data_2D8C # _entry.id 2D8C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D8C pdb_00002d8c 10.2210/pdb2d8c/pdb RCSB RCSB025113 ? ? WWPDB D_1000025113 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008001227.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D8C _pdbx_database_status.recvd_initial_deposition_date 2005-12-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goroncy, A.K.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Tomizawa, T.' 4 'Kobayashi, N.' 5 'Tochio, N.' 6 'Inoue, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the sam-domain of mouse phosphatidyl ceramidecholinephosphotransferase 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goroncy, A.K.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Tomizawa, T.' 4 ? primary 'Kobayashi, N.' 5 ? primary 'Tochio, N.' 6 ? primary 'Inoue, M.' 7 ? primary 'Yokoyama, S.' 8 ? # _cell.entry_id 2D8C _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D8C _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Phosphatidylcholine:ceramide cholinephosphotransferase 1' _entity.formula_weight 10954.358 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.-.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'SAM DOMAIN' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Transmembrane protein 23, Sphingomyelin synthase 1, Mob protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMLSARTMKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETL KMEHHMEAHKNSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMLSARTMKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETL KMEHHMEAHKNSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008001227.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 LEU n 1 10 SER n 1 11 ALA n 1 12 ARG n 1 13 THR n 1 14 MET n 1 15 LYS n 1 16 GLU n 1 17 VAL n 1 18 VAL n 1 19 TYR n 1 20 TRP n 1 21 SER n 1 22 PRO n 1 23 LYS n 1 24 LYS n 1 25 VAL n 1 26 ALA n 1 27 ASP n 1 28 TRP n 1 29 LEU n 1 30 LEU n 1 31 GLU n 1 32 ASN n 1 33 ALA n 1 34 MET n 1 35 PRO n 1 36 GLU n 1 37 TYR n 1 38 CYS n 1 39 GLU n 1 40 PRO n 1 41 LEU n 1 42 GLU n 1 43 HIS n 1 44 PHE n 1 45 THR n 1 46 GLY n 1 47 GLN n 1 48 ASP n 1 49 LEU n 1 50 ILE n 1 51 ASN n 1 52 LEU n 1 53 THR n 1 54 GLN n 1 55 GLU n 1 56 ASP n 1 57 PHE n 1 58 LYS n 1 59 LYS n 1 60 PRO n 1 61 PRO n 1 62 LEU n 1 63 TYR n 1 64 ARG n 1 65 VAL n 1 66 SER n 1 67 SER n 1 68 ASP n 1 69 ASN n 1 70 GLY n 1 71 GLN n 1 72 ARG n 1 73 LEU n 1 74 LEU n 1 75 ASP n 1 76 MET n 1 77 ILE n 1 78 GLU n 1 79 THR n 1 80 LEU n 1 81 LYS n 1 82 MET n 1 83 GLU n 1 84 HIS n 1 85 HIS n 1 86 MET n 1 87 GLU n 1 88 ALA n 1 89 HIS n 1 90 LYS n 1 91 ASN n 1 92 SER n 1 93 GLY n 1 94 PRO n 1 95 SER n 1 96 SER n 1 97 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 9530058O11Rik _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041101-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'CELL-FREE PROTEIN SYNTHESIS' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SMS1_MOUSE _struct_ref.pdbx_db_accession Q8VCQ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLSARTMKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHHME AHKN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D8C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 91 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8VCQ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 84 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D8C GLY A 1 ? UNP Q8VCQ6 ? ? 'cloning artifact' 1 1 1 2D8C SER A 2 ? UNP Q8VCQ6 ? ? 'cloning artifact' 2 2 1 2D8C SER A 3 ? UNP Q8VCQ6 ? ? 'cloning artifact' 3 3 1 2D8C GLY A 4 ? UNP Q8VCQ6 ? ? 'cloning artifact' 4 4 1 2D8C SER A 5 ? UNP Q8VCQ6 ? ? 'cloning artifact' 5 5 1 2D8C SER A 6 ? UNP Q8VCQ6 ? ? 'cloning artifact' 6 6 1 2D8C GLY A 7 ? UNP Q8VCQ6 ? ? 'cloning artifact' 7 7 1 2D8C SER A 92 ? UNP Q8VCQ6 ? ? 'cloning artifact' 92 8 1 2D8C GLY A 93 ? UNP Q8VCQ6 ? ? 'cloning artifact' 93 9 1 2D8C PRO A 94 ? UNP Q8VCQ6 ? ? 'cloning artifact' 94 10 1 2D8C SER A 95 ? UNP Q8VCQ6 ? ? 'cloning artifact' 95 11 1 2D8C SER A 96 ? UNP Q8VCQ6 ? ? 'cloning artifact' 96 12 1 2D8C GLY A 97 ? UNP Q8VCQ6 ? ? 'cloning artifact' 97 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.51mM SAM DOMAIN, 20mM d-TRIS-HCL, 100mM NaCl, 1mM d-DTT, 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D8C _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D8C _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D8C _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 2.0.17 'PETER GUNTERT ET AL.' 1 'structure solution' CYANA 2.0.17 'PETER GUNTERT ET AL.' 2 collection XwinNMR 3.5 BRUKER 3 processing NMRPipe 20020425 'FRANK DELAGLIO' 4 'data analysis' NMRView 5.0.4 'BRUCE A. JOHNSON' 5 'data analysis' KUJIRA 0.899a 'NAOHIRO KOBAYASHI' 6 # _exptl.entry_id 2D8C _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D8C _struct.title 'Solution structure of the sam-domain of mouse phosphatidyl ceramidecholinephosphotransferase 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D8C _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, LIPID METABOLISM, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 23 ? ASN A 32 ? LYS A 23 ASN A 32 1 ? 10 HELX_P HELX_P2 2 THR A 45 ? ASN A 51 ? THR A 45 ASN A 51 1 ? 7 HELX_P HELX_P3 3 THR A 53 ? LYS A 59 ? THR A 53 LYS A 59 1 ? 7 HELX_P HELX_P4 4 GLY A 70 ? HIS A 84 ? GLY A 70 HIS A 84 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 1 -0.09 2 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 2 -0.03 3 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 3 -0.13 4 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 4 -0.12 5 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 5 -0.14 6 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 6 -0.10 7 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 7 -0.11 8 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 8 -0.08 9 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 9 -0.09 10 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 10 -0.08 11 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 11 -0.15 12 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 12 -0.18 13 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 13 -0.15 14 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 14 -0.13 15 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 15 -0.14 16 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 16 -0.12 17 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 17 -0.11 18 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 18 -0.16 19 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 19 -0.04 20 PRO 60 A . ? PRO 60 A PRO 61 A ? PRO 61 A 20 -0.06 # _database_PDB_matrix.entry_id 2D8C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D8C _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLY 97 97 97 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -121.99 -58.76 2 1 VAL A 17 ? ? 39.51 25.77 3 1 TRP A 20 ? ? -51.51 174.19 4 1 VAL A 25 ? ? -39.06 -37.61 5 1 ALA A 33 ? ? 70.59 49.45 6 1 ARG A 64 ? ? 33.48 43.32 7 1 MET A 82 ? ? -34.05 -33.26 8 1 HIS A 89 ? ? -54.64 170.62 9 1 ASN A 91 ? ? -39.71 139.94 10 2 SER A 3 ? ? -41.88 151.07 11 2 SER A 6 ? ? 37.23 41.28 12 2 THR A 13 ? ? -38.00 138.55 13 2 VAL A 17 ? ? 41.21 25.08 14 2 TRP A 20 ? ? -53.37 -179.12 15 2 VAL A 25 ? ? -39.02 -33.23 16 2 ARG A 64 ? ? 30.88 40.23 17 2 ASP A 68 ? ? -97.71 32.99 18 2 ASN A 69 ? ? 40.83 27.48 19 2 MET A 82 ? ? -35.86 -34.34 20 2 HIS A 85 ? ? -62.13 82.81 21 2 LYS A 90 ? ? -162.99 119.80 22 3 SER A 3 ? ? -123.80 -60.71 23 3 ALA A 11 ? ? -60.82 -75.04 24 3 VAL A 17 ? ? 42.59 25.05 25 3 TRP A 20 ? ? -52.17 -176.04 26 3 VAL A 25 ? ? -39.28 -33.08 27 3 ALA A 33 ? ? 73.00 44.16 28 3 SER A 67 ? ? -84.48 37.45 29 3 ASN A 69 ? ? 71.79 31.12 30 3 LEU A 74 ? ? -39.49 -39.99 31 3 MET A 82 ? ? -36.82 -33.06 32 3 HIS A 85 ? ? -68.71 82.38 33 3 MET A 86 ? ? -103.47 41.91 34 3 SER A 96 ? ? -87.45 41.80 35 4 VAL A 17 ? ? 34.40 30.87 36 4 TRP A 20 ? ? -53.50 175.59 37 4 SER A 67 ? ? -86.46 32.93 38 4 MET A 82 ? ? -34.41 -33.99 39 4 PRO A 94 ? ? -69.81 87.05 40 5 MET A 8 ? ? -46.90 171.32 41 5 ARG A 12 ? ? -122.50 -58.52 42 5 VAL A 17 ? ? 41.99 24.93 43 5 TRP A 20 ? ? -51.22 179.51 44 5 VAL A 25 ? ? -38.96 -37.02 45 5 LEU A 62 ? ? -59.14 100.49 46 5 ASP A 68 ? ? -83.21 35.34 47 5 MET A 82 ? ? -34.05 -35.52 48 5 HIS A 85 ? ? -77.68 46.63 49 5 GLU A 87 ? ? -97.36 40.53 50 5 HIS A 89 ? ? -42.85 158.73 51 5 ASN A 91 ? ? -41.54 150.92 52 6 SER A 2 ? ? -99.21 43.30 53 6 LEU A 9 ? ? -48.77 97.48 54 6 VAL A 17 ? ? 39.07 24.98 55 6 VAL A 25 ? ? -39.21 -36.31 56 6 ARG A 64 ? ? 47.42 25.56 57 6 MET A 82 ? ? -33.94 -33.81 58 6 ASN A 91 ? ? -47.13 101.94 59 7 MET A 8 ? ? 35.26 44.78 60 7 LEU A 9 ? ? -69.82 91.80 61 7 VAL A 17 ? ? 40.35 25.05 62 7 TRP A 20 ? ? -53.34 177.10 63 7 VAL A 25 ? ? -39.26 -35.13 64 7 ALA A 33 ? ? 70.66 48.43 65 7 LEU A 62 ? ? -59.51 100.67 66 7 ASP A 68 ? ? -93.33 33.55 67 7 MET A 82 ? ? -38.01 -28.08 68 7 SER A 96 ? ? -93.92 -61.93 69 8 SER A 5 ? ? -170.29 142.21 70 8 VAL A 17 ? ? 42.61 25.53 71 8 TRP A 20 ? ? -52.68 -179.11 72 8 VAL A 25 ? ? -39.19 -39.12 73 8 ALA A 33 ? ? 70.61 47.13 74 8 MET A 82 ? ? -36.59 -39.04 75 8 ASN A 91 ? ? -66.95 99.26 76 9 SER A 2 ? ? -50.12 106.44 77 9 ALA A 11 ? ? -170.51 138.69 78 9 THR A 13 ? ? -38.71 148.87 79 9 VAL A 17 ? ? 39.95 25.10 80 9 TRP A 20 ? ? -51.16 177.48 81 9 VAL A 25 ? ? -38.70 -35.28 82 9 LEU A 62 ? ? -59.82 100.43 83 9 ARG A 64 ? ? 38.09 28.44 84 9 MET A 82 ? ? -34.00 -33.71 85 9 HIS A 84 ? ? -48.27 157.80 86 9 HIS A 89 ? ? -82.20 40.89 87 10 SER A 5 ? ? -66.82 83.42 88 10 ARG A 12 ? ? -39.30 -34.87 89 10 VAL A 17 ? ? 38.20 26.82 90 10 TRP A 20 ? ? -49.85 172.81 91 10 VAL A 25 ? ? -39.05 -38.50 92 10 MET A 82 ? ? -34.09 -33.58 93 10 HIS A 85 ? ? -77.00 48.58 94 11 VAL A 17 ? ? 42.16 25.01 95 11 TRP A 20 ? ? -51.26 -179.61 96 11 SER A 67 ? ? -92.98 30.33 97 11 MET A 82 ? ? -35.69 -38.50 98 11 LYS A 90 ? ? -49.40 157.75 99 12 ALA A 11 ? ? -167.84 112.28 100 12 VAL A 17 ? ? 32.90 31.50 101 12 ALA A 33 ? ? 70.68 49.96 102 12 ARG A 64 ? ? 43.40 25.48 103 12 MET A 82 ? ? -38.78 -27.69 104 12 GLU A 87 ? ? -62.65 85.13 105 13 ALA A 11 ? ? -59.79 87.66 106 13 VAL A 17 ? ? 42.16 25.07 107 13 VAL A 25 ? ? -39.08 -38.44 108 13 ASP A 68 ? ? -98.95 34.81 109 13 MET A 82 ? ? -37.79 -38.33 110 13 HIS A 85 ? ? -78.51 45.33 111 13 GLU A 87 ? ? 34.39 39.64 112 13 PRO A 94 ? ? -69.77 2.20 113 14 SER A 5 ? ? -104.46 72.69 114 14 VAL A 17 ? ? 38.74 25.01 115 14 VAL A 25 ? ? -39.93 -36.33 116 14 ARG A 64 ? ? 38.51 36.58 117 14 SER A 67 ? ? -87.86 30.79 118 14 HIS A 84 ? ? -54.92 171.11 119 14 HIS A 85 ? ? -80.15 45.50 120 14 SER A 96 ? ? -47.08 99.76 121 15 SER A 5 ? ? -109.08 41.70 122 15 SER A 6 ? ? -47.01 108.62 123 15 VAL A 17 ? ? 41.44 25.08 124 15 TRP A 20 ? ? -51.82 175.73 125 15 VAL A 25 ? ? -39.10 -37.96 126 15 LEU A 62 ? ? -59.35 100.86 127 15 HIS A 85 ? ? -63.83 78.76 128 15 PRO A 94 ? ? -69.72 89.55 129 16 VAL A 17 ? ? 44.23 24.95 130 16 TRP A 20 ? ? -57.11 -179.56 131 16 VAL A 25 ? ? -39.16 -35.36 132 16 SER A 67 ? ? 39.79 25.39 133 16 MET A 82 ? ? -35.52 -31.15 134 16 HIS A 85 ? ? -78.15 49.66 135 16 MET A 86 ? ? -81.55 44.28 136 16 GLU A 87 ? ? -116.59 77.10 137 16 LYS A 90 ? ? -132.20 -62.10 138 16 SER A 92 ? ? -58.43 89.83 139 16 PRO A 94 ? ? -69.71 87.80 140 17 SER A 5 ? ? -161.84 118.88 141 17 MET A 8 ? ? -113.34 60.13 142 17 VAL A 17 ? ? 43.24 25.07 143 17 SER A 67 ? ? -80.02 39.73 144 17 MET A 82 ? ? -34.28 -33.00 145 17 HIS A 85 ? ? -67.09 87.55 146 17 LYS A 90 ? ? -66.85 91.79 147 17 PRO A 94 ? ? -69.78 0.82 148 18 SER A 5 ? ? -131.39 -51.23 149 18 SER A 10 ? ? -52.70 171.29 150 18 ARG A 12 ? ? -124.67 -51.84 151 18 VAL A 17 ? ? 39.62 25.03 152 18 ASP A 68 ? ? -82.33 35.37 153 18 GLU A 78 ? ? -38.59 -35.14 154 18 MET A 82 ? ? -34.07 -33.22 155 18 PRO A 94 ? ? -69.78 -178.26 156 19 SER A 2 ? ? -65.48 87.60 157 19 VAL A 17 ? ? 40.94 24.98 158 19 TRP A 20 ? ? -54.68 -176.94 159 19 VAL A 25 ? ? -38.98 -38.32 160 19 ARG A 64 ? ? 37.86 40.71 161 19 ASP A 68 ? ? -85.87 31.54 162 19 MET A 82 ? ? -34.45 -32.66 163 19 SER A 92 ? ? -62.58 99.99 164 19 PRO A 94 ? ? -69.73 91.74 165 20 SER A 3 ? ? -168.66 112.46 166 20 VAL A 17 ? ? 41.31 24.99 167 20 TRP A 20 ? ? -55.57 177.50 168 20 VAL A 25 ? ? -39.27 -34.16 169 20 ARG A 64 ? ? 46.17 25.03 170 20 ASP A 68 ? ? -90.04 33.09 171 20 MET A 82 ? ? -38.75 -33.24 172 20 GLU A 87 ? ? 31.95 41.68 #