HEADER IMMUNE SYSTEM, SIGNALING PROTEIN 06-DEC-05 2D8I TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL LYMPHOMA INVASION AND TITLE 2 METASTASIS 1 VARIAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL LYMPHOMA INVASION AND METASTASIS 1 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: T1AM-1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050425-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, T-CELL LYMPHOMA INVASION AND METASTASIS 1 VARIANT, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, IMMUNE SYSTEM, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D8I 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D8I 1 VERSN REVDAT 1 06-JUN-06 2D8I 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL LYMPHOMA JRNL TITL 2 INVASION AND METASTASIS 1 VARIAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D8I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025119. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.29MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 43.03 36.54 REMARK 500 1 SER A 6 55.23 -91.28 REMARK 500 1 PRO A 13 -178.58 -69.75 REMARK 500 1 ALA A 28 -59.74 -130.30 REMARK 500 1 ASP A 29 96.72 -68.21 REMARK 500 1 TYR A 31 162.34 -42.66 REMARK 500 1 LYS A 60 -71.85 -60.67 REMARK 500 1 ALA A 64 98.25 -60.61 REMARK 500 1 ASN A 73 37.52 71.27 REMARK 500 1 SER A 112 95.13 -49.16 REMARK 500 2 SER A 6 42.50 -96.72 REMARK 500 2 PRO A 13 -178.51 -69.76 REMARK 500 2 LYS A 14 171.15 -54.82 REMARK 500 2 ALA A 28 -70.97 -127.85 REMARK 500 2 TYR A 31 -176.83 -53.92 REMARK 500 2 THR A 54 63.90 -104.43 REMARK 500 2 ALA A 57 -72.53 -34.00 REMARK 500 2 ASP A 66 173.90 -46.74 REMARK 500 2 ASN A 73 34.36 72.94 REMARK 500 2 GLU A 108 29.90 39.64 REMARK 500 3 PRO A 13 -174.74 -69.74 REMARK 500 3 ASP A 25 55.04 74.89 REMARK 500 3 THR A 26 -30.71 -35.76 REMARK 500 3 ALA A 27 -39.88 -33.87 REMARK 500 3 ALA A 28 -64.82 -121.21 REMARK 500 3 TYR A 31 151.07 -43.72 REMARK 500 3 ALA A 57 -36.41 -33.52 REMARK 500 3 ALA A 64 90.61 -62.76 REMARK 500 3 ASN A 73 40.49 71.65 REMARK 500 3 LEU A 103 46.28 -85.87 REMARK 500 4 PRO A 13 -170.16 -69.75 REMARK 500 4 THR A 26 -73.45 -123.30 REMARK 500 4 TYR A 31 169.19 -44.53 REMARK 500 4 ALA A 57 -74.57 -36.48 REMARK 500 4 LEU A 62 160.57 -45.40 REMARK 500 4 LYS A 63 148.16 -171.76 REMARK 500 4 ALA A 64 104.54 -54.62 REMARK 500 5 SER A 3 43.38 -86.25 REMARK 500 5 SER A 5 97.50 -47.81 REMARK 500 5 ALA A 28 -61.37 -106.95 REMARK 500 5 TYR A 31 150.28 -37.54 REMARK 500 5 SER A 89 36.26 -91.15 REMARK 500 5 GLU A 104 40.35 -102.80 REMARK 500 5 VAL A 107 107.71 -53.56 REMARK 500 5 SER A 112 100.06 -58.72 REMARK 500 6 CYS A 12 136.68 -37.43 REMARK 500 6 PRO A 13 -164.34 -69.79 REMARK 500 6 LYS A 14 152.56 -38.12 REMARK 500 6 TYR A 31 -71.74 -34.43 REMARK 500 6 ASN A 73 31.02 72.67 REMARK 500 REMARK 500 THIS ENTRY HAS 176 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000753.1 RELATED DB: TARGETDB DBREF 2D8I A 8 108 GB 62087782 BAD92338 664 764 SEQADV 2D8I GLY A 1 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 2 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 3 GB 62087782 CLONING ARTIFACT SEQADV 2D8I GLY A 4 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 5 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 6 GB 62087782 CLONING ARTIFACT SEQADV 2D8I GLY A 7 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 109 GB 62087782 CLONING ARTIFACT SEQADV 2D8I GLY A 110 GB 62087782 CLONING ARTIFACT SEQADV 2D8I PRO A 111 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 112 GB 62087782 CLONING ARTIFACT SEQADV 2D8I SER A 113 GB 62087782 CLONING ARTIFACT SEQADV 2D8I GLY A 114 GB 62087782 CLONING ARTIFACT SEQRES 1 A 114 GLY SER SER GLY SER SER GLY GLU ILE GLU ILE CYS PRO SEQRES 2 A 114 LYS VAL THR GLN SER ILE HIS ILE GLU LYS SER ASP THR SEQRES 3 A 114 ALA ALA ASP THR TYR GLY PHE SER LEU SER SER VAL GLU SEQRES 4 A 114 GLU ASP GLY ILE ARG ARG LEU TYR VAL ASN SER VAL LYS SEQRES 5 A 114 GLU THR GLY LEU ALA SER LYS LYS GLY LEU LYS ALA GLY SEQRES 6 A 114 ASP GLU ILE LEU GLU ILE ASN ASN ARG ALA ALA ASP ALA SEQRES 7 A 114 LEU ASN SER SER MET LEU LYS ASP PHE LEU SER GLN PRO SEQRES 8 A 114 SER LEU GLY LEU LEU VAL ARG THR TYR PRO GLU LEU GLU SEQRES 9 A 114 GLU GLY VAL GLU SER GLY PRO SER SER GLY HELIX 1 1 LEU A 56 GLY A 61 1 6 HELIX 2 2 ALA A 75 LEU A 79 5 5 HELIX 3 3 ASN A 80 SER A 89 1 10 SHEET 1 A 3 VAL A 15 GLU A 22 0 SHEET 2 A 3 SER A 92 THR A 99 -1 O THR A 99 N VAL A 15 SHEET 3 A 3 ILE A 68 ILE A 71 -1 N LEU A 69 O LEU A 96 SHEET 1 B 2 SER A 34 GLU A 40 0 SHEET 2 B 2 ILE A 43 SER A 50 -1 O ARG A 45 N VAL A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1