data_2D86 # _entry.id 2D86 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D86 pdb_00002d86 10.2210/pdb2d86/pdb RCSB RCSB025107 ? ? WWPDB D_1000025107 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D86 _pdbx_database_status.recvd_initial_deposition_date 2005-12-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the CH domain from human Vav-3 protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Vav-3 protein' _entity.formula_weight 16062.574 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CH domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMEPWKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLK NIRTFLTACCETFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTPIALATGIRPFPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMEPWKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLK NIRTFLTACCETFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTPIALATGIRPFPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 GLU n 1 10 PRO n 1 11 TRP n 1 12 LYS n 1 13 GLN n 1 14 CYS n 1 15 ALA n 1 16 GLN n 1 17 TRP n 1 18 LEU n 1 19 ILE n 1 20 HIS n 1 21 CYS n 1 22 LYS n 1 23 VAL n 1 24 LEU n 1 25 PRO n 1 26 THR n 1 27 ASN n 1 28 HIS n 1 29 ARG n 1 30 VAL n 1 31 THR n 1 32 TRP n 1 33 ASP n 1 34 SER n 1 35 ALA n 1 36 GLN n 1 37 VAL n 1 38 PHE n 1 39 ASP n 1 40 LEU n 1 41 ALA n 1 42 GLN n 1 43 THR n 1 44 LEU n 1 45 ARG n 1 46 ASP n 1 47 GLY n 1 48 VAL n 1 49 LEU n 1 50 LEU n 1 51 CYS n 1 52 GLN n 1 53 LEU n 1 54 LEU n 1 55 ASN n 1 56 ASN n 1 57 LEU n 1 58 ARG n 1 59 ALA n 1 60 HIS n 1 61 SER n 1 62 ILE n 1 63 ASN n 1 64 LEU n 1 65 LYS n 1 66 GLU n 1 67 ILE n 1 68 ASN n 1 69 LEU n 1 70 ARG n 1 71 PRO n 1 72 GLN n 1 73 MET n 1 74 SER n 1 75 GLN n 1 76 PHE n 1 77 LEU n 1 78 CYS n 1 79 LEU n 1 80 LYS n 1 81 ASN n 1 82 ILE n 1 83 ARG n 1 84 THR n 1 85 PHE n 1 86 LEU n 1 87 THR n 1 88 ALA n 1 89 CYS n 1 90 CYS n 1 91 GLU n 1 92 THR n 1 93 PHE n 1 94 GLY n 1 95 MET n 1 96 ARG n 1 97 LYS n 1 98 SER n 1 99 GLU n 1 100 LEU n 1 101 PHE n 1 102 GLU n 1 103 ALA n 1 104 PHE n 1 105 ASP n 1 106 LEU n 1 107 PHE n 1 108 ASP n 1 109 VAL n 1 110 ARG n 1 111 ASP n 1 112 PHE n 1 113 GLY n 1 114 LYS n 1 115 VAL n 1 116 ILE n 1 117 GLU n 1 118 THR n 1 119 LEU n 1 120 SER n 1 121 ARG n 1 122 LEU n 1 123 SER n 1 124 ARG n 1 125 THR n 1 126 PRO n 1 127 ILE n 1 128 ALA n 1 129 LEU n 1 130 ALA n 1 131 THR n 1 132 GLY n 1 133 ILE n 1 134 ARG n 1 135 PRO n 1 136 PHE n 1 137 PRO n 1 138 SER n 1 139 GLY n 1 140 PRO n 1 141 SER n 1 142 SER n 1 143 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene VAV3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050404-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VAV3_HUMAN _struct_ref.pdbx_db_accession Q9UKW4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEPWKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLKNIRTFLT ACCETFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTPIALATGIRPFP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D86 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UKW4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D86 GLY A 1 ? UNP Q9UKW4 ? ? 'cloning artifact' 1 1 1 2D86 SER A 2 ? UNP Q9UKW4 ? ? 'cloning artifact' 2 2 1 2D86 SER A 3 ? UNP Q9UKW4 ? ? 'cloning artifact' 3 3 1 2D86 GLY A 4 ? UNP Q9UKW4 ? ? 'cloning artifact' 4 4 1 2D86 SER A 5 ? UNP Q9UKW4 ? ? 'cloning artifact' 5 5 1 2D86 SER A 6 ? UNP Q9UKW4 ? ? 'cloning artifact' 6 6 1 2D86 GLY A 7 ? UNP Q9UKW4 ? ? 'cloning artifact' 7 7 1 2D86 SER A 138 ? UNP Q9UKW4 ? ? 'cloning artifact' 138 8 1 2D86 GLY A 139 ? UNP Q9UKW4 ? ? 'cloning artifact' 139 9 1 2D86 PRO A 140 ? UNP Q9UKW4 ? ? 'cloning artifact' 140 10 1 2D86 SER A 141 ? UNP Q9UKW4 ? ? 'cloning artifact' 141 11 1 2D86 SER A 142 ? UNP Q9UKW4 ? ? 'cloning artifact' 142 12 1 2D86 GLY A 143 ? UNP Q9UKW4 ? ? 'cloning artifact' 143 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.23mM CH domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D86 _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D86 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D86 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2D86 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D86 _struct.title 'Solution structure of the CH domain from human Vav-3 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D86 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN, PROTEIN BINDING' _struct_keywords.text ;all alpha, calponin homology domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 9 ? CYS A 21 ? GLU A 9 CYS A 21 1 ? 13 HELX_P HELX_P2 2 GLN A 36 ? ASP A 46 ? GLN A 36 ASP A 46 1 ? 11 HELX_P HELX_P3 3 GLY A 47 ? ARG A 58 ? GLY A 47 ARG A 58 1 ? 12 HELX_P HELX_P4 4 ASN A 63 ? ILE A 67 ? ASN A 63 ILE A 67 5 ? 5 HELX_P HELX_P5 5 SER A 74 ? THR A 92 ? SER A 74 THR A 92 1 ? 19 HELX_P HELX_P6 6 GLU A 102 ? ASP A 108 ? GLU A 102 ASP A 108 1 ? 7 HELX_P HELX_P7 7 PHE A 112 ? SER A 123 ? PHE A 112 SER A 123 1 ? 12 HELX_P HELX_P8 8 ILE A 127 ? GLY A 132 ? ILE A 127 GLY A 132 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2D86 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D86 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLY 143 143 143 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -66.84 99.49 2 1 PHE A 93 ? ? -93.70 -61.03 3 1 LEU A 100 ? ? -38.43 157.32 4 1 THR A 125 ? ? -36.02 146.48 5 1 PRO A 126 ? ? -69.73 2.01 6 1 ARG A 134 ? ? -32.84 96.17 7 2 SER A 5 ? ? -64.24 93.21 8 2 GLU A 9 ? ? -45.09 152.56 9 2 HIS A 28 ? ? -50.48 170.40 10 2 GLN A 75 ? ? -38.03 -39.08 11 2 ASP A 105 ? ? -36.79 -38.30 12 2 ARG A 134 ? ? -36.28 98.68 13 2 SER A 138 ? ? -171.40 143.32 14 2 PRO A 140 ? ? -69.80 95.07 15 3 HIS A 28 ? ? -53.14 -175.92 16 3 ALA A 35 ? ? -43.67 160.01 17 3 GLN A 72 ? ? 34.44 43.36 18 3 VAL A 109 ? ? 38.28 43.14 19 3 PRO A 126 ? ? -69.77 0.50 20 3 ARG A 134 ? ? -36.36 98.68 21 3 PHE A 136 ? ? -49.05 156.49 22 3 SER A 138 ? ? -34.34 112.65 23 3 PRO A 140 ? ? -69.77 95.01 24 4 SER A 2 ? ? -53.32 98.22 25 4 SER A 5 ? ? -106.38 40.36 26 4 GLU A 9 ? ? -47.40 161.45 27 4 HIS A 28 ? ? -46.76 168.98 28 4 ALA A 35 ? ? -49.05 160.35 29 4 GLN A 72 ? ? 70.27 35.02 30 4 LEU A 77 ? ? -71.72 -70.00 31 4 PHE A 93 ? ? -90.92 -64.32 32 4 ASP A 105 ? ? -37.32 -32.83 33 4 ARG A 110 ? ? -70.36 -73.93 34 4 THR A 125 ? ? -39.54 149.51 35 4 ARG A 134 ? ? -32.78 96.07 36 5 SER A 3 ? ? -131.44 -44.20 37 5 MET A 8 ? ? -37.47 126.60 38 5 HIS A 28 ? ? -51.25 -177.12 39 5 VAL A 37 ? ? -33.95 -38.18 40 5 GLN A 72 ? ? 38.99 40.32 41 5 PHE A 93 ? ? -92.70 -62.94 42 5 ARG A 96 ? ? -57.55 96.96 43 5 LEU A 100 ? ? -54.85 -179.45 44 5 PRO A 126 ? ? -69.78 0.76 45 5 PHE A 136 ? ? -49.82 155.29 46 5 SER A 138 ? ? -51.24 106.50 47 6 GLU A 9 ? ? -48.36 157.00 48 6 HIS A 28 ? ? -51.28 -178.67 49 6 SER A 34 ? ? -92.76 31.94 50 6 PHE A 93 ? ? -92.71 -64.66 51 6 VAL A 109 ? ? 37.45 48.78 52 6 ARG A 134 ? ? -32.72 95.67 53 6 PHE A 136 ? ? -45.36 156.95 54 6 PRO A 137 ? ? -69.79 2.50 55 7 PRO A 10 ? ? -69.78 0.49 56 7 HIS A 28 ? ? -49.25 177.89 57 7 GLU A 91 ? ? -93.68 -64.62 58 7 PHE A 93 ? ? -97.10 -63.03 59 7 LEU A 100 ? ? -48.37 166.12 60 7 ASP A 105 ? ? -38.60 -35.13 61 8 SER A 5 ? ? 37.90 42.23 62 8 SER A 6 ? ? -62.58 99.26 63 8 GLU A 9 ? ? -39.88 154.89 64 8 HIS A 28 ? ? -49.42 171.74 65 8 PRO A 71 ? ? -69.84 2.18 66 8 GLN A 72 ? ? 39.59 34.52 67 8 PHE A 93 ? ? -97.93 -61.53 68 8 ARG A 96 ? ? -69.10 96.43 69 8 LYS A 97 ? ? -47.76 -19.76 70 8 ARG A 124 ? ? -39.70 -31.59 71 8 ARG A 134 ? ? -36.54 98.81 72 8 PRO A 137 ? ? -69.71 2.65 73 8 SER A 138 ? ? -38.29 138.33 74 9 LYS A 22 ? ? 72.47 51.81 75 9 HIS A 28 ? ? -45.67 170.81 76 9 ARG A 110 ? ? -54.72 -74.74 77 9 THR A 125 ? ? -39.05 149.55 78 9 PRO A 126 ? ? -69.82 2.00 79 9 ARG A 134 ? ? -32.23 95.71 80 10 SER A 2 ? ? -132.19 -46.75 81 10 HIS A 28 ? ? -50.80 -176.86 82 10 ALA A 35 ? ? -43.76 162.19 83 10 LEU A 86 ? ? -38.05 -37.63 84 10 PHE A 93 ? ? -94.56 -69.28 85 10 LEU A 100 ? ? -47.96 168.94 86 10 VAL A 109 ? ? 39.11 36.80 87 10 THR A 125 ? ? -38.42 149.61 88 10 PRO A 126 ? ? -69.77 1.62 89 10 ARG A 134 ? ? -34.02 97.07 90 11 HIS A 28 ? ? -48.24 170.75 91 11 ALA A 35 ? ? -46.50 163.74 92 11 ARG A 70 ? ? 72.68 54.81 93 11 PRO A 71 ? ? -69.79 2.88 94 11 ARG A 96 ? ? -56.91 101.30 95 11 LEU A 100 ? ? -45.89 165.12 96 11 THR A 125 ? ? -39.43 148.17 97 11 ARG A 134 ? ? -32.77 96.13 98 12 SER A 5 ? ? -38.52 152.51 99 12 HIS A 28 ? ? -46.49 170.94 100 12 PHE A 93 ? ? -94.01 -66.45 101 12 ARG A 96 ? ? -58.52 101.91 102 12 ASP A 105 ? ? -38.15 -39.28 103 12 ARG A 134 ? ? -41.14 101.75 104 12 PRO A 137 ? ? -69.72 82.63 105 12 SER A 142 ? ? -131.16 -50.73 106 13 HIS A 28 ? ? -52.31 -179.25 107 13 ALA A 35 ? ? -45.99 157.45 108 13 GLU A 102 ? ? -66.07 -178.48 109 13 VAL A 109 ? ? 35.41 41.21 110 13 PRO A 126 ? ? -69.65 3.71 111 13 ALA A 130 ? ? -39.11 -38.72 112 13 ARG A 134 ? ? -34.13 97.11 113 13 SER A 138 ? ? -67.55 85.51 114 13 SER A 141 ? ? -160.84 117.58 115 14 HIS A 28 ? ? -48.94 178.84 116 14 ALA A 35 ? ? -46.47 160.91 117 14 ASN A 68 ? ? -68.10 89.24 118 14 GLN A 72 ? ? 36.02 54.59 119 14 MET A 73 ? ? 34.83 49.37 120 14 PHE A 93 ? ? -93.23 -70.43 121 14 LEU A 100 ? ? -57.96 176.03 122 14 ASP A 105 ? ? -34.79 -38.13 123 14 PRO A 126 ? ? -69.83 1.56 124 14 ARG A 134 ? ? -47.87 107.55 125 14 PHE A 136 ? ? -44.32 153.79 126 14 PRO A 140 ? ? -69.77 85.45 127 15 SER A 2 ? ? -69.71 90.39 128 15 HIS A 28 ? ? -48.55 169.56 129 15 ARG A 96 ? ? -69.46 -178.26 130 15 THR A 125 ? ? -40.54 150.63 131 15 PRO A 137 ? ? -69.84 -165.85 132 15 PRO A 140 ? ? -69.82 1.85 133 16 SER A 6 ? ? -170.59 115.13 134 16 GLU A 9 ? ? -47.62 161.90 135 16 LYS A 22 ? ? 70.69 48.97 136 16 HIS A 28 ? ? -52.61 173.23 137 16 ARG A 70 ? ? 73.56 54.30 138 16 PRO A 71 ? ? -69.79 2.90 139 16 PHE A 93 ? ? -92.27 -68.58 140 16 PRO A 126 ? ? -69.73 0.66 141 16 PRO A 137 ? ? -69.76 -168.88 142 16 SER A 142 ? ? -120.86 -53.01 143 17 LYS A 22 ? ? 70.38 49.20 144 17 HIS A 28 ? ? -51.58 173.49 145 17 ARG A 45 ? ? -37.45 -37.42 146 17 PHE A 93 ? ? -95.01 -67.06 147 17 VAL A 109 ? ? 35.32 50.65 148 17 THR A 125 ? ? -35.68 147.28 149 17 ARG A 134 ? ? -33.78 96.92 150 18 HIS A 28 ? ? -52.67 -179.49 151 18 ARG A 70 ? ? -113.50 63.54 152 18 PRO A 71 ? ? -69.71 17.88 153 18 GLN A 72 ? ? -28.03 92.72 154 18 MET A 73 ? ? 34.02 49.77 155 18 ARG A 96 ? ? -56.14 99.32 156 18 LEU A 100 ? ? -43.25 162.57 157 18 ASP A 105 ? ? -36.81 -38.10 158 18 VAL A 109 ? ? 38.30 31.58 159 18 PRO A 126 ? ? -69.72 1.06 160 18 ARG A 134 ? ? -44.19 103.55 161 18 PHE A 136 ? ? -40.76 155.96 162 18 PRO A 140 ? ? -69.74 -179.74 163 19 SER A 3 ? ? -44.83 153.55 164 19 LYS A 22 ? ? 71.74 46.26 165 19 HIS A 28 ? ? -56.88 -174.74 166 19 ALA A 35 ? ? -46.79 167.12 167 19 PRO A 71 ? ? -69.79 1.07 168 19 GLN A 72 ? ? 34.48 48.19 169 19 MET A 73 ? ? 38.68 49.07 170 19 PHE A 93 ? ? -88.18 -70.74 171 19 LEU A 100 ? ? -45.76 157.21 172 19 ARG A 134 ? ? -37.47 99.39 173 20 HIS A 28 ? ? -49.31 176.04 174 20 ALA A 35 ? ? -47.46 166.27 175 20 VAL A 37 ? ? -38.29 -38.12 176 20 ARG A 70 ? ? 74.41 54.99 177 20 PRO A 71 ? ? -69.76 0.85 178 20 PHE A 76 ? ? -54.94 -71.31 179 20 THR A 84 ? ? -39.35 -32.78 180 20 LEU A 100 ? ? -49.07 160.47 181 20 PRO A 126 ? ? -69.78 0.30 182 20 PRO A 137 ? ? -69.72 -178.55 #