data_2D8N # _entry.id 2D8N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D8N RCSB RCSB025124 WWPDB D_1000025124 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002004436.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D8N _pdbx_database_status.recvd_initial_deposition_date 2005-12-07 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kamo, S.' 1 'Kishishita, S.' 2 'Murayama, K.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of human recoverin at 2.2 A resolution' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kamo, S.' 1 primary 'Kishishita, S.' 2 primary 'Murayama, K.' 3 primary 'Shirouzu, M.' 4 primary 'Yokoyama, S.' 5 # _cell.entry_id 2D8N _cell.length_a 85.034 _cell.length_b 85.034 _cell.length_c 65.689 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D8N _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Recoverin 23913.182 1 ? ? ? ? 2 water nat water 18.015 87 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cancer associated retinopathy protein, CAR protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSG(MSE)GNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV FRSFDSNLDGTLDFKEYVIALH(MSE)TTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV(MSE)AIFK(MSE)ITPED VKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEK(MSE)KNA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSF DSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAE KIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKMKNA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002004436.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MSE n 1 9 GLY n 1 10 ASN n 1 11 SER n 1 12 LYS n 1 13 SER n 1 14 GLY n 1 15 ALA n 1 16 LEU n 1 17 SER n 1 18 LYS n 1 19 GLU n 1 20 ILE n 1 21 LEU n 1 22 GLU n 1 23 GLU n 1 24 LEU n 1 25 GLN n 1 26 LEU n 1 27 ASN n 1 28 THR n 1 29 LYS n 1 30 PHE n 1 31 SER n 1 32 GLU n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 CYS n 1 37 SER n 1 38 TRP n 1 39 TYR n 1 40 GLN n 1 41 SER n 1 42 PHE n 1 43 LEU n 1 44 LYS n 1 45 ASP n 1 46 CYS n 1 47 PRO n 1 48 THR n 1 49 GLY n 1 50 ARG n 1 51 ILE n 1 52 THR n 1 53 GLN n 1 54 GLN n 1 55 GLN n 1 56 PHE n 1 57 GLN n 1 58 SER n 1 59 ILE n 1 60 TYR n 1 61 ALA n 1 62 LYS n 1 63 PHE n 1 64 PHE n 1 65 PRO n 1 66 ASP n 1 67 THR n 1 68 ASP n 1 69 PRO n 1 70 LYS n 1 71 ALA n 1 72 TYR n 1 73 ALA n 1 74 GLN n 1 75 HIS n 1 76 VAL n 1 77 PHE n 1 78 ARG n 1 79 SER n 1 80 PHE n 1 81 ASP n 1 82 SER n 1 83 ASN n 1 84 LEU n 1 85 ASP n 1 86 GLY n 1 87 THR n 1 88 LEU n 1 89 ASP n 1 90 PHE n 1 91 LYS n 1 92 GLU n 1 93 TYR n 1 94 VAL n 1 95 ILE n 1 96 ALA n 1 97 LEU n 1 98 HIS n 1 99 MSE n 1 100 THR n 1 101 THR n 1 102 ALA n 1 103 GLY n 1 104 LYS n 1 105 THR n 1 106 ASN n 1 107 GLN n 1 108 LYS n 1 109 LEU n 1 110 GLU n 1 111 TRP n 1 112 ALA n 1 113 PHE n 1 114 SER n 1 115 LEU n 1 116 TYR n 1 117 ASP n 1 118 VAL n 1 119 ASP n 1 120 GLY n 1 121 ASN n 1 122 GLY n 1 123 THR n 1 124 ILE n 1 125 SER n 1 126 LYS n 1 127 ASN n 1 128 GLU n 1 129 VAL n 1 130 LEU n 1 131 GLU n 1 132 ILE n 1 133 VAL n 1 134 MSE n 1 135 ALA n 1 136 ILE n 1 137 PHE n 1 138 LYS n 1 139 MSE n 1 140 ILE n 1 141 THR n 1 142 PRO n 1 143 GLU n 1 144 ASP n 1 145 VAL n 1 146 LYS n 1 147 LEU n 1 148 LEU n 1 149 PRO n 1 150 ASP n 1 151 ASP n 1 152 GLU n 1 153 ASN n 1 154 THR n 1 155 PRO n 1 156 GLU n 1 157 LYS n 1 158 ARG n 1 159 ALA n 1 160 GLU n 1 161 LYS n 1 162 ILE n 1 163 TRP n 1 164 LYS n 1 165 TYR n 1 166 PHE n 1 167 GLY n 1 168 LYS n 1 169 ASN n 1 170 ASP n 1 171 ASP n 1 172 ASP n 1 173 LYS n 1 174 LEU n 1 175 THR n 1 176 GLU n 1 177 LYS n 1 178 GLU n 1 179 PHE n 1 180 ILE n 1 181 GLU n 1 182 GLY n 1 183 THR n 1 184 LEU n 1 185 ALA n 1 186 ASN n 1 187 LYS n 1 188 GLU n 1 189 ILE n 1 190 LEU n 1 191 ARG n 1 192 LEU n 1 193 ILE n 1 194 GLN n 1 195 PHE n 1 196 GLU n 1 197 PRO n 1 198 GLN n 1 199 LYS n 1 200 VAL n 1 201 LYS n 1 202 GLU n 1 203 LYS n 1 204 MSE n 1 205 LYS n 1 206 ASN n 1 207 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pX050309-02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free system' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RECO_HUMAN _struct_ref.pdbx_db_accession P35243 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT LDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG KNDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKMKNA ; _struct_ref.pdbx_align_begin 0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D8N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P35243 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 200 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 200 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D8N GLY A 1 ? UNP P35243 ? ? 'CLONING ARTIFACT' -6 1 1 2D8N SER A 2 ? UNP P35243 ? ? 'CLONING ARTIFACT' -5 2 1 2D8N SER A 3 ? UNP P35243 ? ? 'CLONING ARTIFACT' -4 3 1 2D8N GLY A 4 ? UNP P35243 ? ? 'CLONING ARTIFACT' -3 4 1 2D8N SER A 5 ? UNP P35243 ? ? 'CLONING ARTIFACT' -2 5 1 2D8N SER A 6 ? UNP P35243 ? ? 'CLONING ARTIFACT' -1 6 1 2D8N GLY A 7 ? UNP P35243 ? ? 'CLONING ARTIFACT' 0 7 1 2D8N MSE A 8 ? UNP P35243 MET 1 'MODIFIED RESIDUE' 1 8 1 2D8N MSE A 99 ? UNP P35243 MET 92 'MODIFIED RESIDUE' 92 9 1 2D8N MSE A 134 ? UNP P35243 MET 127 'MODIFIED RESIDUE' 127 10 1 2D8N MSE A 139 ? UNP P35243 MET 132 'MODIFIED RESIDUE' 132 11 1 2D8N MSE A 204 ? UNP P35243 MET 197 'MODIFIED RESIDUE' 197 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D8N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES-Na pH7.5, 1.2M tri-Sodium Citrate dihydrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2005-10-03 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator silicon _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.9794 1.0 3 0.964 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.9794, 0.964' # _reflns.entry_id 2D8N _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.20 _reflns.number_obs 11968 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 23.4162 _reflns.B_iso_Wilson_estimate 25.7 _reflns.pdbx_redundancy 7.27097 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.216 _reflns_shell.meanI_over_sigI_obs 9.35583 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2D8N _refine.ls_number_reflns_obs 11968 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 414363.15 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.52 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_number_reflns_R_free 2111 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.6 _refine.aniso_B[1][1] 3.45 _refine.aniso_B[2][2] 3.45 _refine.aniso_B[3][3] -6.90 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37829 _refine.solvent_model_param_bsol 52.8487 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2D8N _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.31 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1606 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1693 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 42.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.16 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 3272 _refine_ls_shell.R_factor_R_work 0.223 _refine_ls_shell.percent_reflns_obs 92.1 _refine_ls_shell.R_factor_R_free 0.31 _refine_ls_shell.R_factor_R_free_error 0.017 _refine_ls_shell.percent_reflns_R_free 9.1 _refine_ls_shell.number_reflns_R_free 327 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2D8N _struct.title 'Crystal structure of human recoverin at 2.2 A resolution' _struct.pdbx_descriptor Recoverin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D8N _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'In this crystal packing, it looks like monomer. But, there is no experimental evidence.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 17 ? THR A 28 ? SER A 10 THR A 21 1 ? 12 HELX_P HELX_P2 2 SER A 31 ? CYS A 46 ? SER A 24 CYS A 39 1 ? 16 HELX_P HELX_P3 3 GLN A 53 ? PHE A 63 ? GLN A 46 PHE A 56 1 ? 11 HELX_P HELX_P4 4 PRO A 69 ? ASP A 81 ? PRO A 62 ASP A 74 1 ? 13 HELX_P HELX_P5 5 PHE A 90 ? THR A 101 ? PHE A 83 THR A 94 1 ? 12 HELX_P HELX_P6 6 LYS A 108 ? ASP A 117 ? LYS A 101 ASP A 110 1 ? 10 HELX_P HELX_P7 7 SER A 125 ? ILE A 140 ? SER A 118 ILE A 133 1 ? 16 HELX_P HELX_P8 8 THR A 141 ? LEU A 147 ? THR A 134 LEU A 140 1 ? 7 HELX_P HELX_P9 9 THR A 154 ? PHE A 166 ? THR A 147 PHE A 159 1 ? 13 HELX_P HELX_P10 10 GLU A 176 ? ASN A 186 ? GLU A 169 ASN A 179 1 ? 11 HELX_P HELX_P11 11 ASN A 186 ? GLN A 194 ? ASN A 179 GLN A 187 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 8 C ? ? ? 1_555 A GLY 9 N ? ? A MSE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A HIS 98 C ? ? ? 1_555 A MSE 99 N ? ? A HIS 91 A MSE 92 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A MSE 99 C ? ? ? 1_555 A THR 100 N ? ? A MSE 92 A THR 93 1_555 ? ? ? ? ? ? ? 1.315 ? covale4 covale ? ? A VAL 133 C ? ? ? 1_555 A MSE 134 N ? ? A VAL 126 A MSE 127 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A MSE 134 C ? ? ? 1_555 A ALA 135 N ? ? A MSE 127 A ALA 128 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? A LYS 138 C ? ? ? 1_555 A MSE 139 N ? ? A LYS 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 139 C ? ? ? 1_555 A ILE 140 N ? ? A MSE 132 A ILE 133 1_555 ? ? ? ? ? ? ? 1.340 ? covale8 covale ? ? A LYS 203 C ? ? ? 1_555 A MSE 204 N ? ? A LYS 196 A MSE 197 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 50 ? THR A 52 ? ARG A 43 THR A 45 A 2 THR A 87 ? ASP A 89 ? THR A 80 ASP A 82 B 1 THR A 123 ? ILE A 124 ? THR A 116 ILE A 117 B 2 LEU A 174 ? THR A 175 ? LEU A 167 THR A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 51 ? N ILE A 44 O LEU A 88 ? O LEU A 81 B 1 2 N ILE A 124 ? N ILE A 117 O LEU A 174 ? O LEU A 167 # _database_PDB_matrix.entry_id 2D8N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D8N _atom_sites.fract_transf_matrix[1][1] 0.011760 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011760 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015223 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 ? ? ? A . n A 1 2 SER 2 -5 ? ? ? A . n A 1 3 SER 3 -4 ? ? ? A . n A 1 4 GLY 4 -3 ? ? ? A . n A 1 5 SER 5 -2 ? ? ? A . n A 1 6 SER 6 -1 ? ? ? A . n A 1 7 GLY 7 0 ? ? ? A . n A 1 8 MSE 8 1 1 MSE MSE A . n A 1 9 GLY 9 2 2 GLY GLY A . n A 1 10 ASN 10 3 3 ASN ASN A . n A 1 11 SER 11 4 4 SER SER A . n A 1 12 LYS 12 5 5 LYS LYS A . n A 1 13 SER 13 6 6 SER SER A . n A 1 14 GLY 14 7 7 GLY GLY A . n A 1 15 ALA 15 8 8 ALA ALA A . n A 1 16 LEU 16 9 9 LEU LEU A . n A 1 17 SER 17 10 10 SER SER A . n A 1 18 LYS 18 11 11 LYS LYS A . n A 1 19 GLU 19 12 12 GLU GLU A . n A 1 20 ILE 20 13 13 ILE ILE A . n A 1 21 LEU 21 14 14 LEU LEU A . n A 1 22 GLU 22 15 15 GLU GLU A . n A 1 23 GLU 23 16 16 GLU GLU A . n A 1 24 LEU 24 17 17 LEU LEU A . n A 1 25 GLN 25 18 18 GLN GLN A . n A 1 26 LEU 26 19 19 LEU LEU A . n A 1 27 ASN 27 20 20 ASN ASN A . n A 1 28 THR 28 21 21 THR THR A . n A 1 29 LYS 29 22 22 LYS LYS A . n A 1 30 PHE 30 23 23 PHE PHE A . n A 1 31 SER 31 24 24 SER SER A . n A 1 32 GLU 32 25 25 GLU GLU A . n A 1 33 GLU 33 26 26 GLU GLU A . n A 1 34 GLU 34 27 27 GLU GLU A . n A 1 35 LEU 35 28 28 LEU LEU A . n A 1 36 CYS 36 29 29 CYS CYS A . n A 1 37 SER 37 30 30 SER SER A . n A 1 38 TRP 38 31 31 TRP TRP A . n A 1 39 TYR 39 32 32 TYR TYR A . n A 1 40 GLN 40 33 33 GLN GLN A . n A 1 41 SER 41 34 34 SER SER A . n A 1 42 PHE 42 35 35 PHE PHE A . n A 1 43 LEU 43 36 36 LEU LEU A . n A 1 44 LYS 44 37 37 LYS LYS A . n A 1 45 ASP 45 38 38 ASP ASP A . n A 1 46 CYS 46 39 39 CYS CYS A . n A 1 47 PRO 47 40 40 PRO PRO A . n A 1 48 THR 48 41 41 THR THR A . n A 1 49 GLY 49 42 42 GLY GLY A . n A 1 50 ARG 50 43 43 ARG ARG A . n A 1 51 ILE 51 44 44 ILE ILE A . n A 1 52 THR 52 45 45 THR THR A . n A 1 53 GLN 53 46 46 GLN GLN A . n A 1 54 GLN 54 47 47 GLN GLN A . n A 1 55 GLN 55 48 48 GLN GLN A . n A 1 56 PHE 56 49 49 PHE PHE A . n A 1 57 GLN 57 50 50 GLN GLN A . n A 1 58 SER 58 51 51 SER SER A . n A 1 59 ILE 59 52 52 ILE ILE A . n A 1 60 TYR 60 53 53 TYR TYR A . n A 1 61 ALA 61 54 54 ALA ALA A . n A 1 62 LYS 62 55 55 LYS LYS A . n A 1 63 PHE 63 56 56 PHE PHE A . n A 1 64 PHE 64 57 57 PHE PHE A . n A 1 65 PRO 65 58 58 PRO PRO A . n A 1 66 ASP 66 59 59 ASP ASP A . n A 1 67 THR 67 60 60 THR THR A . n A 1 68 ASP 68 61 61 ASP ASP A . n A 1 69 PRO 69 62 62 PRO PRO A . n A 1 70 LYS 70 63 63 LYS LYS A . n A 1 71 ALA 71 64 64 ALA ALA A . n A 1 72 TYR 72 65 65 TYR TYR A . n A 1 73 ALA 73 66 66 ALA ALA A . n A 1 74 GLN 74 67 67 GLN GLN A . n A 1 75 HIS 75 68 68 HIS HIS A . n A 1 76 VAL 76 69 69 VAL VAL A . n A 1 77 PHE 77 70 70 PHE PHE A . n A 1 78 ARG 78 71 71 ARG ARG A . n A 1 79 SER 79 72 72 SER SER A . n A 1 80 PHE 80 73 73 PHE PHE A . n A 1 81 ASP 81 74 74 ASP ASP A . n A 1 82 SER 82 75 75 SER SER A . n A 1 83 ASN 83 76 76 ASN ASN A . n A 1 84 LEU 84 77 77 LEU LEU A . n A 1 85 ASP 85 78 78 ASP ASP A . n A 1 86 GLY 86 79 79 GLY GLY A . n A 1 87 THR 87 80 80 THR THR A . n A 1 88 LEU 88 81 81 LEU LEU A . n A 1 89 ASP 89 82 82 ASP ASP A . n A 1 90 PHE 90 83 83 PHE PHE A . n A 1 91 LYS 91 84 84 LYS LYS A . n A 1 92 GLU 92 85 85 GLU GLU A . n A 1 93 TYR 93 86 86 TYR TYR A . n A 1 94 VAL 94 87 87 VAL VAL A . n A 1 95 ILE 95 88 88 ILE ILE A . n A 1 96 ALA 96 89 89 ALA ALA A . n A 1 97 LEU 97 90 90 LEU LEU A . n A 1 98 HIS 98 91 91 HIS HIS A . n A 1 99 MSE 99 92 92 MSE MSE A . n A 1 100 THR 100 93 93 THR THR A . n A 1 101 THR 101 94 94 THR THR A . n A 1 102 ALA 102 95 95 ALA ALA A . n A 1 103 GLY 103 96 96 GLY GLY A . n A 1 104 LYS 104 97 97 LYS LYS A . n A 1 105 THR 105 98 98 THR THR A . n A 1 106 ASN 106 99 99 ASN ASN A . n A 1 107 GLN 107 100 100 GLN GLN A . n A 1 108 LYS 108 101 101 LYS LYS A . n A 1 109 LEU 109 102 102 LEU LEU A . n A 1 110 GLU 110 103 103 GLU GLU A . n A 1 111 TRP 111 104 104 TRP TRP A . n A 1 112 ALA 112 105 105 ALA ALA A . n A 1 113 PHE 113 106 106 PHE PHE A . n A 1 114 SER 114 107 107 SER SER A . n A 1 115 LEU 115 108 108 LEU LEU A . n A 1 116 TYR 116 109 109 TYR TYR A . n A 1 117 ASP 117 110 110 ASP ASP A . n A 1 118 VAL 118 111 111 VAL VAL A . n A 1 119 ASP 119 112 112 ASP ASP A . n A 1 120 GLY 120 113 113 GLY GLY A . n A 1 121 ASN 121 114 114 ASN ASN A . n A 1 122 GLY 122 115 115 GLY GLY A . n A 1 123 THR 123 116 116 THR THR A . n A 1 124 ILE 124 117 117 ILE ILE A . n A 1 125 SER 125 118 118 SER SER A . n A 1 126 LYS 126 119 119 LYS LYS A . n A 1 127 ASN 127 120 120 ASN ASN A . n A 1 128 GLU 128 121 121 GLU GLU A . n A 1 129 VAL 129 122 122 VAL VAL A . n A 1 130 LEU 130 123 123 LEU LEU A . n A 1 131 GLU 131 124 124 GLU GLU A . n A 1 132 ILE 132 125 125 ILE ILE A . n A 1 133 VAL 133 126 126 VAL VAL A . n A 1 134 MSE 134 127 127 MSE MSE A . n A 1 135 ALA 135 128 128 ALA ALA A . n A 1 136 ILE 136 129 129 ILE ILE A . n A 1 137 PHE 137 130 130 PHE PHE A . n A 1 138 LYS 138 131 131 LYS LYS A . n A 1 139 MSE 139 132 132 MSE MSE A . n A 1 140 ILE 140 133 133 ILE ILE A . n A 1 141 THR 141 134 134 THR THR A . n A 1 142 PRO 142 135 135 PRO PRO A . n A 1 143 GLU 143 136 136 GLU GLU A . n A 1 144 ASP 144 137 137 ASP ASP A . n A 1 145 VAL 145 138 138 VAL VAL A . n A 1 146 LYS 146 139 139 LYS LYS A . n A 1 147 LEU 147 140 140 LEU LEU A . n A 1 148 LEU 148 141 141 LEU LEU A . n A 1 149 PRO 149 142 142 PRO PRO A . n A 1 150 ASP 150 143 143 ASP ASP A . n A 1 151 ASP 151 144 144 ASP ASP A . n A 1 152 GLU 152 145 145 GLU GLU A . n A 1 153 ASN 153 146 146 ASN ASN A . n A 1 154 THR 154 147 147 THR THR A . n A 1 155 PRO 155 148 148 PRO PRO A . n A 1 156 GLU 156 149 149 GLU GLU A . n A 1 157 LYS 157 150 150 LYS LYS A . n A 1 158 ARG 158 151 151 ARG ARG A . n A 1 159 ALA 159 152 152 ALA ALA A . n A 1 160 GLU 160 153 153 GLU GLU A . n A 1 161 LYS 161 154 154 LYS LYS A . n A 1 162 ILE 162 155 155 ILE ILE A . n A 1 163 TRP 163 156 156 TRP TRP A . n A 1 164 LYS 164 157 157 LYS LYS A . n A 1 165 TYR 165 158 158 TYR TYR A . n A 1 166 PHE 166 159 159 PHE PHE A . n A 1 167 GLY 167 160 160 GLY GLY A . n A 1 168 LYS 168 161 161 LYS LYS A . n A 1 169 ASN 169 162 162 ASN ASN A . n A 1 170 ASP 170 163 163 ASP ASP A . n A 1 171 ASP 171 164 164 ASP ASP A . n A 1 172 ASP 172 165 165 ASP ASP A . n A 1 173 LYS 173 166 166 LYS LYS A . n A 1 174 LEU 174 167 167 LEU LEU A . n A 1 175 THR 175 168 168 THR THR A . n A 1 176 GLU 176 169 169 GLU GLU A . n A 1 177 LYS 177 170 170 LYS LYS A . n A 1 178 GLU 178 171 171 GLU GLU A . n A 1 179 PHE 179 172 172 PHE PHE A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 GLU 181 174 174 GLU GLU A . n A 1 182 GLY 182 175 175 GLY GLY A . n A 1 183 THR 183 176 176 THR THR A . n A 1 184 LEU 184 177 177 LEU LEU A . n A 1 185 ALA 185 178 178 ALA ALA A . n A 1 186 ASN 186 179 179 ASN ASN A . n A 1 187 LYS 187 180 180 LYS LYS A . n A 1 188 GLU 188 181 181 GLU GLU A . n A 1 189 ILE 189 182 182 ILE ILE A . n A 1 190 LEU 190 183 183 LEU LEU A . n A 1 191 ARG 191 184 184 ARG ARG A . n A 1 192 LEU 192 185 185 LEU LEU A . n A 1 193 ILE 193 186 186 ILE ILE A . n A 1 194 GLN 194 187 187 GLN GLN A . n A 1 195 PHE 195 188 188 PHE PHE A . n A 1 196 GLU 196 189 189 GLU GLU A . n A 1 197 PRO 197 190 190 PRO PRO A . n A 1 198 GLN 198 191 191 GLN GLN A . n A 1 199 LYS 199 192 192 LYS LYS A . n A 1 200 VAL 200 193 193 VAL VAL A . n A 1 201 LYS 201 194 194 LYS LYS A . n A 1 202 GLU 202 195 195 GLU GLU A . n A 1 203 LYS 203 196 196 LYS LYS A . n A 1 204 MSE 204 197 197 MSE MSE A . n A 1 205 LYS 205 198 ? ? ? A . n A 1 206 ASN 206 199 ? ? ? A . n A 1 207 ALA 207 200 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH TIP A . B 2 HOH 2 202 2 HOH TIP A . B 2 HOH 3 203 3 HOH TIP A . B 2 HOH 4 204 4 HOH TIP A . B 2 HOH 5 205 5 HOH TIP A . B 2 HOH 6 206 6 HOH TIP A . B 2 HOH 7 207 7 HOH TIP A . B 2 HOH 8 208 8 HOH TIP A . B 2 HOH 9 209 9 HOH TIP A . B 2 HOH 10 210 10 HOH TIP A . B 2 HOH 11 211 11 HOH TIP A . B 2 HOH 12 212 12 HOH TIP A . B 2 HOH 13 213 13 HOH TIP A . B 2 HOH 14 214 14 HOH TIP A . B 2 HOH 15 215 15 HOH TIP A . B 2 HOH 16 216 16 HOH TIP A . B 2 HOH 17 217 17 HOH TIP A . B 2 HOH 18 218 18 HOH TIP A . B 2 HOH 19 219 19 HOH TIP A . B 2 HOH 20 220 20 HOH TIP A . B 2 HOH 21 221 21 HOH TIP A . B 2 HOH 22 222 22 HOH TIP A . B 2 HOH 23 223 23 HOH TIP A . B 2 HOH 24 224 24 HOH TIP A . B 2 HOH 25 225 25 HOH TIP A . B 2 HOH 26 226 26 HOH TIP A . B 2 HOH 27 227 27 HOH TIP A . B 2 HOH 28 228 28 HOH TIP A . B 2 HOH 29 229 29 HOH TIP A . B 2 HOH 30 230 30 HOH TIP A . B 2 HOH 31 231 32 HOH TIP A . B 2 HOH 32 232 33 HOH TIP A . B 2 HOH 33 233 34 HOH TIP A . B 2 HOH 34 234 35 HOH TIP A . B 2 HOH 35 235 36 HOH TIP A . B 2 HOH 36 236 37 HOH TIP A . B 2 HOH 37 237 38 HOH TIP A . B 2 HOH 38 238 40 HOH TIP A . B 2 HOH 39 239 41 HOH TIP A . B 2 HOH 40 240 42 HOH TIP A . B 2 HOH 41 241 43 HOH TIP A . B 2 HOH 42 242 44 HOH TIP A . B 2 HOH 43 243 45 HOH TIP A . B 2 HOH 44 244 46 HOH TIP A . B 2 HOH 45 245 47 HOH TIP A . B 2 HOH 46 246 49 HOH TIP A . B 2 HOH 47 247 52 HOH TIP A . B 2 HOH 48 248 53 HOH TIP A . B 2 HOH 49 249 57 HOH TIP A . B 2 HOH 50 250 59 HOH TIP A . B 2 HOH 51 251 60 HOH TIP A . B 2 HOH 52 252 64 HOH TIP A . B 2 HOH 53 253 65 HOH TIP A . B 2 HOH 54 254 69 HOH TIP A . B 2 HOH 55 255 70 HOH TIP A . B 2 HOH 56 256 72 HOH TIP A . B 2 HOH 57 257 77 HOH TIP A . B 2 HOH 58 258 80 HOH TIP A . B 2 HOH 59 259 81 HOH TIP A . B 2 HOH 60 260 82 HOH TIP A . B 2 HOH 61 261 83 HOH TIP A . B 2 HOH 62 262 86 HOH TIP A . B 2 HOH 63 263 92 HOH TIP A . B 2 HOH 64 264 95 HOH TIP A . B 2 HOH 65 265 97 HOH TIP A . B 2 HOH 66 266 98 HOH TIP A . B 2 HOH 67 267 99 HOH TIP A . B 2 HOH 68 268 100 HOH TIP A . B 2 HOH 69 269 101 HOH TIP A . B 2 HOH 70 270 103 HOH TIP A . B 2 HOH 71 271 104 HOH TIP A . B 2 HOH 72 272 106 HOH TIP A . B 2 HOH 73 273 107 HOH TIP A . B 2 HOH 74 274 108 HOH TIP A . B 2 HOH 75 275 109 HOH TIP A . B 2 HOH 76 276 110 HOH TIP A . B 2 HOH 77 277 111 HOH TIP A . B 2 HOH 78 278 113 HOH TIP A . B 2 HOH 79 279 114 HOH TIP A . B 2 HOH 80 280 115 HOH TIP A . B 2 HOH 81 281 116 HOH TIP A . B 2 HOH 82 282 117 HOH TIP A . B 2 HOH 83 283 118 HOH TIP A . B 2 HOH 84 284 121 HOH TIP A . B 2 HOH 85 285 122 HOH TIP A . B 2 HOH 86 286 123 HOH TIP A . B 2 HOH 87 287 124 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 99 A MSE 92 ? MET SELENOMETHIONINE 3 A MSE 134 A MSE 127 ? MET SELENOMETHIONINE 4 A MSE 139 A MSE 132 ? MET SELENOMETHIONINE 5 A MSE 204 A MSE 197 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3,4 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 8670 ? 2 MORE -42 ? 2 'SSA (A^2)' 35380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 3 ? ? 100.13 -2.00 2 1 LEU A 9 ? ? -72.88 -76.46 3 1 SER A 10 ? ? 142.13 146.94 4 1 THR A 93 ? ? -51.74 -75.15 5 1 ALA A 95 ? ? 9.76 -105.97 6 1 LYS A 97 ? ? 168.75 115.64 7 1 GLN A 100 ? ? -57.32 92.85 8 1 LYS A 101 ? ? 47.86 93.52 9 1 PHE A 188 ? ? -66.85 96.07 10 1 GLU A 189 ? ? -146.01 34.65 11 1 LYS A 192 ? ? 108.81 -13.94 12 1 GLU A 195 ? ? -88.30 -153.16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -6 ? A GLY 1 2 1 Y 1 A SER -5 ? A SER 2 3 1 Y 1 A SER -4 ? A SER 3 4 1 Y 1 A GLY -3 ? A GLY 4 5 1 Y 1 A SER -2 ? A SER 5 6 1 Y 1 A SER -1 ? A SER 6 7 1 Y 1 A GLY 0 ? A GLY 7 8 1 Y 1 A LYS 198 ? A LYS 205 9 1 Y 1 A ASN 199 ? A ASN 206 10 1 Y 1 A ALA 200 ? A ALA 207 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #