HEADER TRANSFERASE 24-OCT-05 2D4W TITLE CRYSTAL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. NT3060 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLULOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 40001; SOURCE 4 STRAIN: NT3060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA AND BETA PROTEIN, RIBONUCLEASE H-LIKE MOTIF, ACTIN-LIKE ATPASE KEYWDS 2 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.IMADA,T.TAMURA,K.NAMBA,K.INAGAKI REVDAT 3 13-MAR-24 2D4W 1 REMARK REVDAT 2 24-FEB-09 2D4W 1 VERSN REVDAT 1 14-NOV-06 2D4W 0 JRNL AUTH K.IMADA,T.TAMURA,K.INAGAKI JRNL TITL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. NT3060 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7948 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10816 ; 1.593 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1004 ; 3.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1328 ;17.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1192 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6106 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4119 ; 0.241 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 686 ; 0.168 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.384 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.236 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4958 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7938 ; 1.581 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2990 ; 2.619 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2878 ; 4.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000024990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.130 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIROAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27-37% MPD, 0.1M CITRATE, PH 4.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.85750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.92875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 146.78625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.92875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 146.78625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.85750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 505 REMARK 465 GLN B 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C5 MPD B 1001 O HOH B 3167 2.01 REMARK 500 C5 MPD A 1 O HOH A 2128 2.06 REMARK 500 O4 MPD B 3001 O HOH B 3051 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 246 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 340 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 340 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 361 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 431 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 464 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 195 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 330 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 340 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 461 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 83 -28.17 69.62 REMARK 500 ASP A 117 94.65 -31.72 REMARK 500 GLU A 118 88.51 61.74 REMARK 500 MET A 192 2.20 85.20 REMARK 500 GLU A 224 159.60 176.12 REMARK 500 TYR A 293 166.67 179.06 REMARK 500 THR A 311 -86.17 -125.06 REMARK 500 PHE A 354 -111.53 -113.02 REMARK 500 LEU A 405 119.56 -37.38 REMARK 500 LYS A 470 -179.95 -172.32 REMARK 500 SER A 475 -12.37 -143.49 REMARK 500 GLU B 83 -20.57 60.16 REMARK 500 ASN B 163 178.14 -59.10 REMARK 500 MET B 192 -4.77 80.95 REMARK 500 LEU B 199 35.48 70.26 REMARK 500 ALA B 298 153.55 -49.23 REMARK 500 THR B 311 -82.87 -122.28 REMARK 500 PHE B 354 -145.52 -129.43 REMARK 500 GLU B 407 140.54 -175.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 3001 DBREF 2D4W A 2 505 PDB 2D4W 2D4W 2 505 DBREF 2D4W B 2 505 PDB 2D4W 2D4W 2 505 SEQRES 1 A 504 ALA ASP TYR VAL LEU ALA ILE ASP GLN GLY THR THR SER SEQRES 2 A 504 SER ARG ALA ILE VAL PHE ASP HIS SER GLY GLU ILE TYR SEQRES 3 A 504 SER THR GLY GLN LEU GLU HIS ASP GLN ILE PHE PRO ARG SEQRES 4 A 504 ALA GLY TRP VAL GLU HIS ASN PRO GLU GLN ILE TRP ASN SEQRES 5 A 504 ASN VAL ARG GLU VAL VAL GLY LEU ALA LEU THR ARG GLY SEQRES 6 A 504 ASN LEU THR HIS GLU ASP ILE ALA ALA VAL GLY ILE THR SEQRES 7 A 504 ASN GLN ARG GLU THR ALA VAL VAL TRP ASP LYS THR THR SEQRES 8 A 504 GLY LYS PRO VAL TYR ASN ALA ILE VAL TRP GLN ASP THR SEQRES 9 A 504 ARG THR GLN LYS ILE VAL ASP GLU LEU GLY GLY ASP GLU SEQRES 10 A 504 GLY ALA GLU LYS TYR LYS SER ILE VAL GLY LEU PRO LEU SEQRES 11 A 504 ALA THR TYR PHE SER GLY PRO LYS ILE LYS TRP ILE LEU SEQRES 12 A 504 ASP ASN VAL GLU GLY ALA ARG GLU LYS ALA GLU LYS GLY SEQRES 13 A 504 ASP LEU LEU PHE GLY ASN THR ASP THR TRP VAL LEU TRP SEQRES 14 A 504 ASN MET THR GLY GLY THR GLU GLY GLY VAL HIS VAL THR SEQRES 15 A 504 ASP VAL THR ASN ALA SER ARG THR MET LEU MET ASP LEU SEQRES 16 A 504 ASP THR LEU SER TRP ARG GLU ASP ILE ALA ALA ASP MET SEQRES 17 A 504 GLY ILE PRO LEU SER MET LEU PRO ASP ILE ARG SER SER SEQRES 18 A 504 SER GLU VAL TYR GLY HIS GLY ARG PRO ARG GLY LEU VAL SEQRES 19 A 504 PRO GLY VAL PRO ILE ALA GLY ILE LEU GLY ASP GLN GLN SEQRES 20 A 504 ALA ALA THR PHE GLY GLN ALA CYS PHE GLU VAL GLY GLN SEQRES 21 A 504 ALA LYS ASN THR TYR GLY THR GLY ASN PHE LEU LEU LEU SEQRES 22 A 504 ASN THR GLY THR GLU LYS VAL MET SER LYS ASN GLY LEU SEQRES 23 A 504 LEU THR THR VAL CYS TYR LYS ILE GLY ASP ALA PRO ALA SEQRES 24 A 504 VAL TYR ALA LEU GLU GLY SER ILE ALA VAL THR GLY SER SEQRES 25 A 504 LEU VAL GLN TRP LEU ARG ASP ASN LEU GLY MET PHE GLU SEQRES 26 A 504 ASP ALA PRO ASP VAL GLU TRP LEU ALA GLY LYS VAL GLN SEQRES 27 A 504 ASP ASN GLY GLY ALA TYR PHE VAL PRO ALA PHE SER GLY SEQRES 28 A 504 LEU PHE ALA PRO TYR TRP ARG PRO ASP ALA ARG GLY ALA SEQRES 29 A 504 LEU VAL GLY LEU THR ARG TYR VAL ASN ARG ASN HIS ILE SEQRES 30 A 504 ALA ARG ALA ALA LEU GLU ALA THR ALA PHE GLN SER ARG SEQRES 31 A 504 GLU VAL VAL ASP ALA MET ASN ALA ASP SER GLY VAL ASP SEQRES 32 A 504 LEU THR GLU LEU ARG VAL ASP GLY GLY MET VAL ALA ASN SEQRES 33 A 504 GLU LEU LEU MET GLN PHE GLN ALA ASP GLN LEU GLY VAL SEQRES 34 A 504 ASP VAL VAL ARG PRO LYS VAL ALA GLU THR THR ALA LEU SEQRES 35 A 504 GLY ALA ALA TYR ALA ALA GLY ILE ALA VAL GLY PHE TRP SEQRES 36 A 504 LYS GLY GLU GLN ASP VAL ILE ASP ASN TRP ALA GLU ASP SEQRES 37 A 504 LYS ARG TRP SER PRO SER MET GLU SER GLY GLU ARG GLU SEQRES 38 A 504 ARG LEU TYR ARG ASN TRP LYS LYS ALA VAL THR LYS THR SEQRES 39 A 504 MET GLU TRP VAL ASP GLU ASP VAL GLU GLN SEQRES 1 B 504 ALA ASP TYR VAL LEU ALA ILE ASP GLN GLY THR THR SER SEQRES 2 B 504 SER ARG ALA ILE VAL PHE ASP HIS SER GLY GLU ILE TYR SEQRES 3 B 504 SER THR GLY GLN LEU GLU HIS ASP GLN ILE PHE PRO ARG SEQRES 4 B 504 ALA GLY TRP VAL GLU HIS ASN PRO GLU GLN ILE TRP ASN SEQRES 5 B 504 ASN VAL ARG GLU VAL VAL GLY LEU ALA LEU THR ARG GLY SEQRES 6 B 504 ASN LEU THR HIS GLU ASP ILE ALA ALA VAL GLY ILE THR SEQRES 7 B 504 ASN GLN ARG GLU THR ALA VAL VAL TRP ASP LYS THR THR SEQRES 8 B 504 GLY LYS PRO VAL TYR ASN ALA ILE VAL TRP GLN ASP THR SEQRES 9 B 504 ARG THR GLN LYS ILE VAL ASP GLU LEU GLY GLY ASP GLU SEQRES 10 B 504 GLY ALA GLU LYS TYR LYS SER ILE VAL GLY LEU PRO LEU SEQRES 11 B 504 ALA THR TYR PHE SER GLY PRO LYS ILE LYS TRP ILE LEU SEQRES 12 B 504 ASP ASN VAL GLU GLY ALA ARG GLU LYS ALA GLU LYS GLY SEQRES 13 B 504 ASP LEU LEU PHE GLY ASN THR ASP THR TRP VAL LEU TRP SEQRES 14 B 504 ASN MET THR GLY GLY THR GLU GLY GLY VAL HIS VAL THR SEQRES 15 B 504 ASP VAL THR ASN ALA SER ARG THR MET LEU MET ASP LEU SEQRES 16 B 504 ASP THR LEU SER TRP ARG GLU ASP ILE ALA ALA ASP MET SEQRES 17 B 504 GLY ILE PRO LEU SER MET LEU PRO ASP ILE ARG SER SER SEQRES 18 B 504 SER GLU VAL TYR GLY HIS GLY ARG PRO ARG GLY LEU VAL SEQRES 19 B 504 PRO GLY VAL PRO ILE ALA GLY ILE LEU GLY ASP GLN GLN SEQRES 20 B 504 ALA ALA THR PHE GLY GLN ALA CYS PHE GLU VAL GLY GLN SEQRES 21 B 504 ALA LYS ASN THR TYR GLY THR GLY ASN PHE LEU LEU LEU SEQRES 22 B 504 ASN THR GLY THR GLU LYS VAL MET SER LYS ASN GLY LEU SEQRES 23 B 504 LEU THR THR VAL CYS TYR LYS ILE GLY ASP ALA PRO ALA SEQRES 24 B 504 VAL TYR ALA LEU GLU GLY SER ILE ALA VAL THR GLY SER SEQRES 25 B 504 LEU VAL GLN TRP LEU ARG ASP ASN LEU GLY MET PHE GLU SEQRES 26 B 504 ASP ALA PRO ASP VAL GLU TRP LEU ALA GLY LYS VAL GLN SEQRES 27 B 504 ASP ASN GLY GLY ALA TYR PHE VAL PRO ALA PHE SER GLY SEQRES 28 B 504 LEU PHE ALA PRO TYR TRP ARG PRO ASP ALA ARG GLY ALA SEQRES 29 B 504 LEU VAL GLY LEU THR ARG TYR VAL ASN ARG ASN HIS ILE SEQRES 30 B 504 ALA ARG ALA ALA LEU GLU ALA THR ALA PHE GLN SER ARG SEQRES 31 B 504 GLU VAL VAL ASP ALA MET ASN ALA ASP SER GLY VAL ASP SEQRES 32 B 504 LEU THR GLU LEU ARG VAL ASP GLY GLY MET VAL ALA ASN SEQRES 33 B 504 GLU LEU LEU MET GLN PHE GLN ALA ASP GLN LEU GLY VAL SEQRES 34 B 504 ASP VAL VAL ARG PRO LYS VAL ALA GLU THR THR ALA LEU SEQRES 35 B 504 GLY ALA ALA TYR ALA ALA GLY ILE ALA VAL GLY PHE TRP SEQRES 36 B 504 LYS GLY GLU GLN ASP VAL ILE ASP ASN TRP ALA GLU ASP SEQRES 37 B 504 LYS ARG TRP SER PRO SER MET GLU SER GLY GLU ARG GLU SEQRES 38 B 504 ARG LEU TYR ARG ASN TRP LYS LYS ALA VAL THR LYS THR SEQRES 39 B 504 MET GLU TRP VAL ASP GLU ASP VAL GLU GLN HET MPD A 1 8 HET MPD A2001 8 HET MPD B1001 8 HET MPD B3001 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MPD 4(C6 H14 O2) FORMUL 7 HOH *353(H2 O) HELIX 1 1 ASN A 47 GLY A 66 1 20 HELIX 2 2 THR A 69 GLU A 71 5 3 HELIX 3 3 THR A 107 GLY A 116 1 10 HELIX 4 4 GLY A 119 LYS A 122 5 4 HELIX 5 5 TYR A 123 GLY A 128 1 6 HELIX 6 6 PHE A 135 VAL A 147 1 13 HELIX 7 7 GLY A 149 GLY A 157 1 9 HELIX 8 8 ASN A 163 THR A 173 1 11 HELIX 9 9 VAL A 185 SER A 189 1 5 HELIX 10 10 ARG A 202 MET A 209 1 8 HELIX 11 11 PRO A 212 LEU A 216 5 5 HELIX 12 12 ASP A 246 GLN A 254 1 9 HELIX 13 13 GLY A 312 ASN A 321 1 10 HELIX 14 14 VAL A 331 GLY A 336 1 6 HELIX 15 15 ASN A 374 GLY A 402 1 29 HELIX 16 16 GLY A 412 ALA A 416 5 5 HELIX 17 17 ASN A 417 GLY A 429 1 13 HELIX 18 18 GLU A 439 VAL A 453 1 15 HELIX 19 19 GLY A 458 TRP A 466 1 9 HELIX 20 20 GLU A 477 GLU A 501 1 25 HELIX 21 21 ASN B 47 GLY B 66 1 20 HELIX 22 22 THR B 107 GLY B 115 1 9 HELIX 23 23 TYR B 123 GLY B 128 1 6 HELIX 24 24 PHE B 135 VAL B 147 1 13 HELIX 25 25 GLY B 149 GLY B 157 1 9 HELIX 26 26 ASN B 163 THR B 173 1 11 HELIX 27 27 VAL B 185 SER B 189 1 5 HELIX 28 28 ARG B 202 MET B 209 1 8 HELIX 29 29 ASP B 246 GLN B 254 1 9 HELIX 30 30 GLY B 312 ASN B 321 1 10 HELIX 31 31 VAL B 331 GLY B 336 1 6 HELIX 32 32 ASN B 374 GLY B 402 1 29 HELIX 33 33 MET B 414 ALA B 416 5 3 HELIX 34 34 ASN B 417 GLY B 429 1 13 HELIX 35 35 GLU B 439 VAL B 453 1 15 HELIX 36 36 GLY B 458 TRP B 466 1 9 HELIX 37 37 GLU B 477 GLU B 501 1 25 SHEET 1 A 6 ILE A 26 GLU A 33 0 SHEET 2 A 6 SER A 14 PHE A 20 -1 N VAL A 19 O TYR A 27 SHEET 3 A 6 TYR A 4 GLN A 10 -1 N ASP A 9 O ARG A 16 SHEET 4 A 6 ILE A 73 ASN A 80 1 O ALA A 74 N TYR A 4 SHEET 5 A 6 PRO A 239 GLY A 245 1 O GLY A 242 N ILE A 78 SHEET 6 A 6 SER A 223 HIS A 228 -1 N GLY A 227 O ILE A 240 SHEET 1 B 2 GLU A 45 HIS A 46 0 SHEET 2 B 2 ALA A 99 ILE A 100 -1 O ALA A 99 N HIS A 46 SHEET 1 C 2 VAL A 86 ASP A 89 0 SHEET 2 C 2 LEU A 159 GLY A 162 -1 O LEU A 160 N TRP A 88 SHEET 1 D 2 VAL A 182 ASP A 184 0 SHEET 2 D 2 ASP A 218 ARG A 220 1 O ARG A 220 N THR A 183 SHEET 1 E 2 MET A 194 ASP A 195 0 SHEET 2 E 2 SER A 200 TRP A 201 -1 O SER A 200 N ASP A 195 SHEET 1 F 7 LEU A 288 TYR A 293 0 SHEET 2 F 7 VAL A 301 ILE A 308 -1 O VAL A 301 N TYR A 293 SHEET 3 F 7 ASN A 270 ASN A 275 -1 N ASN A 270 O ILE A 308 SHEET 4 F 7 GLN A 261 TYR A 266 -1 N THR A 265 O PHE A 271 SHEET 5 F 7 GLU A 407 ASP A 411 1 O ARG A 409 N ALA A 262 SHEET 6 F 7 ASP A 431 PRO A 435 1 O VAL A 433 N LEU A 408 SHEET 7 F 7 GLU A 468 TRP A 472 -1 O ASP A 469 N ARG A 434 SHEET 1 G 4 TYR A 345 VAL A 347 0 SHEET 2 G 4 GLY A 364 LEU A 369 -1 O ALA A 365 N VAL A 347 SHEET 3 G 4 GLY B 364 LEU B 369 -1 O GLY B 364 N LEU A 369 SHEET 4 G 4 TYR B 345 VAL B 347 -1 N TYR B 345 O VAL B 367 SHEET 1 H 6 ILE B 26 GLU B 33 0 SHEET 2 H 6 SER B 14 PHE B 20 -1 N VAL B 19 O TYR B 27 SHEET 3 H 6 TYR B 4 GLN B 10 -1 N ALA B 7 O ILE B 18 SHEET 4 H 6 ILE B 73 ASN B 80 1 O ALA B 74 N TYR B 4 SHEET 5 H 6 PRO B 239 GLY B 245 1 O GLY B 242 N ILE B 78 SHEET 6 H 6 SER B 223 HIS B 228 -1 N TYR B 226 O ILE B 240 SHEET 1 I 2 GLU B 45 HIS B 46 0 SHEET 2 I 2 ALA B 99 ILE B 100 -1 O ALA B 99 N HIS B 46 SHEET 1 J 2 VAL B 86 ASP B 89 0 SHEET 2 J 2 LEU B 159 GLY B 162 -1 O LEU B 160 N TRP B 88 SHEET 1 K 2 VAL B 182 ASP B 184 0 SHEET 2 K 2 ASP B 218 ARG B 220 1 O ARG B 220 N THR B 183 SHEET 1 L 2 MET B 194 ASP B 195 0 SHEET 2 L 2 SER B 200 TRP B 201 -1 O SER B 200 N ASP B 195 SHEET 1 M 7 LEU B 288 TYR B 293 0 SHEET 2 M 7 VAL B 301 ILE B 308 -1 O GLU B 305 N LEU B 288 SHEET 3 M 7 ASN B 270 GLY B 277 -1 N GLY B 277 O TYR B 302 SHEET 4 M 7 GLN B 261 TYR B 266 -1 N THR B 265 O PHE B 271 SHEET 5 M 7 GLU B 407 GLY B 412 1 O ARG B 409 N ALA B 262 SHEET 6 M 7 ASP B 431 PRO B 435 1 O ASP B 431 N LEU B 408 SHEET 7 M 7 GLU B 468 TRP B 472 -1 O TRP B 472 N VAL B 432 CISPEP 1 ALA A 355 PRO A 356 0 -9.06 CISPEP 2 ALA B 355 PRO B 356 0 1.04 SITE 1 AC1 7 ARG A 82 GLU A 83 ARG A 190 ASP A 246 SITE 2 AC1 7 GLN A 247 PHE A 271 HOH A2128 SITE 1 AC2 8 ARG B 82 GLU B 83 TRP B 102 ARG B 190 SITE 2 AC2 8 ASP B 246 PHE B 271 GLU B 305 HOH B3167 SITE 1 AC3 7 VAL A 310 TRP A 317 PRO A 348 ALA A 349 SITE 2 AC3 7 HOH A2105 LEU B 369 THR B 370 SITE 1 AC4 9 LEU A 369 ARG A 371 VAL B 310 LEU B 314 SITE 2 AC4 9 TRP B 317 PRO B 348 ALA B 349 HOH B3051 SITE 3 AC4 9 HOH B3064 CRYST1 105.430 105.430 195.715 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005109 0.00000