 HIS GLY ASP VAL GLN GLU THR THR VAL GLY GLU LEU LEU SEQRES 11 B 141 PRO GLY ALA PHE LEU ALA GLU ASP LEU HIS GLU HET ZN A2001 1 HET ZN B1001 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *135(H2 O) HELIX 1 1 ASN A 2 LYS A 15 1 14 HELIX 2 2 SER A 47 CYS A 51 5 5 HELIX 3 3 CYS A 53 GLU A 65 1 13 HELIX 4 4 CYS A 86 CYS A 97 1 12 HELIX 5 5 VAL A 117 LEU A 121 1 5 HELIX 6 6 ASN B 2 LYS B 15 1 14 HELIX 7 7 SER B 47 CYS B 51 5 5 HELIX 8 8 CYS B 53 GLU B 65 1 13 HELIX 9 9 CYS B 86 CYS B 97 1 12 HELIX 10 10 VAL B 117 LEU B 121 1 5 SHEET 1 A 5 VAL A 37 CYS A 41 0 SHEET 2 A 5 VAL A 26 THR A 32 -1 N LEU A 30 O TYR A 38 SHEET 3 A 5 PHE A 70 ALA A 77 -1 O ALA A 72 N LEU A 31 SHEET 4 A 5 LYS A 102 SER A 106 1 O SER A 106 N ILE A 75 SHEET 5 A 5 VAL A 112 THR A 116 -1 O GLN A 113 N LEU A 105 SHEET 1 B 5 VAL B 37 CYS B 41 0 SHEET 2 B 5 GLY B 27 THR B 32 -1 N LEU B 30 O TYR B 38 SHEET 3 B 5 PHE B 70 VAL B 76 -1 O ALA B 72 N LEU B 31 SHEET 4 B 5 LYS B 102 SER B 106 1 O TYR B 104 N ILE B 75 SHEET 5 B 5 VAL B 112 THR B 116 -1 O GLN B 113 N LEU B 105 LINK SG CYS A 53 ZN ZN A2001 1555 1555 2.50 LINK SG CYS A 86 ZN ZN A2001 1555 1555 2.47 LINK SG CYS A 89 ZN ZN A2001 1555 1555 2.35 LINK ZN ZN A2001 O HOH A2018 1555 1555 2.31 LINK SG CYS B 53 ZN ZN B1001 1555 1555 2.52 LINK SG CYS B 86 ZN ZN B1001 1555 1555 2.52 LINK SG CYS B 89 ZN ZN B1001 1555 1555 2.40 LINK ZN ZN B1001 O HOH B1037 1555 1555 2.29 SITE 1 AC1 4 CYS B 53 CYS B 86 CYS B 89 HOH B1037 SITE 1 AC2 4 CYS A 53 CYS A 86 CYS A 89 HOH A2018 CRYST1 99.792 50.552 70.438 90.00 132.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010021 0.000000 0.009055 0.00000 SCALE2 0.000000 0.019782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019135 0.00000