HEADER SIGNALING PROTEIN 01-NOV-05 2D5G TITLE STRUCTURE OF UBIQUITIN FOLD PROTEIN R767E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: AXIN-1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: DIX DOMAIN; COMPND 5 SYNONYM: AXIS INHIBITION PROTEIN 1, RAXIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALC2 KEYWDS UBIQUITIN FOLD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SHIBATA,Y.HIGUCHI REVDAT 3 10-NOV-21 2D5G 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D5G 1 VERSN REVDAT 1 01-NOV-06 2D5G 0 JRNL AUTH N.SHIBATA,T.HANAMURA,R.YAMAMOTO,Y.UEDA,H.YAMAMOTO,A.KIKUCHI, JRNL AUTH 2 Y.HIGUCHI JRNL TITL STRUCTURE OF UBIQUITIN FOLD PROTEIN R767E MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 321432.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 21930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2081 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1868 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 3.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 7.710 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 12.320; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 16.290; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 21.350; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 66.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PCMB.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PCMB.TO REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 4 REMARK 4 2D5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21930 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, TRIS, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.77500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.24316 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.47667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 62.77500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.24316 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.47667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 62.77500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.24316 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.47667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.48633 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.95333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 72.48633 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.95333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 72.48633 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.95333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 748 REMARK 465 PRO A 749 REMARK 465 PRO C 748 REMARK 465 PRO C 749 REMARK 465 PRO D 748 REMARK 465 PRO D 749 REMARK 465 PRO E 748 REMARK 465 PRO E 749 REMARK 465 CYS E 750 REMARK 465 ASP E 751 REMARK 465 SER E 752 REMARK 465 PRO F 748 REMARK 465 PRO F 749 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 749 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO B 749 C - N - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 GLU D 800 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 760 44.99 21.16 REMARK 500 GLU A 762 124.05 -13.56 REMARK 500 ARG A 773 -29.24 72.06 REMARK 500 SER A 798 118.59 -160.16 REMARK 500 GLU A 822 -5.12 72.61 REMARK 500 PRO B 749 127.18 11.82 REMARK 500 ASP B 751 72.10 79.76 REMARK 500 SER B 752 126.31 160.80 REMARK 500 CYS B 760 5.49 49.67 REMARK 500 ARG B 773 -28.14 63.14 REMARK 500 LYS B 796 161.62 178.71 REMARK 500 CYS B 803 22.94 34.19 REMARK 500 GLU B 822 -10.99 75.15 REMARK 500 CYS C 760 47.07 26.27 REMARK 500 ARG C 773 -17.32 50.45 REMARK 500 SER C 798 116.38 -165.62 REMARK 500 CYS C 803 16.89 -140.45 REMARK 500 GLU C 822 -5.99 74.26 REMARK 500 ASP D 751 -140.58 77.30 REMARK 500 CYS D 760 105.52 -12.87 REMARK 500 ARG D 773 1.41 57.41 REMARK 500 ALA D 774 83.90 -172.80 REMARK 500 LYS D 796 128.85 -170.74 REMARK 500 ASP D 799 88.10 0.17 REMARK 500 GLU D 800 -20.81 67.96 REMARK 500 PHE D 801 -135.58 -159.02 REMARK 500 ASP D 813 -54.15 -25.69 REMARK 500 GLU D 822 -6.02 75.80 REMARK 500 CYS E 760 18.40 54.72 REMARK 500 ARG E 773 -110.07 -71.15 REMARK 500 LYS E 796 114.39 -173.39 REMARK 500 ASP E 802 -80.68 -68.79 REMARK 500 GLU E 822 -5.69 73.37 REMARK 500 CYS F 760 15.53 42.01 REMARK 500 ARG F 773 20.86 45.94 REMARK 500 ALA F 774 95.88 -177.80 REMARK 500 GLU F 822 -6.63 75.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 771 GLY A 772 149.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 793 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG D 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG E 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG F 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG F 610 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WSP RELATED DB: PDB DBREF 2D5G A 748 832 UNP O70239 AXN1_RAT 743 827 DBREF 2D5G B 748 832 UNP O70239 AXN1_RAT 743 827 DBREF 2D5G C 748 832 UNP O70239 AXN1_RAT 743 827 DBREF 2D5G D 748 832 UNP O70239 AXN1_RAT 743 827 DBREF 2D5G E 748 832 UNP O70239 AXN1_RAT 743 827 DBREF 2D5G F 748 832 UNP O70239 AXN1_RAT 743 827 SEQADV 2D5G GLU A 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQADV 2D5G GLU B 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQADV 2D5G GLU C 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQADV 2D5G GLU D 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQADV 2D5G GLU E 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQADV 2D5G GLU F 767 UNP O70239 ARG 762 ENGINEERED MUTATION SEQRES 1 A 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 A 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 A 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 A 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 A 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 A 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 A 85 GLY LYS VAL GLU LYS VAL ASP SEQRES 1 B 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 B 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 B 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 B 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 B 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 B 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 B 85 GLY LYS VAL GLU LYS VAL ASP SEQRES 1 C 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 C 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 C 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 C 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 C 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 C 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 C 85 GLY LYS VAL GLU LYS VAL ASP SEQRES 1 D 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 D 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 D 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 D 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 D 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 D 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 D 85 GLY LYS VAL GLU LYS VAL ASP SEQRES 1 E 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 E 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 E 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 E 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 E 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 E 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 E 85 GLY LYS VAL GLU LYS VAL ASP SEQRES 1 F 85 PRO PRO CYS ASP SER ILE VAL VAL ALA TYR TYR PHE CYS SEQRES 2 F 85 GLY GLU PRO ILE PRO TYR GLU THR LEU VAL ARG GLY ARG SEQRES 3 F 85 ALA VAL THR LEU GLY GLN PHE LYS GLU LEU LEU THR LYS SEQRES 4 F 85 LYS GLY SER TYR ARG TYR TYR PHE LYS LYS VAL SER ASP SEQRES 5 F 85 GLU PHE ASP CYS GLY VAL VAL PHE GLU GLU VAL ARG GLU SEQRES 6 F 85 ASP GLU ALA ILE LEU PRO VAL PHE GLU GLU LYS ILE ILE SEQRES 7 F 85 GLY LYS VAL GLU LYS VAL ASP HET HG A 601 1 HET HG A 602 1 HET HG B 603 1 HET HG B 604 1 HET HG C 605 1 HET HG C 606 1 HET HG D 607 1 HET HG E 608 1 HET HG F 609 1 HET HG F 610 1 HETNAM HG MERCURY (II) ION FORMUL 7 HG 10(HG 2+) HELIX 1 1 THR A 776 GLU A 782 1 7 HELIX 2 2 THR B 776 GLU B 782 1 7 HELIX 3 3 THR C 776 GLU C 782 1 7 HELIX 4 4 THR D 776 GLU D 782 1 7 HELIX 5 5 THR E 776 GLU E 782 1 7 HELIX 6 6 THR F 776 GLU F 782 1 7 SHEET 1 A30 TYR B 766 ARG B 771 0 SHEET 2 A30 SER B 752 PHE B 759 -1 N TYR B 757 O TYR B 766 SHEET 3 A30 LYS B 823 LYS B 830 1 O GLY B 826 N TYR B 758 SHEET 4 A30 TYR B 790 VAL B 797 -1 N LYS B 795 O ILE B 825 SHEET 5 A30 VAL B 805 GLU B 809 -1 O VAL B 806 N LYS B 796 SHEET 6 A30 TYR A 766 ARG A 771 1 N GLU A 767 O PHE B 807 SHEET 7 A30 SER A 752 PHE A 759 -1 N VAL A 755 O THR A 768 SHEET 8 A30 LYS A 823 LYS A 830 1 O GLY A 826 N TYR A 758 SHEET 9 A30 TYR A 790 VAL A 797 -1 N LYS A 795 O ILE A 825 SHEET 10 A30 VAL A 805 GLU A 809 -1 O GLU A 808 N PHE A 794 SHEET 11 A30 TYR C 766 ARG C 771 1 O GLU C 767 N GLU A 809 SHEET 12 A30 SER C 752 PHE C 759 -1 N VAL C 755 O THR C 768 SHEET 13 A30 LYS C 823 LYS C 830 1 O GLY C 826 N TYR C 758 SHEET 14 A30 TYR C 790 VAL C 797 -1 N ARG C 791 O GLU C 829 SHEET 15 A30 VAL C 805 VAL C 810 -1 O GLU C 808 N PHE C 794 SHEET 16 A30 TYR D 766 VAL D 770 1 O GLU D 767 N PHE C 807 SHEET 17 A30 ILE D 753 PHE D 759 -1 N ILE D 753 O VAL D 770 SHEET 18 A30 LYS D 823 LYS D 830 1 O GLY D 826 N TYR D 758 SHEET 19 A30 TYR D 790 SER D 798 -1 N ARG D 791 O GLU D 829 SHEET 20 A30 PHE D 801 VAL D 810 -1 O PHE D 801 N SER D 798 SHEET 21 A30 TYR E 766 LEU E 769 1 O GLU E 767 N PHE D 807 SHEET 22 A30 VAL E 754 PHE E 759 -1 N TYR E 757 O TYR E 766 SHEET 23 A30 LYS E 823 LYS E 830 1 O GLY E 826 N TYR E 758 SHEET 24 A30 TYR E 790 VAL E 797 -1 N TYR E 793 O LYS E 827 SHEET 25 A30 VAL E 805 VAL E 810 -1 O GLU E 808 N PHE E 794 SHEET 26 A30 TYR F 766 ARG F 771 1 O GLU F 767 N GLU E 809 SHEET 27 A30 SER F 752 PHE F 759 -1 N ILE F 753 O VAL F 770 SHEET 28 A30 LYS F 823 LYS F 830 1 O GLY F 826 N TYR F 758 SHEET 29 A30 TYR F 790 VAL F 797 -1 N LYS F 795 O ILE F 825 SHEET 30 A30 VAL F 805 GLU F 809 -1 O GLU F 808 N PHE F 794 CISPEP 1 CYS D 803 GLY D 804 0 5.53 SITE 1 AC1 2 CYS A 750 CYS C 803 SITE 1 AC2 3 PHE A 759 CYS A 760 TYR A 790 SITE 1 AC3 2 CYS B 750 ASP B 751 SITE 1 AC4 3 PHE B 759 CYS B 760 TYR B 790 SITE 1 AC5 1 CYS C 750 SITE 1 AC6 2 PHE C 759 CYS C 760 SITE 1 AC7 2 PHE D 759 CYS D 760 SITE 1 AC8 2 PHE E 759 CYS E 760 SITE 1 AC9 3 PHE F 759 CYS F 760 TYR F 790 SITE 1 BC1 2 CYS F 750 CYS F 803 CRYST1 125.550 125.550 115.430 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007965 0.004599 0.000000 0.00000 SCALE2 0.000000 0.009197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008663 0.00000