data_2D47 # _entry.id 2D47 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D47 pdb_00002d47 10.2210/pdb2d47/pdb RCSB ADL025 ? ? WWPDB D_1000177977 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-10-02 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.detector' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D47 _pdbx_database_status.recvd_initial_deposition_date 1991-10-02 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Verdaguer, N.' 1 'Aymami, J.' 2 'Fernandez-Forner, D.' 3 'Fita, I.' 4 'Coll, M.' 5 'Huynh-Dinh, T.' 6 'Igolen, J.' 7 'Subirana, J.A.' 8 # _citation.id primary _citation.title 'Molecular structure of a complete turn of A-DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 221 _citation.page_first 623 _citation.page_last 635 _citation.year 1991 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1920437 _citation.pdbx_database_id_DOI '10.1016/0022-2836(91)80077-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Verdaguer, N.' 1 ? primary 'Aymami, J.' 2 ? primary 'Fernandez-Forner, D.' 3 ? primary 'Fita, I.' 4 ? primary 'Coll, M.' 5 ? primary 'Huynh-Dinh, T.' 6 ? primary 'Igolen, J.' 7 ? primary 'Subirana, J.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3') ; 3665.368 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DC)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCCCCGCGGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DC 2 14 14 DC C B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DC 4 16 16 DC C B . n B 1 5 DC 5 17 17 DC C B . n B 1 6 DG 6 18 18 DG G B . n B 1 7 DC 7 19 19 DC C B . n B 1 8 DG 8 20 20 DG G B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 25 25 SPM SPM A . D 3 HOH 1 26 26 HOH HOH A . D 3 HOH 2 27 27 HOH HOH A . D 3 HOH 3 28 28 HOH HOH A . D 3 HOH 4 30 30 HOH HOH A . D 3 HOH 5 34 34 HOH HOH A . D 3 HOH 6 36 36 HOH HOH A . D 3 HOH 7 37 37 HOH HOH A . D 3 HOH 8 38 38 HOH HOH A . D 3 HOH 9 40 40 HOH HOH A . D 3 HOH 10 41 41 HOH HOH A . D 3 HOH 11 42 42 HOH HOH A . D 3 HOH 12 44 44 HOH HOH A . D 3 HOH 13 45 45 HOH HOH A . D 3 HOH 14 47 47 HOH HOH A . D 3 HOH 15 48 48 HOH HOH A . D 3 HOH 16 50 50 HOH HOH A . D 3 HOH 17 51 51 HOH HOH A . D 3 HOH 18 55 55 HOH HOH A . D 3 HOH 19 59 59 HOH HOH A . D 3 HOH 20 60 60 HOH HOH A . D 3 HOH 21 61 61 HOH HOH A . D 3 HOH 22 62 62 HOH HOH A . D 3 HOH 23 63 63 HOH HOH A . D 3 HOH 24 64 64 HOH HOH A . D 3 HOH 25 68 68 HOH HOH A . D 3 HOH 26 69 69 HOH HOH A . D 3 HOH 27 70 70 HOH HOH A . D 3 HOH 28 71 71 HOH HOH A . D 3 HOH 29 72 72 HOH HOH A . D 3 HOH 30 76 76 HOH HOH A . D 3 HOH 31 77 77 HOH HOH A . D 3 HOH 32 79 79 HOH HOH A . D 3 HOH 33 80 80 HOH HOH A . D 3 HOH 34 81 81 HOH HOH A . D 3 HOH 35 82 82 HOH HOH A . D 3 HOH 36 83 83 HOH HOH A . D 3 HOH 37 85 85 HOH HOH A . D 3 HOH 38 86 86 HOH HOH A . D 3 HOH 39 89 89 HOH HOH A . D 3 HOH 40 91 91 HOH HOH A . D 3 HOH 41 93 93 HOH HOH A . D 3 HOH 42 94 94 HOH HOH A . D 3 HOH 43 95 95 HOH HOH A . D 3 HOH 44 98 98 HOH HOH A . D 3 HOH 45 99 99 HOH HOH A . D 3 HOH 46 101 101 HOH HOH A . D 3 HOH 47 103 103 HOH HOH A . D 3 HOH 48 104 104 HOH HOH A . D 3 HOH 49 106 106 HOH HOH A . D 3 HOH 50 108 108 HOH HOH A . D 3 HOH 51 110 110 HOH HOH A . D 3 HOH 52 111 111 HOH HOH A . D 3 HOH 53 112 112 HOH HOH A . D 3 HOH 54 113 113 HOH HOH A . D 3 HOH 55 114 114 HOH HOH A . D 3 HOH 56 115 115 HOH HOH A . D 3 HOH 57 116 116 HOH HOH A . D 3 HOH 58 118 118 HOH HOH A . D 3 HOH 59 121 121 HOH HOH A . D 3 HOH 60 122 122 HOH HOH A . D 3 HOH 61 125 125 HOH HOH A . D 3 HOH 62 126 126 HOH HOH A . D 3 HOH 63 127 127 HOH HOH A . D 3 HOH 64 128 128 HOH HOH A . D 3 HOH 65 131 131 HOH HOH A . D 3 HOH 66 132 132 HOH HOH A . E 3 HOH 1 29 29 HOH HOH B . E 3 HOH 2 31 31 HOH HOH B . E 3 HOH 3 32 32 HOH HOH B . E 3 HOH 4 33 33 HOH HOH B . E 3 HOH 5 35 35 HOH HOH B . E 3 HOH 6 39 39 HOH HOH B . E 3 HOH 7 43 43 HOH HOH B . E 3 HOH 8 46 46 HOH HOH B . E 3 HOH 9 49 49 HOH HOH B . E 3 HOH 10 52 52 HOH HOH B . E 3 HOH 11 53 53 HOH HOH B . E 3 HOH 12 54 54 HOH HOH B . E 3 HOH 13 56 56 HOH HOH B . E 3 HOH 14 57 57 HOH HOH B . E 3 HOH 15 58 58 HOH HOH B . E 3 HOH 16 65 65 HOH HOH B . E 3 HOH 17 66 66 HOH HOH B . E 3 HOH 18 67 67 HOH HOH B . E 3 HOH 19 73 73 HOH HOH B . E 3 HOH 20 74 74 HOH HOH B . E 3 HOH 21 75 75 HOH HOH B . E 3 HOH 22 78 78 HOH HOH B . E 3 HOH 23 84 84 HOH HOH B . E 3 HOH 24 87 87 HOH HOH B . E 3 HOH 25 88 88 HOH HOH B . E 3 HOH 26 90 90 HOH HOH B . E 3 HOH 27 92 92 HOH HOH B . E 3 HOH 28 96 96 HOH HOH B . E 3 HOH 29 97 97 HOH HOH B . E 3 HOH 30 100 100 HOH HOH B . E 3 HOH 31 102 102 HOH HOH B . E 3 HOH 32 105 105 HOH HOH B . E 3 HOH 33 107 107 HOH HOH B . E 3 HOH 34 109 109 HOH HOH B . E 3 HOH 35 117 117 HOH HOH B . E 3 HOH 36 119 119 HOH HOH B . E 3 HOH 37 120 120 HOH HOH B . E 3 HOH 38 123 123 HOH HOH B . E 3 HOH 39 124 124 HOH HOH B . E 3 HOH 40 129 129 HOH HOH B . E 3 HOH 41 130 130 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement '(MODIFIED BY G.J.QUIGLEY)' ? 1 MODIFIED refinement 'BY G.J.QUIGLEY' ? 2 # _cell.entry_id 2D47 _cell.length_a 45.200 _cell.length_b 45.200 _cell.length_c 65.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D47 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 2D47 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_percent_sol 52.96 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 CACL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS CAD4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2D47 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 2333 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2D47 _refine.ls_number_reflns_obs 2082 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1770000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 607 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 7.000 # _database_PDB_matrix.entry_id 2D47 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2D47 _struct.title 'MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D47 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2D47 _struct_ref.pdbx_db_accession 2D47 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D47 A 1 ? 12 ? 2D47 1 ? 12 ? 1 12 2 1 2D47 B 1 ? 12 ? 2D47 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 9 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 9 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 9 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 25 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE SPM A 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DC A 4 ? DC A 4 . ? 1_555 ? 2 AC1 9 DC A 5 ? DC A 5 . ? 1_555 ? 3 AC1 9 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 9 DC A 7 ? DC A 7 . ? 1_555 ? 5 AC1 9 DG A 8 ? DG A 8 . ? 1_555 ? 6 AC1 9 DC B 3 ? DC B 15 . ? 1_555 ? 7 AC1 9 DC B 5 ? DC B 17 . ? 1_555 ? 8 AC1 9 DG B 6 ? DG B 18 . ? 1_555 ? 9 AC1 9 DC B 7 ? DC B 19 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 45 ? ? O A HOH 64 ? ? 0.00 2 1 O A HOH 61 ? ? O A HOH 112 ? ? 1.15 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 42 ? ? 1_555 O B HOH 29 ? ? 4_555 1.81 2 1 O A HOH 111 ? ? 1_555 O A HOH 111 ? ? 6_555 2.05 3 1 N4 A DC 1 ? ? 1_555 "C5'" A DG 9 ? ? 4_565 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.448 1.518 -0.070 0.010 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.544 1.420 0.124 0.011 N 3 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.385 1.335 0.050 0.007 N 4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.496 1.420 0.076 0.011 N 5 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.391 1.335 0.056 0.007 N 6 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.372 1.425 -0.053 0.008 N 7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? 1.492 1.420 0.072 0.011 N 8 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.530 1.593 -0.063 0.010 N 9 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.664 1.593 0.071 0.010 N 10 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.376 1.446 -0.070 0.010 N 11 1 "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? 1.578 1.512 0.066 0.007 N 12 1 N7 A DG 9 ? ? C8 A DG 9 ? ? 1.343 1.305 0.038 0.006 N 13 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.661 1.593 0.068 0.010 N 14 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? 1.505 1.420 0.085 0.011 N 15 1 "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 1.555 1.512 0.043 0.007 N 16 1 C4 B DC 13 ? ? C5 B DC 13 ? ? 1.476 1.425 0.051 0.008 N 17 1 "O5'" B DC 14 ? ? "C5'" B DC 14 ? ? 1.540 1.440 0.100 0.016 N 18 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.384 1.335 0.049 0.007 N 19 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.489 1.420 0.069 0.011 N 20 1 "O3'" B DC 15 ? ? "C3'" B DC 15 ? ? 1.369 1.419 -0.050 0.006 N 21 1 P B DC 16 ? ? "O5'" B DC 16 ? ? 1.656 1.593 0.063 0.010 N 22 1 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.569 1.512 0.057 0.007 N 23 1 "O3'" B DG 18 ? ? P B DC 19 ? ? 1.688 1.607 0.081 0.012 Y 24 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.380 1.335 0.045 0.007 N 25 1 P B DG 21 ? ? "O5'" B DG 21 ? ? 1.682 1.593 0.089 0.010 N 26 1 C6 B DG 21 ? ? N1 B DG 21 ? ? 1.346 1.391 -0.045 0.007 N 27 1 C5 B DG 21 ? ? N7 B DG 21 ? ? 1.426 1.388 0.038 0.006 N 28 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? 1.541 1.440 0.101 0.016 N 29 1 "C4'" B DG 23 ? ? "C3'" B DG 23 ? ? 1.615 1.529 0.086 0.010 N 30 1 "C2'" B DG 23 ? ? "C1'" B DG 23 ? ? 1.579 1.519 0.060 0.010 N 31 1 "O4'" B DG 23 ? ? "C4'" B DG 23 ? ? 1.366 1.446 -0.080 0.010 N 32 1 "O3'" B DG 23 ? ? "C3'" B DG 23 ? ? 1.308 1.419 -0.111 0.006 N 33 1 C2 B DG 23 ? ? N3 B DG 23 ? ? 1.374 1.323 0.051 0.008 N 34 1 "O3'" B DG 23 ? ? P B DG 24 ? ? 1.531 1.607 -0.076 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.17 108.00 -6.83 0.70 N 2 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.67 120.20 4.47 0.70 N 3 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? "O4'" A DC 2 ? ? 116.54 109.80 6.74 1.10 N 4 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 114.40 108.30 6.10 0.30 N 5 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 118.85 121.90 -3.05 0.40 N 6 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 104.57 109.40 -4.83 0.80 N 7 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.29 119.90 3.39 0.50 N 8 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 126.42 121.90 4.52 0.70 N 9 1 "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? 100.37 109.40 -9.03 0.80 N 10 1 "C1'" A DC 4 ? ? "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.35 110.10 -6.75 1.00 N 11 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 111.42 106.80 4.62 0.50 N 12 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DC 5 ? ? 110.90 119.70 -8.80 1.20 Y 13 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 109.73 119.60 -9.87 1.50 N 14 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP1 A DC 5 ? ? 121.04 110.70 10.34 1.20 N 15 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 146.35 120.90 25.45 1.60 N 16 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.18 119.90 3.28 0.50 N 17 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 118.75 121.90 -3.15 0.40 N 18 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 111.18 120.90 -9.72 1.60 N 19 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 109.90 106.80 3.10 0.50 N 20 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.68 108.30 4.38 0.30 N 21 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.42 111.50 3.92 0.50 N 22 1 "O5'" A DC 7 ? ? "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 104.12 109.40 -5.28 0.80 N 23 1 P A DC 7 ? ? "O5'" A DC 7 ? ? "C5'" A DC 7 ? ? 130.51 120.90 9.61 1.60 N 24 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.50 108.30 2.20 0.30 N 25 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DG 8 ? ? 128.91 119.70 9.21 1.20 Y 26 1 OP1 A DG 8 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 110.45 119.60 -9.15 1.50 N 27 1 "O5'" A DG 8 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 118.74 110.70 8.04 1.20 N 28 1 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 97.87 102.20 -4.33 0.70 N 29 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.58 108.30 5.28 0.30 N 30 1 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 114.26 119.90 -5.64 0.60 N 31 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DG 9 ? ? 127.62 119.70 7.92 1.20 Y 32 1 OP1 A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 105.22 119.60 -14.38 1.50 N 33 1 P A DG 9 ? ? "O5'" A DG 9 ? ? "C5'" A DG 9 ? ? 130.76 120.90 9.86 1.60 N 34 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 121.98 108.30 13.68 0.30 N 35 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 120.85 125.10 -4.25 0.60 N 36 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 114.81 111.50 3.31 0.50 N 37 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.93 108.30 4.63 0.30 N 38 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 114.74 111.50 3.24 0.50 N 39 1 C8 A DG 10 ? ? N9 A DG 10 ? ? C4 A DG 10 ? ? 103.88 106.40 -2.52 0.40 N 40 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 115.70 119.90 -4.20 0.60 N 41 1 P A DG 11 ? ? "O5'" A DG 11 ? ? "C5'" A DG 11 ? ? 110.78 120.90 -10.12 1.60 N 42 1 "C1'" A DG 11 ? ? "O4'" A DG 11 ? ? "C4'" A DG 11 ? ? 115.46 110.30 5.16 0.70 N 43 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 115.98 108.30 7.68 0.30 N 44 1 C6 A DG 11 ? ? N1 A DG 11 ? ? C2 A DG 11 ? ? 121.26 125.10 -3.84 0.60 N 45 1 C5 A DG 11 ? ? C6 A DG 11 ? ? N1 A DG 11 ? ? 115.19 111.50 3.69 0.50 N 46 1 "C3'" A DG 11 ? ? "O3'" A DG 11 ? ? P A DG 12 ? ? 133.95 119.70 14.25 1.20 Y 47 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 106.69 119.60 -12.91 1.50 N 48 1 N9 A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 98.92 112.60 -13.68 1.90 N 49 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 120.04 108.30 11.74 0.30 N 50 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 99.45 109.40 -9.95 0.80 N 51 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.71 108.30 3.41 0.30 N 52 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 119.25 121.90 -2.65 0.40 N 53 1 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 122.36 118.00 4.36 0.70 N 54 1 "O5'" B DC 14 ? ? "C5'" B DC 14 ? ? "C4'" B DC 14 ? ? 99.04 109.40 -10.36 0.80 N 55 1 P B DC 14 ? ? "O5'" B DC 14 ? ? "C5'" B DC 14 ? ? 109.37 120.90 -11.53 1.60 N 56 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 113.38 108.30 5.08 0.30 N 57 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.87 118.90 3.97 0.60 N 58 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? "O4'" B DC 15 ? ? 117.19 109.80 7.39 1.10 N 59 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 113.27 108.30 4.97 0.30 N 60 1 "O5'" B DC 16 ? ? "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 98.98 109.40 -10.42 0.80 N 61 1 P B DC 16 ? ? "O5'" B DC 16 ? ? "C5'" B DC 16 ? ? 111.02 120.90 -9.88 1.60 N 62 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? "C2'" B DC 16 ? ? 112.19 106.80 5.39 0.50 N 63 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 113.03 108.30 4.73 0.30 N 64 1 "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? "C4'" B DC 17 ? ? 100.41 109.40 -8.99 0.80 N 65 1 "O4'" B DC 17 ? ? "C4'" B DC 17 ? ? "C3'" B DC 17 ? ? 98.23 104.50 -6.27 0.40 N 66 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 113.04 108.30 4.74 0.30 N 67 1 "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 102.97 109.40 -6.43 0.80 N 68 1 P B DG 18 ? ? "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? 131.91 120.90 11.01 1.60 N 69 1 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 96.11 102.40 -6.29 0.80 N 70 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.44 108.30 2.14 0.30 N 71 1 N9 B DG 18 ? ? C4 B DG 18 ? ? C5 B DG 18 ? ? 107.81 105.40 2.41 0.40 N 72 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 110.29 119.60 -9.31 1.50 N 73 1 "O5'" B DC 19 ? ? P B DC 19 ? ? OP1 B DC 19 ? ? 119.94 110.70 9.24 1.20 N 74 1 "O5'" B DC 19 ? ? "C5'" B DC 19 ? ? "C4'" B DC 19 ? ? 126.32 111.00 15.32 2.50 N 75 1 P B DC 19 ? ? "O5'" B DC 19 ? ? "C5'" B DC 19 ? ? 141.57 120.90 20.67 1.60 N 76 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.93 108.30 3.63 0.30 N 77 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 118.07 121.90 -3.83 0.40 N 78 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 108.58 119.60 -11.02 1.50 N 79 1 P B DG 20 ? ? "O5'" B DG 20 ? ? "C5'" B DG 20 ? ? 107.43 120.90 -13.47 1.60 N 80 1 "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? "O4'" B DG 20 ? ? 117.67 109.80 7.87 1.10 N 81 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 115.40 108.30 7.10 0.30 N 82 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 115.36 111.50 3.86 0.50 N 83 1 N3 B DG 20 ? ? C2 B DG 20 ? ? N2 B DG 20 ? ? 114.94 119.90 -4.96 0.70 N 84 1 P B DG 21 ? ? "O5'" B DG 21 ? ? "C5'" B DG 21 ? ? 109.78 120.90 -11.12 1.60 N 85 1 C5 B DG 21 ? ? C6 B DG 21 ? ? O6 B DG 21 ? ? 123.39 128.60 -5.21 0.60 N 86 1 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 129.21 119.70 9.51 1.20 Y 87 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 100.96 109.40 -8.44 0.80 N 88 1 P B DG 22 ? ? "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? 109.35 120.90 -11.55 1.60 N 89 1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 97.41 102.20 -4.79 0.70 N 90 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 115.85 108.30 7.55 0.30 N 91 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.56 128.60 -4.04 0.60 N 92 1 OP1 B DG 23 ? ? P B DG 23 ? ? OP2 B DG 23 ? ? 109.82 119.60 -9.78 1.50 N 93 1 "C5'" B DG 23 ? ? "C4'" B DG 23 ? ? "O4'" B DG 23 ? ? 117.25 109.80 7.45 1.10 N 94 1 "C3'" B DG 23 ? ? "C2'" B DG 23 ? ? "C1'" B DG 23 ? ? 95.89 102.40 -6.51 0.80 N 95 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 122.55 108.30 14.25 0.30 N 96 1 C6 B DG 23 ? ? N1 B DG 23 ? ? C2 B DG 23 ? ? 120.27 125.10 -4.83 0.60 N 97 1 C5 B DG 23 ? ? C6 B DG 23 ? ? N1 B DG 23 ? ? 116.18 111.50 4.68 0.50 N 98 1 C8 B DG 23 ? ? N9 B DG 23 ? ? C4 B DG 23 ? ? 103.47 106.40 -2.93 0.40 N 99 1 N3 B DG 23 ? ? C2 B DG 23 ? ? N2 B DG 23 ? ? 114.19 119.90 -5.71 0.70 N 100 1 "C3'" B DG 23 ? ? "O3'" B DG 23 ? ? P B DG 24 ? ? 154.98 119.70 35.28 1.20 Y 101 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 96.76 109.40 -12.64 0.80 N 102 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 117.78 108.30 9.48 0.30 N 103 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 116.29 119.90 -3.61 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 SPM N1 N N N 75 SPM C2 C N N 76 SPM C3 C N N 77 SPM C4 C N N 78 SPM N5 N N N 79 SPM C6 C N N 80 SPM C7 C N N 81 SPM C8 C N N 82 SPM C9 C N N 83 SPM N10 N N N 84 SPM C11 C N N 85 SPM C12 C N N 86 SPM C13 C N N 87 SPM N14 N N N 88 SPM HN11 H N N 89 SPM HN12 H N N 90 SPM H21 H N N 91 SPM H22 H N N 92 SPM H31 H N N 93 SPM H32 H N N 94 SPM H41 H N N 95 SPM H42 H N N 96 SPM HN5 H N N 97 SPM H61 H N N 98 SPM H62 H N N 99 SPM H71 H N N 100 SPM H72 H N N 101 SPM H81 H N N 102 SPM H82 H N N 103 SPM H91 H N N 104 SPM H92 H N N 105 SPM HN0 H N N 106 SPM H111 H N N 107 SPM H112 H N N 108 SPM H121 H N N 109 SPM H122 H N N 110 SPM H131 H N N 111 SPM H132 H N N 112 SPM HN41 H N N 113 SPM HN42 H N N 114 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 SPM N1 C2 sing N N 77 SPM N1 HN11 sing N N 78 SPM N1 HN12 sing N N 79 SPM C2 C3 sing N N 80 SPM C2 H21 sing N N 81 SPM C2 H22 sing N N 82 SPM C3 C4 sing N N 83 SPM C3 H31 sing N N 84 SPM C3 H32 sing N N 85 SPM C4 N5 sing N N 86 SPM C4 H41 sing N N 87 SPM C4 H42 sing N N 88 SPM N5 C6 sing N N 89 SPM N5 HN5 sing N N 90 SPM C6 C7 sing N N 91 SPM C6 H61 sing N N 92 SPM C6 H62 sing N N 93 SPM C7 C8 sing N N 94 SPM C7 H71 sing N N 95 SPM C7 H72 sing N N 96 SPM C8 C9 sing N N 97 SPM C8 H81 sing N N 98 SPM C8 H82 sing N N 99 SPM C9 N10 sing N N 100 SPM C9 H91 sing N N 101 SPM C9 H92 sing N N 102 SPM N10 C11 sing N N 103 SPM N10 HN0 sing N N 104 SPM C11 C12 sing N N 105 SPM C11 H111 sing N N 106 SPM C11 H112 sing N N 107 SPM C12 C13 sing N N 108 SPM C12 H121 sing N N 109 SPM C12 H122 sing N N 110 SPM C13 N14 sing N N 111 SPM C13 H131 sing N N 112 SPM C13 H132 sing N N 113 SPM N14 HN41 sing N N 114 SPM N14 HN42 sing N N 115 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D47 'double helix' 2D47 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -1.392 -0.721 -2.115 39.206 22.935 -20.855 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.214 -0.036 -0.789 20.737 -5.922 2.998 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.128 -0.117 -0.430 14.250 -13.792 0.448 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DC 4 1_555 B DG 9 1_555 0.208 -0.178 -0.516 7.142 -12.024 -0.421 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DC 5 1_555 B DG 8 1_555 -0.178 -0.171 0.924 -4.516 -8.721 -2.961 5 A_DC5:DG20_B A 5 ? B 20 ? 19 1 1 A DG 6 1_555 B DC 7 1_555 0.461 -0.121 -0.463 -4.467 11.753 -1.889 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DC 7 1_555 B DG 6 1_555 -0.346 -0.168 -0.019 9.799 -21.155 2.025 7 A_DC7:DG18_B A 7 ? B 18 ? 19 1 1 A DG 8 1_555 B DC 5 1_555 0.115 -0.312 1.806 29.436 9.031 6.603 8 A_DG8:DC17_B A 8 ? B 17 ? 19 1 1 A DG 9 1_555 B DC 4 1_555 -0.099 -0.347 1.065 -5.083 -2.610 -4.577 9 A_DG9:DC16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.016 -0.068 1.012 22.245 19.005 2.369 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DG 11 1_555 B DC 2 1_555 0.310 -0.055 0.543 0.156 -7.427 -3.445 11 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.261 -0.115 -0.367 -20.574 10.747 -1.788 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 0.906 -1.587 4.464 -11.582 2.502 45.088 -2.286 -2.434 4.038 3.197 14.804 46.541 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DC 3 1_555 B DG 10 1_555 -0.474 -1.698 3.121 -3.691 25.947 25.068 -5.525 0.368 1.032 46.539 6.620 36.114 2 AA_DC2DC3:DG22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DC 4 1_555 B DG 9 1_555 -0.333 -1.574 3.922 -2.718 1.126 30.245 -3.274 -0.017 3.877 2.152 5.194 30.384 3 AA_DC3DC4:DG21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DC 5 1_555 B DG 8 1_555 -0.790 -1.646 3.499 -12.776 5.418 32.864 -3.544 -0.715 3.270 9.088 21.430 35.599 4 AA_DC4DC5:DG20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DC 5 1_555 B DG 8 1_555 A DG 6 1_555 B DC 7 1_555 0.544 -2.161 3.506 10.489 10.612 30.156 -5.475 0.772 2.657 19.004 -18.784 33.569 5 AA_DC5DG6:DC19DG20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DC 7 1_555 B DG 6 1_555 -0.259 -2.545 2.833 -3.464 14.263 19.194 -8.928 -0.069 0.806 36.621 8.894 24.121 6 AA_DG6DC7:DG18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DC 7 1_555 B DG 6 1_555 A DG 8 1_555 B DC 5 1_555 1.547 -1.728 2.567 -14.013 -0.388 39.369 -2.398 -3.225 1.946 -0.555 20.044 41.697 7 AA_DC7DG8:DC17DG18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DG 8 1_555 B DC 5 1_555 A DG 9 1_555 B DC 4 1_555 -0.749 -2.522 4.103 9.269 7.151 27.004 -6.697 3.714 2.943 14.481 -18.770 29.390 8 AA_DG8DG9:DC16DC17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DG 9 1_555 B DC 4 1_555 A DG 10 1_555 B DC 3 1_555 1.160 -2.351 2.086 1.264 -5.622 28.357 -3.816 -2.122 2.543 -11.328 -2.546 28.925 9 AA_DG9DG10:DC15DC16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DG 11 1_555 B DC 2 1_555 1.203 -1.398 3.838 12.287 6.381 35.433 -3.128 0.036 3.740 10.024 -19.304 37.960 10 AA_DG10DG11:DC14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DG 12 1_555 B DC 1 1_555 0.112 -1.775 3.886 11.676 11.928 31.300 -4.866 1.720 2.903 20.394 -19.964 35.374 11 AA_DG11DG12:DC13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 2D47 _atom_sites.fract_transf_matrix[1][1] 0.022124 _atom_sites.fract_transf_matrix[1][2] 0.012773 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025546 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_