data_2D37 # _entry.id 2D37 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D37 RCSB RCSB024930 WWPDB D_1000024930 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D36 'The same protein' unspecified PDB 2D38 'The same protein complexed with NADP+' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D37 _pdbx_database_status.recvd_initial_deposition_date 2005-09-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Okai, M.' 1 'Kudo, N.' 2 'Lee, W.C.' 3 'Kamo, M.' 4 'Nagata, K.' 5 'Tanokura, M.' 6 # _citation.id primary _citation.title ;Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound ; _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 5103 _citation.page_last 5110 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16618099 _citation.pdbx_database_id_DOI 10.1021/bi052313i # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Okai, M.' 1 primary 'Kudo, N.' 2 primary 'Lee, W.C.' 3 primary 'Kamo, M.' 4 primary 'Nagata, K.' 5 primary 'Tanokura, M.' 6 # _cell.entry_id 2D37 _cell.length_a 86.449 _cell.length_b 86.449 _cell.length_c 49.029 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D37 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical NADH-dependent FMN oxidoreductase' 20157.137 1 1.6.8.- ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NADH:flavin reductase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYK ESKYFVVNFTDNEELFNIFALKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNF TPLVYMNRKYYKLSSL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYK ESKYFVVNFTDNEELFNIFALKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNF TPLVYMNRKYYKLSSL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 GLU n 1 24 VAL n 1 25 ILE n 1 26 LYS n 1 27 SER n 1 28 ILE n 1 29 MET n 1 30 ARG n 1 31 LYS n 1 32 PHE n 1 33 PRO n 1 34 LEU n 1 35 GLY n 1 36 VAL n 1 37 ALA n 1 38 ILE n 1 39 VAL n 1 40 THR n 1 41 THR n 1 42 ASN n 1 43 TRP n 1 44 LYS n 1 45 GLY n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 GLY n 1 50 MET n 1 51 THR n 1 52 VAL n 1 53 ASN n 1 54 THR n 1 55 PHE n 1 56 ASN n 1 57 SER n 1 58 LEU n 1 59 SER n 1 60 LEU n 1 61 ASN n 1 62 PRO n 1 63 PRO n 1 64 LEU n 1 65 VAL n 1 66 SER n 1 67 PHE n 1 68 PHE n 1 69 ALA n 1 70 ASP n 1 71 ARG n 1 72 MET n 1 73 LYS n 1 74 GLY n 1 75 ASN n 1 76 ASP n 1 77 ILE n 1 78 PRO n 1 79 TYR n 1 80 LYS n 1 81 GLU n 1 82 SER n 1 83 LYS n 1 84 TYR n 1 85 PHE n 1 86 VAL n 1 87 VAL n 1 88 ASN n 1 89 PHE n 1 90 THR n 1 91 ASP n 1 92 ASN n 1 93 GLU n 1 94 GLU n 1 95 LEU n 1 96 PHE n 1 97 ASN n 1 98 ILE n 1 99 PHE n 1 100 ALA n 1 101 LEU n 1 102 LYS n 1 103 PRO n 1 104 VAL n 1 105 LYS n 1 106 GLU n 1 107 ARG n 1 108 PHE n 1 109 ARG n 1 110 GLU n 1 111 ILE n 1 112 LYS n 1 113 TYR n 1 114 LYS n 1 115 GLU n 1 116 GLY n 1 117 ILE n 1 118 GLY n 1 119 GLY n 1 120 CYS n 1 121 PRO n 1 122 ILE n 1 123 LEU n 1 124 TYR n 1 125 ASP n 1 126 SER n 1 127 TYR n 1 128 ALA n 1 129 TYR n 1 130 ILE n 1 131 GLU n 1 132 ALA n 1 133 LYS n 1 134 LEU n 1 135 TYR n 1 136 ASP n 1 137 THR n 1 138 ILE n 1 139 ASP n 1 140 VAL n 1 141 GLY n 1 142 ASP n 1 143 HIS n 1 144 SER n 1 145 ILE n 1 146 ILE n 1 147 VAL n 1 148 GLY n 1 149 GLU n 1 150 VAL n 1 151 ILE n 1 152 ASP n 1 153 GLY n 1 154 TYR n 1 155 GLN n 1 156 ILE n 1 157 ARG n 1 158 ASP n 1 159 ASN n 1 160 PHE n 1 161 THR n 1 162 PRO n 1 163 LEU n 1 164 VAL n 1 165 TYR n 1 166 MET n 1 167 ASN n 1 168 ARG n 1 169 LYS n 1 170 TYR n 1 171 TYR n 1 172 LYS n 1 173 LEU n 1 174 SER n 1 175 SER n 1 176 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Sulfolobus tokodaii' _entity_src_gen.gene_src_strain 'str. 7' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus tokodaii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273063 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_376622 _struct_ref.pdbx_db_accession 15920953 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYKESKYFVVNFTDNEELFNIFA LKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNFTPLVYMNRKYYKLSSL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D37 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 176 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 15920953 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 156 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D37 MET A 1 ? GB 15920953 ? ? 'CLONING ARTIFACT' -19 1 1 2D37 GLY A 2 ? GB 15920953 ? ? 'CLONING ARTIFACT' -18 2 1 2D37 SER A 3 ? GB 15920953 ? ? 'CLONING ARTIFACT' -17 3 1 2D37 SER A 4 ? GB 15920953 ? ? 'CLONING ARTIFACT' -16 4 1 2D37 HIS A 5 ? GB 15920953 ? ? 'CLONING ARTIFACT' -15 5 1 2D37 HIS A 6 ? GB 15920953 ? ? 'CLONING ARTIFACT' -14 6 1 2D37 HIS A 7 ? GB 15920953 ? ? 'CLONING ARTIFACT' -13 7 1 2D37 HIS A 8 ? GB 15920953 ? ? 'CLONING ARTIFACT' -12 8 1 2D37 HIS A 9 ? GB 15920953 ? ? 'CLONING ARTIFACT' -11 9 1 2D37 HIS A 10 ? GB 15920953 ? ? 'CLONING ARTIFACT' -10 10 1 2D37 SER A 11 ? GB 15920953 ? ? 'CLONING ARTIFACT' -9 11 1 2D37 SER A 12 ? GB 15920953 ? ? 'CLONING ARTIFACT' -8 12 1 2D37 GLY A 13 ? GB 15920953 ? ? 'CLONING ARTIFACT' -7 13 1 2D37 LEU A 14 ? GB 15920953 ? ? 'CLONING ARTIFACT' -6 14 1 2D37 VAL A 15 ? GB 15920953 ? ? 'CLONING ARTIFACT' -5 15 1 2D37 PRO A 16 ? GB 15920953 ? ? 'CLONING ARTIFACT' -4 16 1 2D37 ARG A 17 ? GB 15920953 ? ? 'CLONING ARTIFACT' -3 17 1 2D37 GLY A 18 ? GB 15920953 ? ? 'CLONING ARTIFACT' -2 18 1 2D37 SER A 19 ? GB 15920953 ? ? 'CLONING ARTIFACT' -1 19 1 2D37 HIS A 20 ? GB 15920953 ? ? 'CLONING ARTIFACT' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D37 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 57.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, iso-propanol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-11-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2D37 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 50.00 _reflns.number_all ? _reflns.number_obs 23559 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2D37 _refine.ls_number_reflns_obs 22306 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.17956 _refine.ls_R_factor_all 0.179 _refine.ls_R_factor_R_work 0.17857 _refine.ls_R_factor_R_free 0.19972 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1201 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 20.233 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.02 _refine.aniso_B[1][2] -0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.090 _refine.pdbx_overall_ESU_R_Free 0.087 _refine.overall_SU_ML 0.051 _refine.overall_SU_B 1.496 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1259 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 75 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 1418 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1370 'X-RAY DIFFRACTION' ? r_bond_other_d 0.010 0.020 ? 1209 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.657 2.030 ? 1865 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.218 3.000 ? 2819 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.353 5.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1446 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.007 0.020 ? 281 'X-RAY DIFFRACTION' ? r_nbd_refined 0.212 0.200 ? 215 'X-RAY DIFFRACTION' ? r_nbd_other 0.250 0.200 ? 1336 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.083 0.200 ? 773 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.151 0.200 ? 61 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.153 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.259 0.200 ? 69 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.143 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.935 1.500 ? 771 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.651 2.000 ? 1256 'X-RAY DIFFRACTION' ? r_scbond_it 2.333 3.000 ? 599 'X-RAY DIFFRACTION' ? r_scangle_it 3.554 4.500 ? 609 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 1629 _refine_ls_shell.R_factor_R_work 0.185 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.208 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 105 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2D37 _struct.title 'The Crystal Structure of Flavin Reductase HpaC complexed with NAD+' _struct.pdbx_descriptor 'hypothetical NADH-dependent FMN oxidoreductase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D37 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'flavin reductase, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 21 ? ARG A 30 ? MET A 1 ARG A 10 1 ? 10 HELX_P HELX_P2 2 MET A 72 ? GLY A 74 ? MET A 52 GLY A 54 5 ? 3 HELX_P HELX_P3 3 ASP A 76 ? GLU A 81 ? ASP A 56 GLU A 61 1 ? 6 HELX_P HELX_P4 4 ASN A 92 ? LYS A 102 ? ASN A 72 LYS A 82 1 ? 11 HELX_P HELX_P5 5 PRO A 103 ? GLU A 110 ? PRO A 83 GLU A 90 5 ? 8 HELX_P HELX_P6 6 ILE A 117 ? GLY A 119 ? ILE A 97 GLY A 99 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 61 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 41 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 62 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 42 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 34 ? GLY A 35 ? LEU A 14 GLY A 15 A 2 VAL A 164 ? MET A 166 ? VAL A 144 MET A 146 A 3 LYS A 169 ? TYR A 171 ? LYS A 149 TYR A 151 B 1 GLU A 46 ? VAL A 52 ? GLU A 26 VAL A 32 B 2 ALA A 37 ? TRP A 43 ? ALA A 17 TRP A 23 B 3 TYR A 84 ? THR A 90 ? TYR A 64 THR A 70 B 4 SER A 126 ? VAL A 140 ? SER A 106 VAL A 120 B 5 HIS A 143 ? GLN A 155 ? HIS A 123 GLN A 135 B 6 LEU A 64 ? ASP A 70 ? LEU A 44 ASP A 50 B 7 ASN A 56 ? SER A 59 ? ASN A 36 SER A 39 C 1 TYR A 113 ? GLU A 115 ? TYR A 93 GLU A 95 C 2 PRO A 121 ? LEU A 123 ? PRO A 101 LEU A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 34 ? N LEU A 14 O TYR A 165 ? O TYR A 145 A 2 3 N VAL A 164 ? N VAL A 144 O TYR A 171 ? O TYR A 151 B 1 2 O GLU A 46 ? O GLU A 26 N TRP A 43 ? N TRP A 23 B 2 3 N THR A 40 ? N THR A 20 O VAL A 86 ? O VAL A 66 B 3 4 N PHE A 85 ? N PHE A 65 O ALA A 132 ? O ALA A 112 B 4 5 N LYS A 133 ? N LYS A 113 O GLU A 149 ? O GLU A 129 B 5 6 O ILE A 146 ? O ILE A 126 N PHE A 67 ? N PHE A 47 B 6 7 O SER A 66 ? O SER A 46 N ASN A 56 ? N ASN A 36 C 1 2 N LYS A 114 ? N LYS A 94 O ILE A 122 ? O ILE A 102 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE FMN A 200' AC2 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE NAD A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 MET A 50 ? MET A 30 . ? 1_555 ? 2 AC1 19 THR A 51 ? THR A 31 . ? 1_555 ? 3 AC1 19 VAL A 52 ? VAL A 32 . ? 1_555 ? 4 AC1 19 ASN A 53 ? ASN A 33 . ? 1_555 ? 5 AC1 19 THR A 54 ? THR A 34 . ? 1_555 ? 6 AC1 19 PHE A 68 ? PHE A 48 . ? 1_555 ? 7 AC1 19 ALA A 69 ? ALA A 49 . ? 1_555 ? 8 AC1 19 ASP A 70 ? ASP A 50 . ? 1_555 ? 9 AC1 19 LYS A 73 ? LYS A 53 . ? 1_555 ? 10 AC1 19 ASN A 75 ? ASN A 55 . ? 1_555 ? 11 AC1 19 PHE A 99 ? PHE A 79 . ? 1_555 ? 12 AC1 19 ALA A 100 ? ALA A 80 . ? 1_555 ? 13 AC1 19 ARG A 107 ? ARG A 87 . ? 1_555 ? 14 AC1 19 ARG A 109 ? ARG A 89 . ? 3_564 ? 15 AC1 19 TYR A 165 ? TYR A 145 . ? 1_555 ? 16 AC1 19 TYR A 170 ? TYR A 150 . ? 1_555 ? 17 AC1 19 NAD C . ? NAD A 300 . ? 1_555 ? 18 AC1 19 HOH D . ? HOH A 353 . ? 3_564 ? 19 AC1 19 HOH D . ? HOH A 366 . ? 1_555 ? 20 AC2 20 LYS A 26 ? LYS A 6 . ? 1_555 ? 21 AC2 20 MET A 29 ? MET A 9 . ? 1_555 ? 22 AC2 20 ARG A 30 ? ARG A 10 . ? 1_555 ? 23 AC2 20 ASN A 53 ? ASN A 33 . ? 1_555 ? 24 AC2 20 THR A 54 ? THR A 34 . ? 1_555 ? 25 AC2 20 SER A 57 ? SER A 37 . ? 5_675 ? 26 AC2 20 LEU A 60 ? LEU A 40 . ? 5_675 ? 27 AC2 20 LYS A 73 ? LYS A 53 . ? 1_555 ? 28 AC2 20 HIS A 143 ? HIS A 123 . ? 1_555 ? 29 AC2 20 TYR A 165 ? TYR A 145 . ? 1_555 ? 30 AC2 20 ARG A 168 ? ARG A 148 . ? 1_555 ? 31 AC2 20 FMN B . ? FMN A 200 . ? 1_555 ? 32 AC2 20 HOH D . ? HOH A 302 . ? 1_555 ? 33 AC2 20 HOH D . ? HOH A 305 . ? 5_675 ? 34 AC2 20 HOH D . ? HOH A 309 . ? 1_555 ? 35 AC2 20 HOH D . ? HOH A 315 . ? 5_675 ? 36 AC2 20 HOH D . ? HOH A 346 . ? 3_564 ? 37 AC2 20 HOH D . ? HOH A 381 . ? 1_555 ? 38 AC2 20 HOH D . ? HOH A 382 . ? 1_555 ? 39 AC2 20 HOH D . ? HOH A 383 . ? 1_555 ? # _database_PDB_matrix.entry_id 2D37 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D37 _atom_sites.fract_transf_matrix[1][1] 0.011568 _atom_sites.fract_transf_matrix[1][2] 0.006679 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013357 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020396 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 1 MET MET A . n A 1 22 ALA 22 2 2 ALA ALA A . n A 1 23 GLU 23 3 3 GLU GLU A . n A 1 24 VAL 24 4 4 VAL VAL A . n A 1 25 ILE 25 5 5 ILE ILE A . n A 1 26 LYS 26 6 6 LYS LYS A . n A 1 27 SER 27 7 7 SER SER A . n A 1 28 ILE 28 8 8 ILE ILE A . n A 1 29 MET 29 9 9 MET MET A . n A 1 30 ARG 30 10 10 ARG ARG A . n A 1 31 LYS 31 11 11 LYS LYS A . n A 1 32 PHE 32 12 12 PHE PHE A . n A 1 33 PRO 33 13 13 PRO PRO A . n A 1 34 LEU 34 14 14 LEU LEU A . n A 1 35 GLY 35 15 15 GLY GLY A . n A 1 36 VAL 36 16 16 VAL VAL A . n A 1 37 ALA 37 17 17 ALA ALA A . n A 1 38 ILE 38 18 18 ILE ILE A . n A 1 39 VAL 39 19 19 VAL VAL A . n A 1 40 THR 40 20 20 THR THR A . n A 1 41 THR 41 21 21 THR THR A . n A 1 42 ASN 42 22 22 ASN ASN A . n A 1 43 TRP 43 23 23 TRP TRP A . n A 1 44 LYS 44 24 24 LYS LYS A . n A 1 45 GLY 45 25 25 GLY GLY A . n A 1 46 GLU 46 26 26 GLU GLU A . n A 1 47 LEU 47 27 27 LEU LEU A . n A 1 48 VAL 48 28 28 VAL VAL A . n A 1 49 GLY 49 29 29 GLY GLY A . n A 1 50 MET 50 30 30 MET MET A . n A 1 51 THR 51 31 31 THR THR A . n A 1 52 VAL 52 32 32 VAL VAL A . n A 1 53 ASN 53 33 33 ASN ASN A . n A 1 54 THR 54 34 34 THR THR A . n A 1 55 PHE 55 35 35 PHE PHE A . n A 1 56 ASN 56 36 36 ASN ASN A . n A 1 57 SER 57 37 37 SER SER A . n A 1 58 LEU 58 38 38 LEU LEU A . n A 1 59 SER 59 39 39 SER SER A . n A 1 60 LEU 60 40 40 LEU LEU A . n A 1 61 ASN 61 41 41 ASN ASN A . n A 1 62 PRO 62 42 42 PRO PRO A . n A 1 63 PRO 63 43 43 PRO PRO A . n A 1 64 LEU 64 44 44 LEU LEU A . n A 1 65 VAL 65 45 45 VAL VAL A . n A 1 66 SER 66 46 46 SER SER A . n A 1 67 PHE 67 47 47 PHE PHE A . n A 1 68 PHE 68 48 48 PHE PHE A . n A 1 69 ALA 69 49 49 ALA ALA A . n A 1 70 ASP 70 50 50 ASP ASP A . n A 1 71 ARG 71 51 51 ARG ARG A . n A 1 72 MET 72 52 52 MET MET A . n A 1 73 LYS 73 53 53 LYS LYS A . n A 1 74 GLY 74 54 54 GLY GLY A . n A 1 75 ASN 75 55 55 ASN ASN A . n A 1 76 ASP 76 56 56 ASP ASP A . n A 1 77 ILE 77 57 57 ILE ILE A . n A 1 78 PRO 78 58 58 PRO PRO A . n A 1 79 TYR 79 59 59 TYR TYR A . n A 1 80 LYS 80 60 60 LYS LYS A . n A 1 81 GLU 81 61 61 GLU GLU A . n A 1 82 SER 82 62 62 SER SER A . n A 1 83 LYS 83 63 63 LYS LYS A . n A 1 84 TYR 84 64 64 TYR TYR A . n A 1 85 PHE 85 65 65 PHE PHE A . n A 1 86 VAL 86 66 66 VAL VAL A . n A 1 87 VAL 87 67 67 VAL VAL A . n A 1 88 ASN 88 68 68 ASN ASN A . n A 1 89 PHE 89 69 69 PHE PHE A . n A 1 90 THR 90 70 70 THR THR A . n A 1 91 ASP 91 71 71 ASP ASP A . n A 1 92 ASN 92 72 72 ASN ASN A . n A 1 93 GLU 93 73 73 GLU GLU A . n A 1 94 GLU 94 74 74 GLU GLU A . n A 1 95 LEU 95 75 75 LEU LEU A . n A 1 96 PHE 96 76 76 PHE PHE A . n A 1 97 ASN 97 77 77 ASN ASN A . n A 1 98 ILE 98 78 78 ILE ILE A . n A 1 99 PHE 99 79 79 PHE PHE A . n A 1 100 ALA 100 80 80 ALA ALA A . n A 1 101 LEU 101 81 81 LEU LEU A . n A 1 102 LYS 102 82 82 LYS LYS A . n A 1 103 PRO 103 83 83 PRO PRO A . n A 1 104 VAL 104 84 84 VAL VAL A . n A 1 105 LYS 105 85 85 LYS LYS A . n A 1 106 GLU 106 86 86 GLU GLU A . n A 1 107 ARG 107 87 87 ARG ARG A . n A 1 108 PHE 108 88 88 PHE PHE A . n A 1 109 ARG 109 89 89 ARG ARG A . n A 1 110 GLU 110 90 90 GLU GLU A . n A 1 111 ILE 111 91 91 ILE ILE A . n A 1 112 LYS 112 92 92 LYS LYS A . n A 1 113 TYR 113 93 93 TYR TYR A . n A 1 114 LYS 114 94 94 LYS LYS A . n A 1 115 GLU 115 95 95 GLU GLU A . n A 1 116 GLY 116 96 96 GLY GLY A . n A 1 117 ILE 117 97 97 ILE ILE A . n A 1 118 GLY 118 98 98 GLY GLY A . n A 1 119 GLY 119 99 99 GLY GLY A . n A 1 120 CYS 120 100 100 CYS CYS A . n A 1 121 PRO 121 101 101 PRO PRO A . n A 1 122 ILE 122 102 102 ILE ILE A . n A 1 123 LEU 123 103 103 LEU LEU A . n A 1 124 TYR 124 104 104 TYR TYR A . n A 1 125 ASP 125 105 105 ASP ASP A . n A 1 126 SER 126 106 106 SER SER A . n A 1 127 TYR 127 107 107 TYR TYR A . n A 1 128 ALA 128 108 108 ALA ALA A . n A 1 129 TYR 129 109 109 TYR TYR A . n A 1 130 ILE 130 110 110 ILE ILE A . n A 1 131 GLU 131 111 111 GLU GLU A . n A 1 132 ALA 132 112 112 ALA ALA A . n A 1 133 LYS 133 113 113 LYS LYS A . n A 1 134 LEU 134 114 114 LEU LEU A . n A 1 135 TYR 135 115 115 TYR TYR A . n A 1 136 ASP 136 116 116 ASP ASP A . n A 1 137 THR 137 117 117 THR THR A . n A 1 138 ILE 138 118 118 ILE ILE A . n A 1 139 ASP 139 119 119 ASP ASP A . n A 1 140 VAL 140 120 120 VAL VAL A . n A 1 141 GLY 141 121 121 GLY GLY A . n A 1 142 ASP 142 122 122 ASP ASP A . n A 1 143 HIS 143 123 123 HIS HIS A . n A 1 144 SER 144 124 124 SER SER A . n A 1 145 ILE 145 125 125 ILE ILE A . n A 1 146 ILE 146 126 126 ILE ILE A . n A 1 147 VAL 147 127 127 VAL VAL A . n A 1 148 GLY 148 128 128 GLY GLY A . n A 1 149 GLU 149 129 129 GLU GLU A . n A 1 150 VAL 150 130 130 VAL VAL A . n A 1 151 ILE 151 131 131 ILE ILE A . n A 1 152 ASP 152 132 132 ASP ASP A . n A 1 153 GLY 153 133 133 GLY GLY A . n A 1 154 TYR 154 134 134 TYR TYR A . n A 1 155 GLN 155 135 135 GLN GLN A . n A 1 156 ILE 156 136 136 ILE ILE A . n A 1 157 ARG 157 137 137 ARG ARG A . n A 1 158 ASP 158 138 138 ASP ASP A . n A 1 159 ASN 159 139 139 ASN ASN A . n A 1 160 PHE 160 140 140 PHE PHE A . n A 1 161 THR 161 141 141 THR THR A . n A 1 162 PRO 162 142 142 PRO PRO A . n A 1 163 LEU 163 143 143 LEU LEU A . n A 1 164 VAL 164 144 144 VAL VAL A . n A 1 165 TYR 165 145 145 TYR TYR A . n A 1 166 MET 166 146 146 MET MET A . n A 1 167 ASN 167 147 147 ASN ASN A . n A 1 168 ARG 168 148 148 ARG ARG A . n A 1 169 LYS 169 149 149 LYS LYS A . n A 1 170 TYR 170 150 150 TYR TYR A . n A 1 171 TYR 171 151 151 TYR TYR A . n A 1 172 LYS 172 152 152 LYS LYS A . n A 1 173 LEU 173 153 153 LEU LEU A . n A 1 174 SER 174 154 154 SER SER A . n A 1 175 SER 175 155 155 SER SER A . n A 1 176 LEU 176 156 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 200 200 FMN FMN A . C 3 NAD 1 300 300 NAD NAD A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . D 4 HOH 11 311 11 HOH HOH A . D 4 HOH 12 312 12 HOH HOH A . D 4 HOH 13 313 13 HOH HOH A . D 4 HOH 14 314 14 HOH HOH A . D 4 HOH 15 315 15 HOH HOH A . D 4 HOH 16 316 16 HOH HOH A . D 4 HOH 17 317 17 HOH HOH A . D 4 HOH 18 318 18 HOH HOH A . D 4 HOH 19 319 19 HOH HOH A . D 4 HOH 20 320 20 HOH HOH A . D 4 HOH 21 321 21 HOH HOH A . D 4 HOH 22 322 22 HOH HOH A . D 4 HOH 23 323 23 HOH HOH A . D 4 HOH 24 324 24 HOH HOH A . D 4 HOH 25 325 25 HOH HOH A . D 4 HOH 26 326 26 HOH HOH A . D 4 HOH 27 327 27 HOH HOH A . D 4 HOH 28 328 28 HOH HOH A . D 4 HOH 29 329 29 HOH HOH A . D 4 HOH 30 330 30 HOH HOH A . D 4 HOH 31 331 31 HOH HOH A . D 4 HOH 32 332 32 HOH HOH A . D 4 HOH 33 333 33 HOH HOH A . D 4 HOH 34 334 34 HOH HOH A . D 4 HOH 35 335 35 HOH HOH A . D 4 HOH 36 336 36 HOH HOH A . D 4 HOH 37 337 37 HOH HOH A . D 4 HOH 38 338 38 HOH HOH A . D 4 HOH 39 339 39 HOH HOH A . D 4 HOH 40 340 40 HOH HOH A . D 4 HOH 41 341 41 HOH HOH A . D 4 HOH 42 342 42 HOH HOH A . D 4 HOH 43 343 43 HOH HOH A . D 4 HOH 44 344 44 HOH HOH A . D 4 HOH 45 345 45 HOH HOH A . D 4 HOH 46 346 46 HOH HOH A . D 4 HOH 47 347 47 HOH HOH A . D 4 HOH 48 348 48 HOH HOH A . D 4 HOH 49 349 49 HOH HOH A . D 4 HOH 50 350 50 HOH HOH A . D 4 HOH 51 351 51 HOH HOH A . D 4 HOH 52 352 52 HOH HOH A . D 4 HOH 53 353 53 HOH HOH A . D 4 HOH 54 354 54 HOH HOH A . D 4 HOH 55 355 55 HOH HOH A . D 4 HOH 56 356 56 HOH HOH A . D 4 HOH 57 357 57 HOH HOH A . D 4 HOH 58 358 58 HOH HOH A . D 4 HOH 59 359 59 HOH HOH A . D 4 HOH 60 360 60 HOH HOH A . D 4 HOH 61 361 61 HOH HOH A . D 4 HOH 62 362 62 HOH HOH A . D 4 HOH 63 363 63 HOH HOH A . D 4 HOH 64 364 64 HOH HOH A . D 4 HOH 65 365 65 HOH HOH A . D 4 HOH 66 366 66 HOH HOH A . D 4 HOH 67 367 67 HOH HOH A . D 4 HOH 68 368 68 HOH HOH A . D 4 HOH 69 369 69 HOH HOH A . D 4 HOH 70 370 70 HOH HOH A . D 4 HOH 71 371 71 HOH HOH A . D 4 HOH 72 372 72 HOH HOH A . D 4 HOH 73 373 73 HOH HOH A . D 4 HOH 74 374 74 HOH HOH A . D 4 HOH 75 375 75 HOH HOH A . D 4 HOH 76 376 76 HOH HOH A . D 4 HOH 77 377 77 HOH HOH A . D 4 HOH 78 378 78 HOH HOH A . D 4 HOH 79 379 79 HOH HOH A . D 4 HOH 80 380 80 HOH HOH A . D 4 HOH 81 381 81 HOH HOH A . D 4 HOH 82 382 82 HOH HOH A . D 4 HOH 83 383 83 HOH HOH A . D 4 HOH 84 384 84 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8340 ? 1 MORE -60 ? 1 'SSA (A^2)' 12500 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 149.7340602635 0.0000000000 0.0000000000 -1.0000000000 32.6860000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 314 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-30 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A LEU 156 ? A LEU 176 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 4 water HOH #