data_2D88 # _entry.id 2D88 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D88 pdb_00002d88 10.2210/pdb2d88/pdb RCSB RCSB025109 ? ? WWPDB D_1000025109 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002101337.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D88 _pdbx_database_status.recvd_initial_deposition_date 2005-12-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the CH domain from human MICAL-3 protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein MICAL-3' _entity.formula_weight 13233.885 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CH domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKEL GISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKEL GISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002101337.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 ALA n 1 10 ARG n 1 11 SER n 1 12 SER n 1 13 LYS n 1 14 LEU n 1 15 LEU n 1 16 GLY n 1 17 TRP n 1 18 CYS n 1 19 GLN n 1 20 ARG n 1 21 GLN n 1 22 THR n 1 23 ASP n 1 24 GLY n 1 25 TYR n 1 26 ALA n 1 27 GLY n 1 28 VAL n 1 29 ASN n 1 30 VAL n 1 31 THR n 1 32 ASP n 1 33 LEU n 1 34 THR n 1 35 MET n 1 36 SER n 1 37 TRP n 1 38 LYS n 1 39 SER n 1 40 GLY n 1 41 LEU n 1 42 ALA n 1 43 LEU n 1 44 CYS n 1 45 ALA n 1 46 ILE n 1 47 ILE n 1 48 HIS n 1 49 ARG n 1 50 TYR n 1 51 ARG n 1 52 PRO n 1 53 ASP n 1 54 LEU n 1 55 ILE n 1 56 ASP n 1 57 PHE n 1 58 ASP n 1 59 SER n 1 60 LEU n 1 61 ASP n 1 62 GLU n 1 63 GLN n 1 64 ASN n 1 65 VAL n 1 66 GLU n 1 67 LYS n 1 68 ASN n 1 69 ASN n 1 70 GLN n 1 71 LEU n 1 72 ALA n 1 73 PHE n 1 74 ASP n 1 75 ILE n 1 76 ALA n 1 77 GLU n 1 78 LYS n 1 79 GLU n 1 80 LEU n 1 81 GLY n 1 82 ILE n 1 83 SER n 1 84 PRO n 1 85 ILE n 1 86 MET n 1 87 THR n 1 88 GLY n 1 89 LYS n 1 90 GLU n 1 91 MET n 1 92 ALA n 1 93 SER n 1 94 VAL n 1 95 GLY n 1 96 GLU n 1 97 PRO n 1 98 ASP n 1 99 LYS n 1 100 LEU n 1 101 SER n 1 102 MET n 1 103 VAL n 1 104 MET n 1 105 TYR n 1 106 LEU n 1 107 THR n 1 108 GLN n 1 109 PHE n 1 110 TYR n 1 111 GLU n 1 112 MET n 1 113 PHE n 1 114 LYS n 1 115 ASP n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MICAL3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050627-23 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MICA3_HUMAN _struct_ref.pdbx_db_accession Q7RTP6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMT GKEMASVGEPDKLSMVMYLTQFYEMFKD ; _struct_ref.pdbx_align_begin 518 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D88 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7RTP6 _struct_ref_seq.db_align_beg 518 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 625 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D88 GLY A 1 ? UNP Q7RTP6 ? ? 'cloning artifact' 1 1 1 2D88 SER A 2 ? UNP Q7RTP6 ? ? 'cloning artifact' 2 2 1 2D88 SER A 3 ? UNP Q7RTP6 ? ? 'cloning artifact' 3 3 1 2D88 GLY A 4 ? UNP Q7RTP6 ? ? 'cloning artifact' 4 4 1 2D88 SER A 5 ? UNP Q7RTP6 ? ? 'cloning artifact' 5 5 1 2D88 SER A 6 ? UNP Q7RTP6 ? ? 'cloning artifact' 6 6 1 2D88 GLY A 7 ? UNP Q7RTP6 ? ? 'cloning artifact' 7 7 1 2D88 SER A 116 ? UNP Q7RTP6 ? ? 'cloning artifact' 116 8 1 2D88 GLY A 117 ? UNP Q7RTP6 ? ? 'cloning artifact' 117 9 1 2D88 PRO A 118 ? UNP Q7RTP6 ? ? 'cloning artifact' 118 10 1 2D88 SER A 119 ? UNP Q7RTP6 ? ? 'cloning artifact' 119 11 1 2D88 SER A 120 ? UNP Q7RTP6 ? ? 'cloning artifact' 120 12 1 2D88 GLY A 121 ? UNP Q7RTP6 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.12mM CH domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D88 _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D88 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D88 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2D88 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D88 _struct.title 'Solution structure of the CH domain from human MICAL-3 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D88 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN, PROTEIN BINDING' _struct_keywords.text ;all alpha, calponin homology domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? THR A 22 ? SER A 12 THR A 22 1 ? 11 HELX_P HELX_P2 2 THR A 34 ? SER A 39 ? THR A 34 SER A 39 1 ? 6 HELX_P HELX_P3 3 GLY A 40 ? ARG A 51 ? GLY A 40 ARG A 51 1 ? 12 HELX_P HELX_P4 4 ASN A 64 ? LEU A 80 ? ASN A 64 LEU A 80 1 ? 17 HELX_P HELX_P5 5 THR A 87 ? VAL A 94 ? THR A 87 VAL A 94 1 ? 8 HELX_P HELX_P6 6 ASP A 98 ? LYS A 114 ? ASP A 98 LYS A 114 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2D88 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D88 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -35.73 128.86 2 1 TYR A 25 ? ? -61.09 -179.64 3 1 ASN A 29 ? ? 34.90 53.09 4 1 VAL A 30 ? ? -38.16 113.68 5 1 THR A 34 ? ? -134.45 -74.87 6 1 LYS A 38 ? ? -39.97 -39.74 7 1 ALA A 76 ? ? -45.03 -71.13 8 1 GLU A 79 ? ? -99.39 -62.44 9 1 GLU A 96 ? ? -170.55 136.66 10 1 PRO A 97 ? ? -69.71 -174.72 11 1 LEU A 100 ? ? -50.77 -72.04 12 1 SER A 119 ? ? -52.84 96.83 13 1 SER A 120 ? ? -49.67 105.67 14 2 TYR A 25 ? ? -62.77 -176.28 15 2 THR A 34 ? ? -134.73 -55.86 16 2 LYS A 38 ? ? -35.81 -39.85 17 2 ASN A 68 ? ? -35.65 -31.28 18 2 LEU A 71 ? ? -51.21 -71.03 19 2 ASP A 74 ? ? -92.18 -60.85 20 2 GLU A 79 ? ? -104.20 -68.94 21 3 ARG A 10 ? ? -48.59 159.54 22 3 VAL A 28 ? ? -118.96 70.71 23 3 THR A 34 ? ? -120.59 -74.91 24 3 SER A 36 ? ? -39.86 -29.62 25 3 VAL A 65 ? ? -99.38 -66.52 26 3 LYS A 67 ? ? -68.46 -71.04 27 3 ASN A 68 ? ? -39.56 -32.19 28 3 ALA A 76 ? ? -45.94 -70.76 29 3 GLU A 79 ? ? -109.72 -64.79 30 3 ILE A 82 ? ? -62.72 97.33 31 3 GLU A 96 ? ? -170.39 126.46 32 3 LEU A 100 ? ? -51.65 -72.66 33 4 SER A 2 ? ? 39.94 42.32 34 4 ALA A 9 ? ? -106.31 42.33 35 4 SER A 11 ? ? -39.47 115.33 36 4 THR A 34 ? ? -134.44 -69.74 37 4 VAL A 65 ? ? -102.25 -66.74 38 4 ASN A 68 ? ? -35.78 -36.51 39 4 ALA A 76 ? ? -45.78 -73.35 40 4 GLU A 79 ? ? -104.22 -65.12 41 4 GLU A 96 ? ? -172.16 130.01 42 4 SER A 116 ? ? -35.24 104.12 43 5 VAL A 8 ? ? -46.38 157.49 44 5 ARG A 10 ? ? -34.56 144.11 45 5 VAL A 28 ? ? -91.26 -74.06 46 5 ASN A 29 ? ? 37.34 54.90 47 5 VAL A 30 ? ? -35.51 125.01 48 5 THR A 34 ? ? -133.77 -74.35 49 5 LEU A 60 ? ? -49.45 162.08 50 5 ASN A 68 ? ? -35.58 -37.09 51 5 ALA A 76 ? ? -48.52 -75.12 52 5 GLU A 79 ? ? -103.00 -64.46 53 5 GLU A 96 ? ? -172.65 133.83 54 5 SER A 116 ? ? -37.52 139.15 55 6 VAL A 8 ? ? -101.38 43.72 56 6 ALA A 9 ? ? -42.05 107.94 57 6 VAL A 28 ? ? -116.65 74.25 58 6 THR A 34 ? ? -132.12 -74.88 59 6 LYS A 38 ? ? -35.60 -39.93 60 6 LEU A 60 ? ? -55.25 174.53 61 6 VAL A 65 ? ? -104.37 -62.11 62 6 ASN A 68 ? ? -37.00 -39.97 63 6 ALA A 76 ? ? -43.70 -73.40 64 6 GLU A 79 ? ? -104.44 -65.31 65 6 PRO A 97 ? ? -69.74 -179.14 66 6 LEU A 100 ? ? -54.70 -71.98 67 6 SER A 116 ? ? -37.56 -39.75 68 6 PRO A 118 ? ? -69.69 -174.91 69 7 TYR A 25 ? ? -63.51 -176.27 70 7 LEU A 33 ? ? -82.27 43.24 71 7 THR A 34 ? ? -132.24 -74.20 72 7 SER A 36 ? ? -38.62 -26.63 73 7 ALA A 42 ? ? -39.44 -70.48 74 7 VAL A 65 ? ? -98.75 -66.32 75 7 ASN A 68 ? ? -36.52 -35.39 76 7 ALA A 76 ? ? -46.10 -72.01 77 7 SER A 116 ? ? -38.32 121.20 78 7 SER A 119 ? ? -162.38 117.14 79 8 SER A 11 ? ? -41.44 107.22 80 8 ASN A 29 ? ? -36.79 93.24 81 8 THR A 34 ? ? -132.49 -72.82 82 8 SER A 36 ? ? -38.73 -29.97 83 8 ALA A 42 ? ? -35.89 -70.13 84 8 GLU A 79 ? ? -108.02 -66.28 85 8 LEU A 100 ? ? -56.79 -72.15 86 8 THR A 107 ? ? -38.15 -28.79 87 9 ASN A 29 ? ? 34.49 46.03 88 9 VAL A 30 ? ? -44.42 106.02 89 9 LEU A 33 ? ? -85.77 40.66 90 9 THR A 34 ? ? -131.38 -73.01 91 9 SER A 36 ? ? -35.11 -33.98 92 9 ALA A 42 ? ? -41.43 -71.87 93 9 VAL A 65 ? ? -100.47 -68.12 94 9 ASN A 68 ? ? -39.46 -30.73 95 9 ASP A 74 ? ? -95.70 -60.19 96 9 ALA A 76 ? ? -46.55 -72.56 97 9 GLU A 79 ? ? -103.99 -64.08 98 9 LEU A 100 ? ? -57.78 -74.26 99 9 MET A 104 ? ? -59.72 -73.51 100 10 SER A 2 ? ? -99.73 42.52 101 10 ASP A 23 ? ? -37.94 128.44 102 10 THR A 34 ? ? -130.41 -72.63 103 10 LYS A 38 ? ? -39.40 -37.63 104 10 VAL A 65 ? ? -101.38 -65.14 105 10 ASN A 68 ? ? -35.43 -32.70 106 10 ALA A 76 ? ? -46.45 -72.14 107 10 GLU A 79 ? ? -109.58 -65.81 108 10 LYS A 99 ? ? -33.98 -73.09 109 10 MET A 104 ? ? -56.28 -71.28 110 11 SER A 6 ? ? -50.10 177.15 111 11 ASP A 23 ? ? -36.91 130.96 112 11 ASN A 29 ? ? 33.84 51.96 113 11 VAL A 30 ? ? -44.08 109.36 114 11 THR A 34 ? ? -125.02 -66.10 115 11 SER A 36 ? ? -37.47 -30.66 116 11 VAL A 65 ? ? -101.04 -63.36 117 11 GLU A 79 ? ? -106.01 -65.19 118 11 SER A 116 ? ? -53.91 106.55 119 11 PRO A 118 ? ? -69.82 -175.21 120 12 VAL A 8 ? ? -59.24 105.51 121 12 ASP A 23 ? ? -39.90 120.71 122 12 LEU A 33 ? ? -84.00 39.85 123 12 THR A 34 ? ? -134.80 -63.36 124 12 ALA A 42 ? ? -35.58 -71.27 125 12 LEU A 60 ? ? -49.95 169.19 126 12 VAL A 65 ? ? -101.04 -68.51 127 12 LYS A 67 ? ? -66.36 -75.68 128 12 ASP A 74 ? ? -94.22 -61.46 129 12 ALA A 76 ? ? -47.64 -71.90 130 12 GLU A 79 ? ? -107.63 -70.17 131 12 SER A 116 ? ? -37.64 122.92 132 13 SER A 3 ? ? -56.95 101.85 133 13 ARG A 10 ? ? -59.40 179.73 134 13 SER A 11 ? ? -36.69 120.44 135 13 ASP A 23 ? ? -36.71 133.48 136 13 TYR A 25 ? ? -61.54 -178.62 137 13 VAL A 28 ? ? -115.88 72.83 138 13 LEU A 33 ? ? -75.67 48.26 139 13 THR A 34 ? ? -135.03 -72.49 140 13 SER A 36 ? ? -35.87 -33.15 141 13 VAL A 65 ? ? -106.85 -67.40 142 13 ALA A 76 ? ? -45.78 -73.44 143 13 GLU A 79 ? ? -100.40 -64.61 144 13 SER A 120 ? ? -47.67 170.50 145 14 TRP A 17 ? ? -46.20 -71.10 146 14 ASP A 23 ? ? -35.18 120.54 147 14 TYR A 25 ? ? -65.54 -175.06 148 14 VAL A 28 ? ? -114.45 64.91 149 14 THR A 34 ? ? -132.08 -59.34 150 14 LYS A 38 ? ? -38.23 -35.74 151 14 VAL A 65 ? ? -105.13 -64.30 152 14 ALA A 76 ? ? -44.55 -73.85 153 14 GLU A 79 ? ? -106.38 -63.34 154 14 PRO A 97 ? ? -69.74 -171.90 155 14 LEU A 100 ? ? -54.37 -73.50 156 14 THR A 107 ? ? -34.86 -39.81 157 14 PRO A 118 ? ? -69.77 -179.54 158 15 ASP A 23 ? ? -34.15 112.66 159 15 ASN A 29 ? ? -31.62 98.72 160 15 THR A 34 ? ? -133.83 -56.90 161 15 LYS A 38 ? ? -33.52 -38.72 162 15 VAL A 65 ? ? -93.94 -65.47 163 15 GLU A 79 ? ? -99.39 -69.14 164 15 PRO A 97 ? ? -69.81 -176.36 165 15 SER A 116 ? ? -34.36 -39.87 166 15 PRO A 118 ? ? -69.77 1.67 167 15 SER A 119 ? ? -69.17 95.85 168 16 ALA A 9 ? ? -54.05 95.94 169 16 SER A 11 ? ? -34.53 107.22 170 16 LYS A 13 ? ? -34.34 -39.97 171 16 TYR A 25 ? ? -59.10 -175.01 172 16 THR A 34 ? ? -130.88 -58.34 173 16 VAL A 65 ? ? -102.04 -62.14 174 16 GLU A 79 ? ? -104.42 -65.01 175 16 PRO A 118 ? ? -69.76 2.81 176 17 VAL A 8 ? ? -103.80 42.26 177 17 ASN A 29 ? ? 35.82 52.03 178 17 THR A 34 ? ? -128.25 -74.84 179 17 VAL A 65 ? ? -104.75 -64.92 180 17 GLU A 79 ? ? -106.95 -63.72 181 17 PRO A 97 ? ? -69.79 -172.09 182 17 LEU A 100 ? ? -54.95 -72.78 183 17 THR A 107 ? ? -36.71 -35.31 184 18 VAL A 8 ? ? -103.47 57.54 185 18 THR A 34 ? ? -133.74 -74.46 186 18 VAL A 65 ? ? -102.21 -67.46 187 18 LYS A 67 ? ? -65.70 -71.65 188 18 ASN A 68 ? ? -35.42 -38.09 189 18 ALA A 76 ? ? -43.17 -72.69 190 18 GLU A 79 ? ? -98.91 -63.76 191 18 LEU A 100 ? ? -53.72 -73.80 192 18 SER A 116 ? ? -39.59 139.96 193 19 ASN A 29 ? ? 34.83 52.66 194 19 VAL A 30 ? ? -38.85 126.78 195 19 THR A 31 ? ? -130.50 -38.02 196 19 THR A 34 ? ? -119.24 -75.31 197 19 LEU A 60 ? ? -57.79 175.48 198 19 ALA A 76 ? ? -47.46 -74.20 199 19 GLU A 79 ? ? -101.49 -63.20 200 19 GLU A 96 ? ? -175.19 137.17 201 19 SER A 116 ? ? -36.08 135.57 202 20 VAL A 28 ? ? -115.90 60.93 203 20 THR A 34 ? ? -132.46 -70.89 204 20 VAL A 65 ? ? -54.53 -75.02 205 20 ASN A 69 ? ? -90.25 -66.54 206 20 GLN A 70 ? ? -37.88 -39.08 207 20 ASP A 74 ? ? -93.31 -60.02 208 20 GLU A 79 ? ? -108.00 -67.54 209 20 ASP A 98 ? ? -58.30 109.39 #