HEADER OXIDOREDUCTASE 30-SEP-05 2D3Q TITLE CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) THAT CATALYSES TITLE 2 THE BIOLOGICAL OXIDATION OF ANTHRAQUINONE DERIVATIVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECOLORIZING PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DYP; COMPND 5 EC: 1.11.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BJERKANDERA ADUSTA; SOURCE 3 ORGANISM_TAXID: 5331; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT-92 KEYWDS STRANDS AND HELIX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SATO,Y.SUGANO,M.SHODA REVDAT 5 13-MAR-24 2D3Q 1 REMARK LINK REVDAT 4 26-OCT-11 2D3Q 1 JRNL SOURCE VERSN REVDAT 3 25-MAY-11 2D3Q 1 SOURCE REVDAT 2 24-FEB-09 2D3Q 1 VERSN REVDAT 1 30-SEP-06 2D3Q 0 JRNL AUTH T.YOSHIDA,H.TSUGE,H.KONNO,T.HISABORI,Y.SUGANO JRNL TITL THE CATALYTIC MECHANISM OF DYE-DECOLORIZING PEROXIDASE DYP JRNL TITL 2 MAY REQUIRE THE SWINGING MOVEMENT OF AN ASPARTIC ACID JRNL TITL 3 RESIDUE JRNL REF FEBS J. V. 278 2387 2011 JRNL REFN ISSN 1742-464X JRNL PMID 21569205 JRNL DOI 10.1111/J.1742-4658.2011.08161.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SATO,S.HARA,T.MATSUI,G.SAZAKI,S.SAIJO,T.GANBE,N.TANAKA, REMARK 1 AUTH 2 Y.SUGANO,M.SHODA REMARK 1 TITL A UNIQUE DYE-DECOLORIZING PEROXIDASE, DYP, FROM REMARK 1 TITL 2 THANATEPHORUS CUCUMERIS DEC 1: HETEROLOGOUS EXPRESSION, REMARK 1 TITL 3 CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 149 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14684913 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4859 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 1.190 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000024949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 95; NULL REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B; BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.7; 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE, CRYSTALCLEAR REMARK 200 (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.89M (NH4)2SO4, 0.92M NACL, PH 4.2, REMARK 280 SMALL TUBES, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 242.39733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.19867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.79800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.59933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 302.99667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 242.39733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 121.19867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.59933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 181.79800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 302.99667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 ALA B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 278 OD1 ASP A 278 10665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 314 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 5 98.13 17.02 REMARK 500 THR A 113 48.99 -70.11 REMARK 500 SER A 140 -48.00 177.83 REMARK 500 GLN A 150 145.59 -174.53 REMARK 500 SER A 216 146.53 -175.99 REMARK 500 ALA A 236 10.38 -69.33 REMARK 500 ASN A 237 11.46 -151.71 REMARK 500 ALA A 238 134.22 -38.31 REMARK 500 SER A 243 -55.60 -22.06 REMARK 500 THR A 248 -159.05 -76.81 REMARK 500 ARG A 287 -30.97 -130.58 REMARK 500 ASN A 288 2.20 -63.23 REMARK 500 ASP A 292 19.75 -153.35 REMARK 500 THR A 296 32.81 -151.24 REMARK 500 ASN A 313 83.84 -151.80 REMARK 500 ARG A 315 -114.25 45.79 REMARK 500 ASP A 317 -6.01 -53.89 REMARK 500 THR A 324 -42.74 -22.36 REMARK 500 SER A 330 47.74 -147.04 REMARK 500 SER A 345 -15.34 -147.58 REMARK 500 TRP A 374 -69.70 -107.81 REMARK 500 SER A 383 63.21 38.14 REMARK 500 LEU A 408 -75.98 -70.57 REMARK 500 THR A 439 -54.36 -121.67 REMARK 500 PRO B 7 68.23 -68.57 REMARK 500 LEU B 8 -19.30 -46.61 REMARK 500 PRO B 59 -28.84 -36.55 REMARK 500 ASP B 83 160.63 -47.72 REMARK 500 ASP B 160 4.51 -68.75 REMARK 500 GLU B 182 -98.64 -33.59 REMARK 500 THR B 183 153.54 47.45 REMARK 500 ALA B 244 1.78 -59.99 REMARK 500 ARG B 287 -35.27 -134.78 REMARK 500 ASN B 290 75.02 -105.35 REMARK 500 ASP B 292 12.76 -164.40 REMARK 500 THR B 296 50.54 -155.38 REMARK 500 ASN B 313 84.78 -159.17 REMARK 500 ARG B 315 -119.30 51.34 REMARK 500 ASP B 323 -73.29 -50.19 REMARK 500 THR B 324 165.38 -47.77 REMARK 500 PHE B 325 -24.00 83.25 REMARK 500 SER B 330 50.90 -149.86 REMARK 500 TRP B 374 -74.21 -118.17 REMARK 500 ASN B 409 47.06 -157.54 REMARK 500 THR B 439 -63.86 -108.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 446 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 308 NE2 REMARK 620 2 HEM A 446 NA 98.4 REMARK 620 3 HEM A 446 NB 91.3 95.1 REMARK 620 4 HEM A 446 NC 90.8 170.8 84.1 REMARK 620 5 HEM A 446 ND 94.7 86.6 173.5 93.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 446 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 308 NE2 REMARK 620 2 HEM B 446 NA 95.8 REMARK 620 3 HEM B 446 NB 96.2 85.0 REMARK 620 4 HEM B 446 NC 95.0 168.7 90.5 REMARK 620 5 HEM B 446 ND 95.2 93.6 168.6 88.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 446 DBREF 2D3Q A 1 442 GB 4760440 BAA77283 57 498 DBREF 2D3Q B 1 442 GB 4760440 BAA77283 57 498 SEQRES 1 A 442 ALA ASN ASP THR ILE LEU PRO LEU ASN ASN ILE GLN GLY SEQRES 2 A 442 ASP ILE LEU VAL GLY MET LYS LYS GLN LYS GLU ARG PHE SEQRES 3 A 442 VAL PHE PHE GLN VAL ASN ASP ALA THR SER PHE LYS THR SEQRES 4 A 442 ALA LEU LYS THR TYR VAL PRO GLU ARG ILE THR SER ALA SEQRES 5 A 442 ALA ILE LEU ILE SER ASP PRO SER GLN GLN PRO LEU ALA SEQRES 6 A 442 PHE VAL ASN LEU GLY PHE SER ASN THR GLY LEU GLN ALA SEQRES 7 A 442 LEU GLY ILE THR ASP ASP LEU GLY ASP ALA GLN PHE PRO SEQRES 8 A 442 ASP GLY GLN PHE ALA ASP ALA ALA ASN LEU GLY ASP ASP SEQRES 9 A 442 LEU SER GLN TRP VAL ALA PRO PHE THR GLY THR THR ILE SEQRES 10 A 442 HIS GLY VAL PHE LEU ILE GLY SER ASP GLN ASP ASP PHE SEQRES 11 A 442 LEU ASP GLN PHE THR ASP ASP ILE SER SER THR PHE GLY SEQRES 12 A 442 SER SER ILE THR GLN VAL GLN ALA LEU SER GLY SER ALA SEQRES 13 A 442 ARG PRO GLY ASP GLN ALA GLY HIS GLU HIS PHE GLY PHE SEQRES 14 A 442 LEU ASP GLY ILE SER GLN PRO SER VAL THR GLY TRP GLU SEQRES 15 A 442 THR THR VAL PHE PRO GLY GLN ALA VAL VAL PRO PRO GLY SEQRES 16 A 442 ILE ILE LEU THR GLY ARG ASP GLY ASP THR GLY THR ARG SEQRES 17 A 442 PRO SER TRP ALA LEU ASP GLY SER PHE MET ALA PHE ARG SEQRES 18 A 442 HIS PHE GLN GLN LYS VAL PRO GLU PHE ASN ALA TYR THR SEQRES 19 A 442 LEU ALA ASN ALA ILE PRO ALA ASN SER ALA GLY ASN LEU SEQRES 20 A 442 THR GLN GLN GLU GLY ALA GLU PHE LEU GLY ALA ARG MET SEQRES 21 A 442 PHE GLY ARG TRP LYS SER GLY ALA PRO ILE ASP LEU ALA SEQRES 22 A 442 PRO THR ALA ASP ASP PRO ALA LEU GLY ALA ASP PRO GLN SEQRES 23 A 442 ARG ASN ASN ASN PHE ASP TYR SER ASP THR LEU THR ASP SEQRES 24 A 442 GLU THR ARG CYS PRO PHE GLY ALA HIS VAL ARG LYS THR SEQRES 25 A 442 ASN PRO ARG GLN ASP LEU GLY GLY PRO VAL ASP THR PHE SEQRES 26 A 442 HIS ALA MET ARG SER SER ILE PRO TYR GLY PRO GLU THR SEQRES 27 A 442 SER ASP ALA GLU LEU ALA SER GLY VAL THR ALA GLN ASP SEQRES 28 A 442 ARG GLY LEU LEU PHE VAL GLU TYR GLN SER ILE ILE GLY SEQRES 29 A 442 ASN GLY PHE ARG PHE GLN GLN ILE ASN TRP ALA ASN ASN SEQRES 30 A 442 ALA ASN PHE PRO PHE SER LYS PRO ILE THR PRO GLY ILE SEQRES 31 A 442 GLU PRO ILE ILE GLY GLN THR THR PRO ARG THR VAL GLY SEQRES 32 A 442 GLY LEU ASP PRO LEU ASN GLN ASN GLU THR PHE THR VAL SEQRES 33 A 442 PRO LEU PHE VAL ILE PRO LYS GLY GLY GLU TYR PHE PHE SEQRES 34 A 442 LEU PRO SER ILE SER ALA LEU THR ALA THR ILE ALA ALA SEQRES 1 B 442 ALA ASN ASP THR ILE LEU PRO LEU ASN ASN ILE GLN GLY SEQRES 2 B 442 ASP ILE LEU VAL GLY MET LYS LYS GLN LYS GLU ARG PHE SEQRES 3 B 442 VAL PHE PHE GLN VAL ASN ASP ALA THR SER PHE LYS THR SEQRES 4 B 442 ALA LEU LYS THR TYR VAL PRO GLU ARG ILE THR SER ALA SEQRES 5 B 442 ALA ILE LEU ILE SER ASP PRO SER GLN GLN PRO LEU ALA SEQRES 6 B 442 PHE VAL ASN LEU GLY PHE SER ASN THR GLY LEU GLN ALA SEQRES 7 B 442 LEU GLY ILE THR ASP ASP LEU GLY ASP ALA GLN PHE PRO SEQRES 8 B 442 ASP GLY GLN PHE ALA ASP ALA ALA ASN LEU GLY ASP ASP SEQRES 9 B 442 LEU SER GLN TRP VAL ALA PRO PHE THR GLY THR THR ILE SEQRES 10 B 442 HIS GLY VAL PHE LEU ILE GLY SER ASP GLN ASP ASP PHE SEQRES 11 B 442 LEU ASP GLN PHE THR ASP ASP ILE SER SER THR PHE GLY SEQRES 12 B 442 SER SER ILE THR GLN VAL GLN ALA LEU SER GLY SER ALA SEQRES 13 B 442 ARG PRO GLY ASP GLN ALA GLY HIS GLU HIS PHE GLY PHE SEQRES 14 B 442 LEU ASP GLY ILE SER GLN PRO SER VAL THR GLY TRP GLU SEQRES 15 B 442 THR THR VAL PHE PRO GLY GLN ALA VAL VAL PRO PRO GLY SEQRES 16 B 442 ILE ILE LEU THR GLY ARG ASP GLY ASP THR GLY THR ARG SEQRES 17 B 442 PRO SER TRP ALA LEU ASP GLY SER PHE MET ALA PHE ARG SEQRES 18 B 442 HIS PHE GLN GLN LYS VAL PRO GLU PHE ASN ALA TYR THR SEQRES 19 B 442 LEU ALA ASN ALA ILE PRO ALA ASN SER ALA GLY ASN LEU SEQRES 20 B 442 THR GLN GLN GLU GLY ALA GLU PHE LEU GLY ALA ARG MET SEQRES 21 B 442 PHE GLY ARG TRP LYS SER GLY ALA PRO ILE ASP LEU ALA SEQRES 22 B 442 PRO THR ALA ASP ASP PRO ALA LEU GLY ALA ASP PRO GLN SEQRES 23 B 442 ARG ASN ASN ASN PHE ASP TYR SER ASP THR LEU THR ASP SEQRES 24 B 442 GLU THR ARG CYS PRO PHE GLY ALA HIS VAL ARG LYS THR SEQRES 25 B 442 ASN PRO ARG GLN ASP LEU GLY GLY PRO VAL ASP THR PHE SEQRES 26 B 442 HIS ALA MET ARG SER SER ILE PRO TYR GLY PRO GLU THR SEQRES 27 B 442 SER ASP ALA GLU LEU ALA SER GLY VAL THR ALA GLN ASP SEQRES 28 B 442 ARG GLY LEU LEU PHE VAL GLU TYR GLN SER ILE ILE GLY SEQRES 29 B 442 ASN GLY PHE ARG PHE GLN GLN ILE ASN TRP ALA ASN ASN SEQRES 30 B 442 ALA ASN PHE PRO PHE SER LYS PRO ILE THR PRO GLY ILE SEQRES 31 B 442 GLU PRO ILE ILE GLY GLN THR THR PRO ARG THR VAL GLY SEQRES 32 B 442 GLY LEU ASP PRO LEU ASN GLN ASN GLU THR PHE THR VAL SEQRES 33 B 442 PRO LEU PHE VAL ILE PRO LYS GLY GLY GLU TYR PHE PHE SEQRES 34 B 442 LEU PRO SER ILE SER ALA LEU THR ALA THR ILE ALA ALA HET HEM A 446 43 HET HEM B 446 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *11(H2 O) HELIX 1 1 GLN A 12 VAL A 17 1 6 HELIX 2 2 ASP A 33 ILE A 49 1 17 HELIX 3 3 SER A 51 SER A 57 1 7 HELIX 4 4 ASP A 58 GLN A 62 5 5 HELIX 5 5 SER A 72 LEU A 79 1 8 HELIX 6 6 GLN A 89 GLY A 93 5 5 HELIX 7 7 ASP A 97 GLY A 102 1 6 HELIX 8 8 ASP A 104 TRP A 108 5 5 HELIX 9 9 GLN A 127 PHE A 142 1 16 HELIX 10 10 PRO A 158 ALA A 162 5 5 HELIX 11 11 PRO A 193 ILE A 197 5 5 HELIX 12 12 PRO A 209 LEU A 213 5 5 HELIX 13 13 LYS A 226 ALA A 236 1 11 HELIX 14 14 THR A 248 GLY A 262 1 15 HELIX 15 15 ASP A 278 ALA A 283 1 6 HELIX 16 16 ALA A 307 ASN A 313 1 7 HELIX 17 17 PRO A 314 GLY A 319 5 6 HELIX 18 18 SER A 339 ALA A 344 1 6 HELIX 19 19 ILE A 362 ASN A 365 5 4 HELIX 20 20 GLY A 366 ILE A 372 1 7 HELIX 21 21 SER A 432 THR A 439 1 8 HELIX 22 22 GLN B 12 VAL B 17 1 6 HELIX 23 23 ASP B 33 ILE B 49 1 17 HELIX 24 24 SER B 51 SER B 57 1 7 HELIX 25 25 ASP B 58 GLN B 62 5 5 HELIX 26 26 SER B 72 LEU B 79 1 8 HELIX 27 27 GLN B 89 GLY B 93 5 5 HELIX 28 28 GLN B 94 GLY B 102 5 9 HELIX 29 29 ASP B 104 TRP B 108 5 5 HELIX 30 30 GLN B 127 GLY B 143 1 17 HELIX 31 31 PRO B 158 ALA B 162 5 5 HELIX 32 32 PRO B 193 ILE B 197 5 5 HELIX 33 33 PRO B 209 LEU B 213 5 5 HELIX 34 34 LYS B 226 ASN B 237 1 12 HELIX 35 35 THR B 248 GLY B 262 1 15 HELIX 36 36 ASP B 278 ASP B 284 1 7 HELIX 37 37 ALA B 307 ASN B 313 1 7 HELIX 38 38 PRO B 314 GLY B 319 5 6 HELIX 39 39 SER B 339 GLY B 346 1 8 HELIX 40 40 ILE B 362 ASN B 365 5 4 HELIX 41 41 GLY B 366 ASN B 373 1 8 HELIX 42 42 ASP B 406 GLN B 410 5 5 HELIX 43 43 SER B 432 THR B 439 1 8 SHEET 1 A 4 ALA A 65 PHE A 71 0 SHEET 2 A 4 GLY A 119 SER A 125 -1 O GLY A 124 N PHE A 66 SHEET 3 A 4 LYS A 23 VAL A 31 -1 N ARG A 25 O ILE A 123 SHEET 4 A 4 ILE A 146 SER A 155 -1 O LEU A 152 N PHE A 26 SHEET 1 B 2 SER A 177 VAL A 178 0 SHEET 2 B 2 VAL A 191 VAL A 192 1 O VAL A 192 N SER A 177 SHEET 1 C 3 MET A 328 ARG A 329 0 SHEET 2 C 3 GLY A 353 GLN A 360 -1 O TYR A 359 N MET A 328 SHEET 3 C 3 ILE A 332 TYR A 334 -1 N ILE A 332 O LEU A 355 SHEET 1 D 4 MET A 328 ARG A 329 0 SHEET 2 D 4 GLY A 353 GLN A 360 -1 O TYR A 359 N MET A 328 SHEET 3 D 4 SER A 216 GLN A 225 -1 N PHE A 223 O LEU A 354 SHEET 4 D 4 VAL A 420 LEU A 430 -1 O GLY A 424 N HIS A 222 SHEET 1 E 2 ALA A 241 ASN A 242 0 SHEET 2 E 2 GLY A 245 ASN A 246 -1 O GLY A 245 N ASN A 242 SHEET 1 F 2 THR A 401 GLY A 403 0 SHEET 2 F 2 THR A 413 THR A 415 -1 O PHE A 414 N VAL A 402 SHEET 1 G 4 ALA B 65 PHE B 71 0 SHEET 2 G 4 GLY B 119 SER B 125 -1 O GLY B 124 N PHE B 66 SHEET 3 G 4 LYS B 23 VAL B 31 -1 N VAL B 27 O PHE B 121 SHEET 4 G 4 ILE B 146 SER B 155 -1 O LEU B 152 N PHE B 26 SHEET 1 H 2 SER B 177 VAL B 178 0 SHEET 2 H 2 VAL B 191 VAL B 192 1 O VAL B 192 N SER B 177 SHEET 1 I 3 MET B 328 ARG B 329 0 SHEET 2 I 3 GLY B 353 GLN B 360 -1 O TYR B 359 N MET B 328 SHEET 3 I 3 ILE B 332 TYR B 334 -1 N ILE B 332 O LEU B 355 SHEET 1 J 4 MET B 328 ARG B 329 0 SHEET 2 J 4 GLY B 353 GLN B 360 -1 O TYR B 359 N MET B 328 SHEET 3 J 4 SER B 216 GLN B 225 -1 N ALA B 219 O GLU B 358 SHEET 4 J 4 VAL B 420 LEU B 430 -1 O GLU B 426 N PHE B 220 SHEET 1 K 2 ALA B 241 ASN B 242 0 SHEET 2 K 2 GLY B 245 ASN B 246 -1 O GLY B 245 N ASN B 242 SHEET 1 L 2 THR B 401 GLY B 403 0 SHEET 2 L 2 THR B 413 THR B 415 -1 O PHE B 414 N VAL B 402 LINK NE2 HIS A 308 FE HEM A 446 1555 1555 2.12 LINK NE2 HIS B 308 FE HEM B 446 1555 1555 2.13 CISPEP 1 ALA A 110 PRO A 111 0 0.14 CISPEP 2 PHE A 380 PRO A 381 0 0.02 CISPEP 3 THR A 398 PRO A 399 0 0.37 CISPEP 4 ALA B 110 PRO B 111 0 -0.11 CISPEP 5 PHE B 380 PRO B 381 0 -0.23 CISPEP 6 THR B 398 PRO B 399 0 0.19 SITE 1 AC1 21 GLU A 165 LEU A 170 ASP A 171 GLY A 172 SITE 2 AC1 21 ILE A 173 SER A 174 PHE A 223 GLN A 225 SITE 3 AC1 21 ARG A 263 HIS A 308 THR A 312 ASN A 313 SITE 4 AC1 21 ARG A 315 ARG A 329 PHE A 356 GLU A 358 SITE 5 AC1 21 PHE A 367 GLN A 370 GLN A 371 ILE A 394 SITE 6 AC1 21 VAL A 420 SITE 1 AC2 23 GLU B 165 PHE B 169 LEU B 170 ASP B 171 SITE 2 AC2 23 GLY B 172 ILE B 173 SER B 174 PHE B 223 SITE 3 AC2 23 GLN B 225 PHE B 261 ARG B 263 HIS B 308 SITE 4 AC2 23 VAL B 309 THR B 312 ASN B 313 ARG B 315 SITE 5 AC2 23 ARG B 329 PHE B 356 PHE B 367 GLN B 370 SITE 6 AC2 23 GLN B 371 ILE B 394 VAL B 420 CRYST1 136.212 136.212 363.596 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007341 0.004239 0.000000 0.00000 SCALE2 0.000000 0.008477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002750 0.00000