HEADER TRANSFERASE 21-NOV-05 2D7I TITLE CRYSTAL STRUCTURE OF PP-GALNAC-T10 WITH UDP, GALNAC AND MN2+ CAVEAT 2D7I NAG A 704 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 40-603; COMPND 5 SYNONYM: PROTEIN-UDP ACETYLGALACTOSAMINYLTRANSFERASE 10, UDP- COMPND 6 GALNAC:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10, POLYPEPTIDE COMPND 7 GALNAC TRANSFERASE 10, GALNAC-T10, PP-GANTASE 10; COMPND 8 EC: 2.4.1.41; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SMD1168; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS BETA TREFOIL, ROSSMANN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KUBOTA,T.SHIBA,S.SUGIOKA,R.KATO,S.WAKATSUKI,H.NARIMATSU REVDAT 5 29-JUL-20 2D7I 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE ATOM REVDAT 4 23-JAN-19 2D7I 1 TITLE REVDAT 3 13-JUL-11 2D7I 1 VERSN REVDAT 2 24-FEB-09 2D7I 1 VERSN REVDAT 1 07-NOV-06 2D7I 0 JRNL AUTH T.KUBOTA,T.SHIBA,S.SUGIOKA,S.FURUKAWA,H.SAWAKI,R.KATO, JRNL AUTH 2 S.WAKATSUKI,H.NARIMATSU JRNL TITL STRUCTURAL BASIS OF CARBOHYDRATE TRANSFER ACTIVITY BY HUMAN JRNL TITL 2 UDP-GALNAC: POLYPEPTIDE JRNL TITL 3 ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE (PP-GALNAC-T10) JRNL REF J.MOL.BIOL. V. 359 708 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16650853 JRNL DOI 10.1016/J.JMB.2006.03.061 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2543 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.278 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 3350, 0.05M SODIUM THIOCYANATE, REMARK 280 0.1M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.92750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.68750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.92750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.68750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.35650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.92750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.68750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.35650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.92750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.68750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 766 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 947 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 PRO A 40 REMARK 465 GLY A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 ALA A 48 REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 GLY A 54 REMARK 465 SER A 55 REMARK 465 HIS A 56 REMARK 465 SER A 57 REMARK 465 ARG A 58 REMARK 465 GLN A 59 REMARK 465 LYS A 60 REMARK 465 LYS A 61 REMARK 465 THR A 62 REMARK 465 PHE A 63 REMARK 465 PHE A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 48.16 -96.58 REMARK 500 PRO A 97 84.42 -64.16 REMARK 500 ARG A 109 -39.47 -38.91 REMARK 500 LYS A 193 -111.68 -106.80 REMARK 500 ASP A 272 -63.71 -106.77 REMARK 500 ASP A 282 -124.13 43.40 REMARK 500 ALA A 287 -167.72 -164.78 REMARK 500 PRO A 308 -1.90 -59.90 REMARK 500 GLU A 340 -113.61 -73.96 REMARK 500 PRO A 381 160.09 -45.42 REMARK 500 ASP A 399 -129.77 43.66 REMARK 500 HIS A 414 46.52 -91.75 REMARK 500 ASN A 431 75.05 58.31 REMARK 500 LYS A 475 50.98 -68.56 REMARK 500 LEU A 479 -73.80 -62.27 REMARK 500 PRO A 482 150.67 -41.40 REMARK 500 ASN A 498 84.59 53.36 REMARK 500 THR A 506 177.70 -55.61 REMARK 500 PRO A 516 -5.78 -55.69 REMARK 500 LYS A 521 28.05 -71.64 REMARK 500 ILE A 527 -92.83 -78.92 REMARK 500 SER A 528 -161.49 -70.63 REMARK 500 THR A 530 -16.09 -149.70 REMARK 500 LEU A 535 49.86 -99.63 REMARK 500 SER A 540 60.01 -57.92 REMARK 500 LYS A 542 36.82 -65.90 REMARK 500 SER A 569 33.58 -74.13 REMARK 500 ASN A 576 -174.12 -173.13 REMARK 500 ASN A 579 88.92 -173.70 REMARK 500 PRO A 580 20.64 -61.35 REMARK 500 ASN A 593 79.02 -162.08 REMARK 500 LYS A 599 -95.33 -64.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 706 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 OD2 REMARK 620 2 HIS A 239 NE2 104.3 REMARK 620 3 HIS A 370 NE2 93.9 94.6 REMARK 620 4 UDP A 705 O1A 88.6 81.6 175.9 REMARK 620 5 UDP A 705 O1B 91.7 159.3 97.3 85.9 REMARK 620 6 HOH A 711 O 174.5 74.9 91.6 85.9 87.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D7R RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GALNAC-SER DBREF 2D7I A 40 603 UNP Q86SR1 GLT10_HUMAN 40 603 SEQADV 2D7I HIS A 34 UNP Q86SR1 EXPRESSION TAG SEQADV 2D7I HIS A 35 UNP Q86SR1 EXPRESSION TAG SEQADV 2D7I HIS A 36 UNP Q86SR1 EXPRESSION TAG SEQADV 2D7I HIS A 37 UNP Q86SR1 EXPRESSION TAG SEQADV 2D7I HIS A 38 UNP Q86SR1 EXPRESSION TAG SEQADV 2D7I HIS A 39 UNP Q86SR1 EXPRESSION TAG SEQRES 1 A 570 HIS HIS HIS HIS HIS HIS PRO GLY GLY SER GLY ALA ALA SEQRES 2 A 570 VAL ALA PRO ALA ALA GLY GLN GLY SER HIS SER ARG GLN SEQRES 3 A 570 LYS LYS THR PHE PHE LEU GLY ASP GLY GLN LYS LEU LYS SEQRES 4 A 570 ASP TRP HIS ASP LYS GLU ALA ILE ARG ARG ASP ALA GLN SEQRES 5 A 570 ARG VAL GLY ASN GLY GLU GLN GLY ARG PRO TYR PRO MET SEQRES 6 A 570 THR ASP ALA GLU ARG VAL ASP GLN ALA TYR ARG GLU ASN SEQRES 7 A 570 GLY PHE ASN ILE TYR VAL SER ASP LYS ILE SER LEU ASN SEQRES 8 A 570 ARG SER LEU PRO ASP ILE ARG HIS PRO ASN CYS ASN SER SEQRES 9 A 570 LYS ARG TYR LEU GLU THR LEU PRO ASN THR SER ILE ILE SEQRES 10 A 570 ILE PRO PHE HIS ASN GLU GLY TRP SER SER LEU LEU ARG SEQRES 11 A 570 THR VAL HIS SER VAL LEU ASN ARG SER PRO PRO GLU LEU SEQRES 12 A 570 VAL ALA GLU ILE VAL LEU VAL ASP ASP PHE SER ASP ARG SEQRES 13 A 570 GLU HIS LEU LYS LYS PRO LEU GLU ASP TYR MET ALA LEU SEQRES 14 A 570 PHE PRO SER VAL ARG ILE LEU ARG THR LYS LYS ARG GLU SEQRES 15 A 570 GLY LEU ILE ARG THR ARG MET LEU GLY ALA SER VAL ALA SEQRES 16 A 570 THR GLY ASP VAL ILE THR PHE LEU ASP SER HIS CYS GLU SEQRES 17 A 570 ALA ASN VAL ASN TRP LEU PRO PRO LEU LEU ASP ARG ILE SEQRES 18 A 570 ALA ARG ASN ARG LYS THR ILE VAL CYS PRO MET ILE ASP SEQRES 19 A 570 VAL ILE ASP HIS ASP ASP PHE ARG TYR GLU THR GLN ALA SEQRES 20 A 570 GLY ASP ALA MET ARG GLY ALA PHE ASP TRP GLU MET TYR SEQRES 21 A 570 TYR LYS ARG ILE PRO ILE PRO PRO GLU LEU GLN LYS ALA SEQRES 22 A 570 ASP PRO SER ASP PRO PHE GLU SER PRO VAL MET ALA GLY SEQRES 23 A 570 GLY LEU PHE ALA VAL ASP ARG LYS TRP PHE TRP GLU LEU SEQRES 24 A 570 GLY GLY TYR ASP PRO GLY LEU GLU ILE TRP GLY GLY GLU SEQRES 25 A 570 GLN TYR GLU ILE SER PHE LYS VAL TRP MET CYS GLY GLY SEQRES 26 A 570 ARG MET GLU ASP ILE PRO CYS SER ARG VAL GLY HIS ILE SEQRES 27 A 570 TYR ARG LYS TYR VAL PRO TYR LYS VAL PRO ALA GLY VAL SEQRES 28 A 570 SER LEU ALA ARG ASN LEU LYS ARG VAL ALA GLU VAL TRP SEQRES 29 A 570 MET ASP GLU TYR ALA GLU TYR ILE TYR GLN ARG ARG PRO SEQRES 30 A 570 GLU TYR ARG HIS LEU SER ALA GLY ASP VAL ALA VAL GLN SEQRES 31 A 570 LYS LYS LEU ARG SER SER LEU ASN CYS LYS SER PHE LYS SEQRES 32 A 570 TRP PHE MET THR LYS ILE ALA TRP ASP LEU PRO LYS PHE SEQRES 33 A 570 TYR PRO PRO VAL GLU PRO PRO ALA ALA ALA TRP GLY GLU SEQRES 34 A 570 ILE ARG ASN VAL GLY THR GLY LEU CYS ALA ASP THR LYS SEQRES 35 A 570 HIS GLY ALA LEU GLY SER PRO LEU ARG LEU GLU GLY CYS SEQRES 36 A 570 VAL ARG GLY ARG GLY GLU ALA ALA TRP ASN ASN MET GLN SEQRES 37 A 570 VAL PHE THR PHE THR TRP ARG GLU ASP ILE ARG PRO GLY SEQRES 38 A 570 ASP PRO GLN HIS THR LYS LYS PHE CYS PHE ASP ALA ILE SEQRES 39 A 570 SER HIS THR SER PRO VAL THR LEU TYR ASP CYS HIS SER SEQRES 40 A 570 MET LYS GLY ASN GLN LEU TRP LYS TYR ARG LYS ASP LYS SEQRES 41 A 570 THR LEU TYR HIS PRO VAL SER GLY SER CYS MET ASP CYS SEQRES 42 A 570 SER GLU SER ASP HIS ARG ILE PHE MET ASN THR CYS ASN SEQRES 43 A 570 PRO SER SER LEU THR GLN GLN TRP LEU PHE GLU HIS THR SEQRES 44 A 570 ASN SER THR VAL LEU GLU LYS PHE ASN ARG ASN MODRES 2D7I ASN A 124 ASN GLYCOSYLATION SITE MODRES 2D7I ASN A 146 ASN GLYCOSYLATION SITE MODRES 2D7I ASN A 593 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 701 14 HET NGA A 702 15 HET NAG A 704 14 HET MN A 706 1 HET UDP A 705 25 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 NGA C8 H15 N O6 FORMUL 6 MN MN 2+ FORMUL 7 UDP C9 H14 N2 O12 P2 FORMUL 8 HOH *237(H2 O) HELIX 1 1 ASP A 76 GLN A 85 1 10 HELIX 2 2 GLY A 90 ARG A 94 5 5 HELIX 3 3 ASP A 105 GLU A 110 1 6 HELIX 4 4 ASN A 114 LYS A 120 1 7 HELIX 5 5 HIS A 132 SER A 137 5 6 HELIX 6 6 GLY A 157 SER A 172 1 16 HELIX 7 7 PRO A 173 GLU A 175 5 3 HELIX 8 8 ARG A 189 LEU A 192 5 4 HELIX 9 9 LYS A 193 ALA A 201 1 9 HELIX 10 10 GLY A 216 ALA A 228 1 13 HELIX 11 11 LEU A 247 ASN A 257 1 11 HELIX 12 12 ARG A 326 LEU A 332 1 7 HELIX 13 13 GLY A 344 CYS A 356 1 13 HELIX 14 14 SER A 385 MET A 398 1 14 HELIX 15 15 TYR A 401 GLN A 407 1 7 HELIX 16 16 ARG A 409 ARG A 413 5 5 HELIX 17 17 VAL A 420 ASN A 431 1 12 HELIX 18 18 SER A 434 ILE A 442 1 9 HELIX 19 19 ASP A 445 TYR A 450 1 6 HELIX 20 20 GLU A 494 ASN A 498 5 5 HELIX 21 21 ASN A 593 GLU A 598 1 6 SHEET 1 A 2 LEU A 71 LYS A 72 0 SHEET 2 A 2 TYR A 140 LEU A 141 -1 O TYR A 140 N LYS A 72 SHEET 1 B 5 VAL A 206 ARG A 210 0 SHEET 2 B 5 VAL A 177 ASP A 184 1 N LEU A 182 O LEU A 209 SHEET 3 B 5 THR A 147 PHE A 153 1 N ILE A 151 O VAL A 181 SHEET 4 B 5 VAL A 232 PHE A 235 1 O THR A 234 N ILE A 150 SHEET 5 B 5 PHE A 322 ASP A 325 -1 O PHE A 322 N PHE A 235 SHEET 1 C 4 CYS A 240 ALA A 242 0 SHEET 2 C 4 ARG A 359 HIS A 370 -1 O GLY A 369 N GLU A 241 SHEET 3 C 4 THR A 260 ILE A 269 1 N CYS A 263 O GLU A 361 SHEET 4 C 4 TYR A 276 GLU A 277 -1 O GLU A 277 N VAL A 268 SHEET 1 D 3 CYS A 240 ALA A 242 0 SHEET 2 D 3 ARG A 359 HIS A 370 -1 O GLY A 369 N GLU A 241 SHEET 3 D 3 PHE A 312 GLU A 313 -1 N PHE A 312 O ASP A 362 SHEET 1 E 2 ARG A 285 PHE A 288 0 SHEET 2 E 2 TYR A 294 ILE A 297 -1 O LYS A 295 N ALA A 287 SHEET 1 F 4 ILE A 511 PRO A 513 0 SHEET 2 F 4 PHE A 503 PHE A 505 -1 N THR A 504 O ARG A 512 SHEET 3 F 4 ALA A 459 ASN A 465 -1 N ALA A 459 O PHE A 505 SHEET 4 F 4 TRP A 587 HIS A 591 -1 O LEU A 588 N ARG A 464 SHEET 1 G 2 CYS A 471 ALA A 472 0 SHEET 2 G 2 LEU A 485 GLU A 486 -1 O GLU A 486 N CYS A 471 SHEET 1 H 2 LYS A 548 TYR A 549 0 SHEET 2 H 2 LEU A 555 TYR A 556 -1 O TYR A 556 N LYS A 548 SHEET 1 I 2 CYS A 563 CYS A 566 0 SHEET 2 I 2 ILE A 573 ASN A 576 -1 O PHE A 574 N ASP A 565 SSBOND 1 CYS A 135 CYS A 365 1555 1555 2.04 SSBOND 2 CYS A 356 CYS A 432 1555 1555 2.05 SSBOND 3 CYS A 471 CYS A 488 1555 1555 2.04 SSBOND 4 CYS A 523 CYS A 538 1555 1555 2.03 SSBOND 5 CYS A 563 CYS A 578 1555 1555 2.04 LINK ND2 ASN A 124 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 146 C1 NAG A 704 1555 1555 1.46 LINK ND2 ASN A 593 C1 NAG A 701 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK OD2 ASP A 237 MN MN A 706 1555 1555 2.19 LINK NE2 HIS A 239 MN MN A 706 1555 1555 2.24 LINK NE2 HIS A 370 MN MN A 706 1555 1555 2.31 LINK O1A UDP A 705 MN MN A 706 1555 1555 2.32 LINK O1B UDP A 705 MN MN A 706 1555 1555 2.13 LINK MN MN A 706 O HOH A 711 1555 1555 2.07 CRYST1 79.855 133.375 138.713 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007209 0.00000