HEADER HYDROLASE 10-NOV-05 2D6B TITLE NOVEL BROMATE SPECIES TRAPPED WITHIN A PROTEIN CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LYSOZYME; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; ALLERGEN GAL D 4; GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS LYSOZYME; BROMATE, HYDROLASE EXPDTA X-RAY DIFFRACTION NUMMDL 10 AUTHOR J.ONDRACEK,J.R.MESTERS REVDAT 6 23-AUG-23 2D6B 1 REMARK LINK REVDAT 5 11-OCT-17 2D6B 1 REMARK REVDAT 4 09-SEP-15 2D6B 1 VERSN REVDAT 3 24-FEB-09 2D6B 1 VERSN REVDAT 2 24-OCT-06 2D6B 1 JRNL REVDAT 1 29-NOV-05 2D6B 0 JRNL AUTH J.ONDRACEK,J.R.MESTERS JRNL TITL AN ENSEMBLE OF CRYSTALLOGRAPHIC MODELS ENABLES THE JRNL TITL 2 DESCRIPTION OF NOVEL BROMATE-OXOANION SPECIES TRAPPED WITHIN JRNL TITL 3 A PROTEIN CRYSTAL JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 996 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16929100 JRNL DOI 10.1107/S0907444906021627 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.182 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.182 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5770 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 60421 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.184 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.182 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 5770 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 57538 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1225.1 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 6 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 5427 REMARK 3 NUMBER OF RESTRAINTS : 4152 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.031 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.094 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.088 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.000 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.048 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : SHELX REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY ? REMARK 4 REMARK 4 2D6B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2002 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.960 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1HEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.8, VAPOR DIFFUSION, TEMPERATURE REMARK 280 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.09550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.60500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.64325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.60500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.54775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.64325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.54775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.09550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1122 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1137 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1171 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1218 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1244 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1248 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 44 O HOH A 1034 1.75 REMARK 500 O1 202 A 135 O HOH A 1070 2.03 REMARK 500 OD2 ASP A 101 O HOH A 1072 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT LEU A 129 OXT LEU A 129 8555 1.65 REMARK 500 CD ARG A 128 O HOH A 1105 4454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 1 MET A 12 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 1 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = 8.3 DEGREES REMARK 500 1 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 ASP A 18 CB - CG - OD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 1 ASP A 18 CB - CG - OD2 ANGL. DEV. = -15.2 DEGREES REMARK 500 1 PHE A 34 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 ASP A 52 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ARG A 68 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 TRP A 111 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 ARG A 112 CD - NE - CZ ANGL. DEV. = 16.0 DEGREES REMARK 500 1 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 TRP A 123 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 2 MET A 12 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 2 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 2 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 2 ASP A 18 CB - CG - OD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 2 ASP A 18 CB - CG - OD2 ANGL. DEV. = -15.2 DEGREES REMARK 500 2 ARG A 21 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 2 PHE A 34 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 ASP A 52 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 2 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 TRP A 111 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 ARG A 112 CD - NE - CZ ANGL. DEV. = 16.2 DEGREES REMARK 500 2 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 2 TRP A 123 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 2 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 3 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 3 MET A 12 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 3 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 3 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 ASP A 18 CB - CG - OD1 ANGL. DEV. = 13.8 DEGREES REMARK 500 3 ASP A 18 CB - CG - OD2 ANGL. DEV. = -15.0 DEGREES REMARK 500 3 ASP A 52 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 3 TRP A 63 CH2 - CZ2 - CE2 ANGL. DEV. = -6.9 DEGREES REMARK 500 3 TRP A 111 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 ARG A 112 CD - NE - CZ ANGL. DEV. = 16.1 DEGREES REMARK 500 3 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 3 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 4 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 4 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 172 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 202 A 134 REMARK 610 1 202 A 135 REMARK 610 1 202 A 136 REMARK 610 1 202 A 137 REMARK 610 1 202 A 138 REMARK 610 1 202 A 139 REMARK 610 2 202 A 134 REMARK 610 2 202 A 135 REMARK 610 2 202 A 136 REMARK 610 2 202 A 137 REMARK 610 2 202 A 138 REMARK 610 2 202 A 139 REMARK 610 3 202 A 134 REMARK 610 3 202 A 135 REMARK 610 3 202 A 136 REMARK 610 3 202 A 137 REMARK 610 3 202 A 138 REMARK 610 3 202 A 139 REMARK 610 4 202 A 134 REMARK 610 4 202 A 135 REMARK 610 4 202 A 136 REMARK 610 4 202 A 137 REMARK 610 4 202 A 138 REMARK 610 4 202 A 139 REMARK 610 5 202 A 134 REMARK 610 5 202 A 135 REMARK 610 5 202 A 136 REMARK 610 5 202 A 137 REMARK 610 5 202 A 138 REMARK 610 5 202 A 139 REMARK 610 6 202 A 134 REMARK 610 6 202 A 135 REMARK 610 6 202 A 136 REMARK 610 6 202 A 137 REMARK 610 6 202 A 138 REMARK 610 6 202 A 139 REMARK 610 7 202 A 134 REMARK 610 7 202 A 135 REMARK 610 7 202 A 136 REMARK 610 7 202 A 137 REMARK 610 7 202 A 138 REMARK 610 7 202 A 139 REMARK 610 8 202 A 134 REMARK 610 8 202 A 135 REMARK 610 8 202 A 136 REMARK 610 8 202 A 137 REMARK 610 8 202 A 138 REMARK 610 8 202 A 139 REMARK 610 9 202 A 134 REMARK 610 9 202 A 135 REMARK 610 9 202 A 136 REMARK 610 9 202 A 137 REMARK 610 9 202 A 138 REMARK 610 9 202 A 139 REMARK 610 10 202 A 134 REMARK 610 10 202 A 135 REMARK 610 10 202 A 136 REMARK 610 10 202 A 137 REMARK 610 10 202 A 138 REMARK 610 10 202 A 139 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 142 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 89.6 REMARK 620 3 SER A 72 OG 89.3 166.7 REMARK 620 4 ARG A 73 O 91.3 94.6 98.6 REMARK 620 5 HOH A1010 O 173.2 96.6 84.0 91.0 REMARK 620 6 HOH A1012 O 99.1 88.4 78.7 169.2 78.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 202 A 139 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HC0 RELATED DB: PDB REMARK 900 THE SAME COMPLEX WITH PERIODATE DBREF 2D6B A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A 140 1 HET CL A 141 1 HET NA A 142 1 HET 202 A 131 4 HET 202 A 132 4 HET 202 A 133 4 HET 202 A 134 3 HET 202 A 135 2 HET 202 A 136 3 HET 202 A 137 2 HET 202 A 138 2 HET 202 A 139 2 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM 202 BROMIC ACID FORMUL 2 CL 2(CL 1-) FORMUL 4 NA NA 1+ FORMUL 5 202 9(BR H O3) FORMUL 14 HOH *298(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ARG A 125 5 7 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.02 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK O SER A 60 NA NA A 142 1555 1555 2.36 LINK O CYS A 64 NA NA A 142 1555 1555 2.38 LINK OG SER A 72 NA NA A 142 1555 1555 2.47 LINK O ARG A 73 NA NA A 142 1555 1555 2.42 LINK NA NA A 142 O HOH A1010 1555 1555 2.34 LINK NA NA A 142 O HOH A1012 1555 1555 2.56 SITE 1 AC1 3 TYR A 23 ASN A 113 HOH A1092 SITE 1 AC2 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC3 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC3 6 HOH A1010 HOH A1012 SITE 1 AC4 8 GLY A 67 ARG A 68 THR A 69 PRO A 70 SITE 2 AC4 8 GLY A 71 202 A 132 HOH A1026 HOH A1155 SITE 1 AC5 12 ASN A 65 ASP A 66 GLY A 67 ARG A 68 SITE 2 AC5 12 THR A 69 SER A 72 202 A 131 HOH A1012 SITE 3 AC5 12 HOH A1026 HOH A1033 HOH A1046 HOH A1130 SITE 1 AC6 9 LYS A 1 GLN A 41 ASN A 65 PRO A 79 SITE 2 AC6 9 SER A 86 HOH A1022 HOH A1039 HOH A1061 SITE 3 AC6 9 HOH A1182 SITE 1 AC7 5 GLY A 4 ARG A 5 CYS A 6 GLU A 7 SITE 2 AC7 5 HOH A1168 SITE 1 AC8 5 PHE A 3 ARG A 14 SER A 86 ILE A 88 SITE 2 AC8 5 HOH A1070 SITE 1 AC9 8 ASN A 19 ARG A 45 ARG A 68 HOH A1101 SITE 2 AC9 8 HOH A1178 HOH A1234 HOH A1267 HOH A1281 SITE 1 BC1 6 LYS A 33 ASN A 37 202 A 139 HOH A1020 SITE 2 BC1 6 HOH A1273 HOH A1290 SITE 1 BC2 6 ILE A 58 ASN A 59 TRP A 63 ALA A 107 SITE 2 BC2 6 HOH A1090 HOH A1127 SITE 1 BC3 7 GLY A 22 SER A 24 ASN A 27 ARG A 114 SITE 2 BC3 7 202 A 137 HOH A1236 HOH A1290 CRYST1 77.210 77.210 38.191 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026184 0.00000 MODEL 1