data_2D8W # _entry.id 2D8W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D8W RCSB RCSB025133 WWPDB D_1000025133 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D8O VIL-thaumatin unspecified PDB 2D8P HYPER-VIL-thaumatin unspecified PDB 2D91 HYPER-VIL-lysozyme unspecified PDB 2D97 VIL-xylanase unspecified PDB 2D98 'VIL(extra KI/I2 added)-xylanase' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D8W _pdbx_database_status.recvd_initial_deposition_date 2005-12-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miyatake, H.' 1 'Hasegawa, T.' 2 'Yamano, A.' 3 # _citation.id primary _citation.title 'New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)' _citation.journal_abbrev 'ACTA CRYSTALLOGR.,SECT.D' _citation.journal_volume 62 _citation.page_first 280 _citation.page_last 289 _citation.year 2006 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16510975 _citation.pdbx_database_id_DOI 10.1107/S0907444905041909 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Miyatake, H.' 1 primary 'Hasegawa, T.' 2 primary 'Yamano, A.' 3 # _cell.entry_id 2D8W _cell.length_a 54.323 _cell.length_b 58.197 _cell.length_c 66.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D8W _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Cationic trypsin' 23827.875 1 3.4.21.4 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 3 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Beta-trypsin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHC(IYR)KSGIQVRLGEDNINVVEGNEQFISASKSIVHPSY NSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTS(IYR)PDVLKCLKAPILSDSSCKSAY PGQITSNMFCAG(TYI)LEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN ; _entity_poly.pdbx_seq_one_letter_code_can ;IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 TYR n 1 6 THR n 1 7 CYS n 1 8 GLY n 1 9 ALA n 1 10 ASN n 1 11 THR n 1 12 VAL n 1 13 PRO n 1 14 TYR n 1 15 GLN n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 ASN n 1 20 SER n 1 21 GLY n 1 22 TYR n 1 23 HIS n 1 24 PHE n 1 25 CYS n 1 26 GLY n 1 27 GLY n 1 28 SER n 1 29 LEU n 1 30 ILE n 1 31 ASN n 1 32 SER n 1 33 GLN n 1 34 TRP n 1 35 VAL n 1 36 VAL n 1 37 SER n 1 38 ALA n 1 39 ALA n 1 40 HIS n 1 41 CYS n 1 42 IYR n 1 43 LYS n 1 44 SER n 1 45 GLY n 1 46 ILE n 1 47 GLN n 1 48 VAL n 1 49 ARG n 1 50 LEU n 1 51 GLY n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 ILE n 1 56 ASN n 1 57 VAL n 1 58 VAL n 1 59 GLU n 1 60 GLY n 1 61 ASN n 1 62 GLU n 1 63 GLN n 1 64 PHE n 1 65 ILE n 1 66 SER n 1 67 ALA n 1 68 SER n 1 69 LYS n 1 70 SER n 1 71 ILE n 1 72 VAL n 1 73 HIS n 1 74 PRO n 1 75 SER n 1 76 TYR n 1 77 ASN n 1 78 SER n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 ASN n 1 83 ASN n 1 84 ASP n 1 85 ILE n 1 86 MET n 1 87 LEU n 1 88 ILE n 1 89 LYS n 1 90 LEU n 1 91 LYS n 1 92 SER n 1 93 ALA n 1 94 ALA n 1 95 SER n 1 96 LEU n 1 97 ASN n 1 98 SER n 1 99 ARG n 1 100 VAL n 1 101 ALA n 1 102 SER n 1 103 ILE n 1 104 SER n 1 105 LEU n 1 106 PRO n 1 107 THR n 1 108 SER n 1 109 CYS n 1 110 ALA n 1 111 SER n 1 112 ALA n 1 113 GLY n 1 114 THR n 1 115 GLN n 1 116 CYS n 1 117 LEU n 1 118 ILE n 1 119 SER n 1 120 GLY n 1 121 TRP n 1 122 GLY n 1 123 ASN n 1 124 THR n 1 125 LYS n 1 126 SER n 1 127 SER n 1 128 GLY n 1 129 THR n 1 130 SER n 1 131 IYR n 1 132 PRO n 1 133 ASP n 1 134 VAL n 1 135 LEU n 1 136 LYS n 1 137 CYS n 1 138 LEU n 1 139 LYS n 1 140 ALA n 1 141 PRO n 1 142 ILE n 1 143 LEU n 1 144 SER n 1 145 ASP n 1 146 SER n 1 147 SER n 1 148 CYS n 1 149 LYS n 1 150 SER n 1 151 ALA n 1 152 TYR n 1 153 PRO n 1 154 GLY n 1 155 GLN n 1 156 ILE n 1 157 THR n 1 158 SER n 1 159 ASN n 1 160 MET n 1 161 PHE n 1 162 CYS n 1 163 ALA n 1 164 GLY n 1 165 TYI n 1 166 LEU n 1 167 GLU n 1 168 GLY n 1 169 GLY n 1 170 LYS n 1 171 ASP n 1 172 SER n 1 173 CYS n 1 174 GLN n 1 175 GLY n 1 176 ASP n 1 177 SER n 1 178 GLY n 1 179 GLY n 1 180 PRO n 1 181 VAL n 1 182 VAL n 1 183 CYS n 1 184 SER n 1 185 GLY n 1 186 LYS n 1 187 LEU n 1 188 GLN n 1 189 GLY n 1 190 ILE n 1 191 VAL n 1 192 SER n 1 193 TRP n 1 194 GLY n 1 195 SER n 1 196 GLY n 1 197 CYS n 1 198 ALA n 1 199 GLN n 1 200 LYS n 1 201 ASN n 1 202 LYS n 1 203 PRO n 1 204 GLY n 1 205 VAL n 1 206 TYR n 1 207 THR n 1 208 LYS n 1 209 VAL n 1 210 CYS n 1 211 ASN n 1 212 TYR n 1 213 VAL n 1 214 SER n 1 215 TRP n 1 216 ILE n 1 217 LYS n 1 218 GLN n 1 219 THR n 1 220 ILE n 1 221 ALA n 1 222 SER n 1 223 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRY1_BOVIN _struct_ref.pdbx_db_accession P00760 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D8W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00760 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 243 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 229 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D8W IYR A 42 ? UNP P00760 TYR 62 'MODIFIED RESIDUE' 48 1 1 2D8W IYR A 131 ? UNP P00760 TYR 151 'MODIFIED RESIDUE' 137 2 1 2D8W TYI A 165 ? UNP P00760 TYR 185 'MODIFIED RESIDUE' 171 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 IYR 'L-peptide linking' n 3-IODO-TYROSINE ? 'C9 H10 I N O3' 307.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYI 'L-peptide linking' n 3,5-DIIODOTYROSINE ? 'C9 H9 I2 N O3' 432.982 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D8W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, 60mM benzamidine, 6mM CaCl2, 50mM Tris/HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-07-12 _diffrn_detector.details 'Osmic Cu CMF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic Cu CMF' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2D8W _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 43.811 _reflns.d_resolution_high 1.999 _reflns.number_obs 14772 _reflns.number_all 14825 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 17.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.13 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2D8W _refine.ls_number_reflns_obs 14757 _refine.ls_number_reflns_all 14757 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1210745.78 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.31 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 743 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.8 _refine.aniso_B[1][1] 0.33 _refine.aniso_B[2][2] -1.83 _refine.aniso_B[3][3] 1.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.402172 _refine.solvent_model_param_bsol 42.8392 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2D8W _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs -0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.09 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1632 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1729 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 33.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.86 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2278 _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.percent_reflns_obs 99.5 _refine_ls_shell.R_factor_R_free 0.257 _refine_ls_shell.R_factor_R_free_error 0.023 _refine_ls_shell.percent_reflns_R_free 5.4 _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 IYR2.param protein_IYR2.top 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2D8W _struct.title 'Structure of HYPER-VIL-trypsin' _struct.pdbx_descriptor 'Cationic trypsin (E.C.3.4.21.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D8W _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'iodo-trypsine, VAPORIZING IODINE LABELING(VIL), HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 38 ? IYR A 42 ? ALA A 44 IYR A 48 5 ? 5 HELX_P HELX_P2 2 SER A 144 ? TYR A 152 ? SER A 150 TYR A 158 1 ? 9 HELX_P HELX_P3 3 TYR A 212 ? SER A 222 ? TYR A 218 SER A 228 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 137 SG ? ? A CYS 13 A CYS 143 1_555 ? ? ? ? ? ? ? 2.023 ? disulf2 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 31 A CYS 47 1_555 ? ? ? ? ? ? ? 2.037 ? disulf3 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 210 SG ? ? A CYS 115 A CYS 216 1_555 ? ? ? ? ? ? ? 2.038 ? disulf4 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 183 SG ? ? A CYS 122 A CYS 189 1_555 ? ? ? ? ? ? ? 2.034 ? disulf5 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 162 SG ? ? A CYS 154 A CYS 168 1_555 ? ? ? ? ? ? ? 2.032 ? disulf6 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 197 SG ? ? A CYS 179 A CYS 203 1_555 ? ? ? ? ? ? ? 2.018 ? metalc1 metalc ? ? A GLU 52 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 58 A CA 300 1_555 ? ? ? ? ? ? ? 2.390 ? metalc2 metalc ? ? A ASN 54 O ? ? ? 1_555 B CA . CA ? ? A ASN 60 A CA 300 1_555 ? ? ? ? ? ? ? 2.531 ? metalc3 metalc ? ? A VAL 57 O ? ? ? 1_555 B CA . CA ? ? A VAL 63 A CA 300 1_555 ? ? ? ? ? ? ? 2.459 ? metalc4 metalc ? ? A GLU 62 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 68 A CA 300 1_555 ? ? ? ? ? ? ? 2.640 ? covale1 covale ? ? A CYS 41 C ? ? ? 1_555 A IYR 42 N ? ? A CYS 47 A IYR 48 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A IYR 42 C ? ? ? 1_555 A LYS 43 N ? ? A IYR 48 A LYS 49 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A SER 130 C ? ? ? 1_555 A IYR 131 N ? ? A SER 136 A IYR 137 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A IYR 131 C ? ? ? 1_555 A PRO 132 N ? ? A IYR 137 A PRO 138 1_555 ? ? ? ? ? ? ? 1.341 ? covale5 covale ? ? A GLY 164 C ? ? ? 1_555 A TYI 165 N ? ? A GLY 170 A TYI 171 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A TYI 165 C ? ? ? 1_555 A LEU 166 N ? ? A TYI 171 A LEU 172 1_555 ? ? ? ? ? ? ? 1.327 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 300 A HOH 496 1_555 ? ? ? ? ? ? ? 2.603 ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 300 A HOH 495 1_555 ? ? ? ? ? ? ? 2.548 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 5 ? THR A 6 ? TYR A 11 THR A 12 A 2 LYS A 136 ? PRO A 141 ? LYS A 142 PRO A 147 A 3 GLN A 115 ? GLY A 120 ? GLN A 121 GLY A 126 A 4 PRO A 180 ? CYS A 183 ? PRO A 186 CYS A 189 A 5 LYS A 186 ? TRP A 193 ? LYS A 192 TRP A 199 A 6 GLY A 204 ? LYS A 208 ? GLY A 210 LYS A 214 A 7 MET A 160 ? ALA A 163 ? MET A 166 ALA A 169 B 1 GLN A 15 ? ASN A 19 ? GLN A 21 ASN A 25 B 2 HIS A 23 ? ASN A 31 ? HIS A 29 ASN A 37 B 3 TRP A 34 ? SER A 37 ? TRP A 40 SER A 43 B 4 MET A 86 ? LEU A 90 ? MET A 92 LEU A 96 B 5 GLN A 63 ? VAL A 72 ? GLN A 69 VAL A 78 B 6 GLN A 47 ? LEU A 50 ? GLN A 53 LEU A 56 B 7 GLN A 15 ? ASN A 19 ? GLN A 21 ASN A 25 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 5 ? N TYR A 11 O CYS A 137 ? O CYS A 143 A 2 3 O LEU A 138 ? O LEU A 144 N ILE A 118 ? N ILE A 124 A 3 4 N LEU A 117 ? N LEU A 123 O VAL A 182 ? O VAL A 188 A 4 5 N CYS A 183 ? N CYS A 189 O LYS A 186 ? O LYS A 192 A 5 6 N TRP A 193 ? N TRP A 199 O VAL A 205 ? O VAL A 211 A 6 7 O TYR A 206 ? O TYR A 212 N PHE A 161 ? N PHE A 167 B 1 2 N LEU A 18 ? N LEU A 24 O CYS A 25 ? O CYS A 31 B 2 3 N SER A 28 ? N SER A 34 O VAL A 36 ? O VAL A 42 B 3 4 N VAL A 35 ? N VAL A 41 O ILE A 88 ? O ILE A 94 B 4 5 O LEU A 87 ? O LEU A 93 N ILE A 71 ? N ILE A 77 B 5 6 O ILE A 65 ? O ILE A 71 N VAL A 48 ? N VAL A 54 B 6 7 O GLN A 47 ? O GLN A 53 N ASN A 19 ? N ASN A 25 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 300' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD A 401' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 402' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 52 ? GLU A 58 . ? 1_555 ? 2 AC1 6 ASN A 54 ? ASN A 60 . ? 1_555 ? 3 AC1 6 VAL A 57 ? VAL A 63 . ? 1_555 ? 4 AC1 6 GLU A 62 ? GLU A 68 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 495 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 496 . ? 1_555 ? 7 AC2 3 GLN A 47 ? GLN A 53 . ? 4_455 ? 8 AC2 3 PRO A 74 ? PRO A 80 . ? 1_555 ? 9 AC2 3 SER A 75 ? SER A 81 . ? 1_555 ? 10 AC3 1 GLN A 115 ? GLN A 121 . ? 1_555 ? 11 AC4 1 TYI A 165 ? TYI A 171 . ? 1_555 ? # _database_PDB_matrix.entry_id 2D8W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D8W _atom_sites.fract_transf_matrix[1][1] 0.018408 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017183 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015011 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 7 7 ILE ILE A . n A 1 2 VAL 2 8 8 VAL VAL A . n A 1 3 GLY 3 9 9 GLY GLY A . n A 1 4 GLY 4 10 10 GLY GLY A . n A 1 5 TYR 5 11 11 TYR TYR A . n A 1 6 THR 6 12 12 THR THR A . n A 1 7 CYS 7 13 13 CYS CYS A . n A 1 8 GLY 8 14 14 GLY GLY A . n A 1 9 ALA 9 15 15 ALA ALA A . n A 1 10 ASN 10 16 16 ASN ASN A . n A 1 11 THR 11 17 17 THR THR A . n A 1 12 VAL 12 18 18 VAL VAL A . n A 1 13 PRO 13 19 19 PRO PRO A . n A 1 14 TYR 14 20 20 TYR TYR A . n A 1 15 GLN 15 21 21 GLN GLN A . n A 1 16 VAL 16 22 22 VAL VAL A . n A 1 17 SER 17 23 23 SER SER A . n A 1 18 LEU 18 24 24 LEU LEU A . n A 1 19 ASN 19 25 25 ASN ASN A . n A 1 20 SER 20 26 26 SER SER A . n A 1 21 GLY 21 27 27 GLY GLY A . n A 1 22 TYR 22 28 28 TYR TYR A . n A 1 23 HIS 23 29 29 HIS HIS A . n A 1 24 PHE 24 30 30 PHE PHE A . n A 1 25 CYS 25 31 31 CYS CYS A . n A 1 26 GLY 26 32 32 GLY GLY A . n A 1 27 GLY 27 33 33 GLY GLY A . n A 1 28 SER 28 34 34 SER SER A . n A 1 29 LEU 29 35 35 LEU LEU A . n A 1 30 ILE 30 36 36 ILE ILE A . n A 1 31 ASN 31 37 37 ASN ASN A . n A 1 32 SER 32 38 38 SER SER A . n A 1 33 GLN 33 39 39 GLN GLN A . n A 1 34 TRP 34 40 40 TRP TRP A . n A 1 35 VAL 35 41 41 VAL VAL A . n A 1 36 VAL 36 42 42 VAL VAL A . n A 1 37 SER 37 43 43 SER SER A . n A 1 38 ALA 38 44 44 ALA ALA A . n A 1 39 ALA 39 45 45 ALA ALA A . n A 1 40 HIS 40 46 46 HIS HIS A . n A 1 41 CYS 41 47 47 CYS CYS A . n A 1 42 IYR 42 48 48 IYR IYR A . n A 1 43 LYS 43 49 49 LYS LYS A . n A 1 44 SER 44 50 50 SER SER A . n A 1 45 GLY 45 51 51 GLY GLY A . n A 1 46 ILE 46 52 52 ILE ILE A . n A 1 47 GLN 47 53 53 GLN GLN A . n A 1 48 VAL 48 54 54 VAL VAL A . n A 1 49 ARG 49 55 55 ARG ARG A . n A 1 50 LEU 50 56 56 LEU LEU A . n A 1 51 GLY 51 57 57 GLY GLY A . n A 1 52 GLU 52 58 58 GLU GLU A . n A 1 53 ASP 53 59 59 ASP ASP A . n A 1 54 ASN 54 60 60 ASN ASN A . n A 1 55 ILE 55 61 61 ILE ILE A . n A 1 56 ASN 56 62 62 ASN ASN A . n A 1 57 VAL 57 63 63 VAL VAL A . n A 1 58 VAL 58 64 64 VAL VAL A . n A 1 59 GLU 59 65 65 GLU GLU A . n A 1 60 GLY 60 66 66 GLY GLY A . n A 1 61 ASN 61 67 67 ASN ASN A . n A 1 62 GLU 62 68 68 GLU GLU A . n A 1 63 GLN 63 69 69 GLN GLN A . n A 1 64 PHE 64 70 70 PHE PHE A . n A 1 65 ILE 65 71 71 ILE ILE A . n A 1 66 SER 66 72 72 SER SER A . n A 1 67 ALA 67 73 73 ALA ALA A . n A 1 68 SER 68 74 74 SER SER A . n A 1 69 LYS 69 75 75 LYS LYS A . n A 1 70 SER 70 76 76 SER SER A . n A 1 71 ILE 71 77 77 ILE ILE A . n A 1 72 VAL 72 78 78 VAL VAL A . n A 1 73 HIS 73 79 79 HIS HIS A . n A 1 74 PRO 74 80 80 PRO PRO A . n A 1 75 SER 75 81 81 SER SER A . n A 1 76 TYR 76 82 82 TYR TYR A . n A 1 77 ASN 77 83 83 ASN ASN A . n A 1 78 SER 78 84 84 SER SER A . n A 1 79 ASN 79 85 85 ASN ASN A . n A 1 80 THR 80 86 86 THR THR A . n A 1 81 LEU 81 87 87 LEU LEU A . n A 1 82 ASN 82 88 88 ASN ASN A . n A 1 83 ASN 83 89 89 ASN ASN A . n A 1 84 ASP 84 90 90 ASP ASP A . n A 1 85 ILE 85 91 91 ILE ILE A . n A 1 86 MET 86 92 92 MET MET A . n A 1 87 LEU 87 93 93 LEU LEU A . n A 1 88 ILE 88 94 94 ILE ILE A . n A 1 89 LYS 89 95 95 LYS LYS A . n A 1 90 LEU 90 96 96 LEU LEU A . n A 1 91 LYS 91 97 97 LYS LYS A . n A 1 92 SER 92 98 98 SER SER A . n A 1 93 ALA 93 99 99 ALA ALA A . n A 1 94 ALA 94 100 100 ALA ALA A . n A 1 95 SER 95 101 101 SER SER A . n A 1 96 LEU 96 102 102 LEU LEU A . n A 1 97 ASN 97 103 103 ASN ASN A . n A 1 98 SER 98 104 104 SER SER A . n A 1 99 ARG 99 105 105 ARG ARG A . n A 1 100 VAL 100 106 106 VAL VAL A . n A 1 101 ALA 101 107 107 ALA ALA A . n A 1 102 SER 102 108 108 SER SER A . n A 1 103 ILE 103 109 109 ILE ILE A . n A 1 104 SER 104 110 110 SER SER A . n A 1 105 LEU 105 111 111 LEU LEU A . n A 1 106 PRO 106 112 112 PRO PRO A . n A 1 107 THR 107 113 113 THR THR A . n A 1 108 SER 108 114 114 SER SER A . n A 1 109 CYS 109 115 115 CYS CYS A . n A 1 110 ALA 110 116 116 ALA ALA A . n A 1 111 SER 111 117 117 SER SER A . n A 1 112 ALA 112 118 118 ALA ALA A . n A 1 113 GLY 113 119 119 GLY GLY A . n A 1 114 THR 114 120 120 THR THR A . n A 1 115 GLN 115 121 121 GLN GLN A . n A 1 116 CYS 116 122 122 CYS CYS A . n A 1 117 LEU 117 123 123 LEU LEU A . n A 1 118 ILE 118 124 124 ILE ILE A . n A 1 119 SER 119 125 125 SER SER A . n A 1 120 GLY 120 126 126 GLY GLY A . n A 1 121 TRP 121 127 127 TRP TRP A . n A 1 122 GLY 122 128 128 GLY GLY A . n A 1 123 ASN 123 129 129 ASN ASN A . n A 1 124 THR 124 130 130 THR THR A . n A 1 125 LYS 125 131 131 LYS LYS A . n A 1 126 SER 126 132 132 SER SER A . n A 1 127 SER 127 133 133 SER SER A . n A 1 128 GLY 128 134 134 GLY GLY A . n A 1 129 THR 129 135 135 THR THR A . n A 1 130 SER 130 136 136 SER SER A . n A 1 131 IYR 131 137 137 IYR IYR A . n A 1 132 PRO 132 138 138 PRO PRO A . n A 1 133 ASP 133 139 139 ASP ASP A . n A 1 134 VAL 134 140 140 VAL VAL A . n A 1 135 LEU 135 141 141 LEU LEU A . n A 1 136 LYS 136 142 142 LYS LYS A . n A 1 137 CYS 137 143 143 CYS CYS A . n A 1 138 LEU 138 144 144 LEU LEU A . n A 1 139 LYS 139 145 145 LYS LYS A . n A 1 140 ALA 140 146 146 ALA ALA A . n A 1 141 PRO 141 147 147 PRO PRO A . n A 1 142 ILE 142 148 148 ILE ILE A . n A 1 143 LEU 143 149 149 LEU LEU A . n A 1 144 SER 144 150 150 SER SER A . n A 1 145 ASP 145 151 151 ASP ASP A . n A 1 146 SER 146 152 152 SER SER A . n A 1 147 SER 147 153 153 SER SER A . n A 1 148 CYS 148 154 154 CYS CYS A . n A 1 149 LYS 149 155 155 LYS LYS A . n A 1 150 SER 150 156 156 SER SER A . n A 1 151 ALA 151 157 157 ALA ALA A . n A 1 152 TYR 152 158 158 TYR TYR A . n A 1 153 PRO 153 159 159 PRO PRO A . n A 1 154 GLY 154 160 160 GLY GLY A . n A 1 155 GLN 155 161 161 GLN GLN A . n A 1 156 ILE 156 162 162 ILE ILE A . n A 1 157 THR 157 163 163 THR THR A . n A 1 158 SER 158 164 164 SER SER A . n A 1 159 ASN 159 165 165 ASN ASN A . n A 1 160 MET 160 166 166 MET MET A . n A 1 161 PHE 161 167 167 PHE PHE A . n A 1 162 CYS 162 168 168 CYS CYS A . n A 1 163 ALA 163 169 169 ALA ALA A . n A 1 164 GLY 164 170 170 GLY GLY A . n A 1 165 TYI 165 171 171 TYI TYI A . n A 1 166 LEU 166 172 172 LEU LEU A . n A 1 167 GLU 167 173 173 GLU GLU A . n A 1 168 GLY 168 174 174 GLY GLY A . n A 1 169 GLY 169 175 175 GLY GLY A . n A 1 170 LYS 170 176 176 LYS LYS A . n A 1 171 ASP 171 177 177 ASP ASP A . n A 1 172 SER 172 178 178 SER SER A . n A 1 173 CYS 173 179 179 CYS CYS A . n A 1 174 GLN 174 180 180 GLN GLN A . n A 1 175 GLY 175 181 181 GLY GLY A . n A 1 176 ASP 176 182 182 ASP ASP A . n A 1 177 SER 177 183 183 SER SER A . n A 1 178 GLY 178 184 184 GLY GLY A . n A 1 179 GLY 179 185 185 GLY GLY A . n A 1 180 PRO 180 186 186 PRO PRO A . n A 1 181 VAL 181 187 187 VAL VAL A . n A 1 182 VAL 182 188 188 VAL VAL A . n A 1 183 CYS 183 189 189 CYS CYS A . n A 1 184 SER 184 190 190 SER SER A . n A 1 185 GLY 185 191 191 GLY GLY A . n A 1 186 LYS 186 192 192 LYS LYS A . n A 1 187 LEU 187 193 193 LEU LEU A . n A 1 188 GLN 188 194 194 GLN GLN A . n A 1 189 GLY 189 195 195 GLY GLY A . n A 1 190 ILE 190 196 196 ILE ILE A . n A 1 191 VAL 191 197 197 VAL VAL A . n A 1 192 SER 192 198 198 SER SER A . n A 1 193 TRP 193 199 199 TRP TRP A . n A 1 194 GLY 194 200 200 GLY GLY A . n A 1 195 SER 195 201 201 SER SER A . n A 1 196 GLY 196 202 202 GLY GLY A . n A 1 197 CYS 197 203 203 CYS CYS A . n A 1 198 ALA 198 204 204 ALA ALA A . n A 1 199 GLN 199 205 205 GLN GLN A . n A 1 200 LYS 200 206 206 LYS LYS A . n A 1 201 ASN 201 207 207 ASN ASN A . n A 1 202 LYS 202 208 208 LYS LYS A . n A 1 203 PRO 203 209 209 PRO PRO A . n A 1 204 GLY 204 210 210 GLY GLY A . n A 1 205 VAL 205 211 211 VAL VAL A . n A 1 206 TYR 206 212 212 TYR TYR A . n A 1 207 THR 207 213 213 THR THR A . n A 1 208 LYS 208 214 214 LYS LYS A . n A 1 209 VAL 209 215 215 VAL VAL A . n A 1 210 CYS 210 216 216 CYS CYS A . n A 1 211 ASN 211 217 217 ASN ASN A . n A 1 212 TYR 212 218 218 TYR TYR A . n A 1 213 VAL 213 219 219 VAL VAL A . n A 1 214 SER 214 220 220 SER SER A . n A 1 215 TRP 215 221 221 TRP TRP A . n A 1 216 ILE 216 222 222 ILE ILE A . n A 1 217 LYS 217 223 223 LYS LYS A . n A 1 218 GLN 218 224 224 GLN GLN A . n A 1 219 THR 219 225 225 THR THR A . n A 1 220 ILE 220 226 226 ILE ILE A . n A 1 221 ALA 221 227 227 ALA ALA A . n A 1 222 SER 222 228 228 SER SER A . n A 1 223 ASN 223 229 229 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 300 300 CA CA A . C 3 IOD 1 401 401 IOD IOD A . D 3 IOD 1 402 402 IOD IOD A . E 3 IOD 1 403 403 IOD IOD A . F 4 HOH 1 404 1 HOH HOH A . F 4 HOH 2 405 2 HOH HOH A . F 4 HOH 3 406 3 HOH HOH A . F 4 HOH 4 407 4 HOH HOH A . F 4 HOH 5 408 5 HOH HOH A . F 4 HOH 6 409 6 HOH HOH A . F 4 HOH 7 410 7 HOH HOH A . F 4 HOH 8 411 8 HOH HOH A . F 4 HOH 9 412 9 HOH HOH A . F 4 HOH 10 413 10 HOH HOH A . F 4 HOH 11 414 11 HOH HOH A . F 4 HOH 12 415 12 HOH HOH A . F 4 HOH 13 416 13 HOH HOH A . F 4 HOH 14 417 14 HOH HOH A . F 4 HOH 15 418 15 HOH HOH A . F 4 HOH 16 419 16 HOH HOH A . F 4 HOH 17 420 17 HOH HOH A . F 4 HOH 18 421 18 HOH HOH A . F 4 HOH 19 422 19 HOH HOH A . F 4 HOH 20 423 20 HOH HOH A . F 4 HOH 21 424 21 HOH HOH A . F 4 HOH 22 425 22 HOH HOH A . F 4 HOH 23 426 23 HOH HOH A . F 4 HOH 24 427 24 HOH HOH A . F 4 HOH 25 428 25 HOH HOH A . F 4 HOH 26 429 26 HOH HOH A . F 4 HOH 27 430 27 HOH HOH A . F 4 HOH 28 431 28 HOH HOH A . F 4 HOH 29 432 29 HOH HOH A . F 4 HOH 30 433 30 HOH HOH A . F 4 HOH 31 434 31 HOH HOH A . F 4 HOH 32 435 32 HOH HOH A . F 4 HOH 33 436 33 HOH HOH A . F 4 HOH 34 437 34 HOH HOH A . F 4 HOH 35 438 35 HOH HOH A . F 4 HOH 36 439 36 HOH HOH A . F 4 HOH 37 440 37 HOH HOH A . F 4 HOH 38 441 38 HOH HOH A . F 4 HOH 39 442 39 HOH HOH A . F 4 HOH 40 443 40 HOH HOH A . F 4 HOH 41 444 41 HOH HOH A . F 4 HOH 42 445 42 HOH HOH A . F 4 HOH 43 446 43 HOH HOH A . F 4 HOH 44 447 44 HOH HOH A . F 4 HOH 45 448 45 HOH HOH A . F 4 HOH 46 449 46 HOH HOH A . F 4 HOH 47 450 47 HOH HOH A . F 4 HOH 48 451 48 HOH HOH A . F 4 HOH 49 452 49 HOH HOH A . F 4 HOH 50 453 50 HOH HOH A . F 4 HOH 51 454 51 HOH HOH A . F 4 HOH 52 455 52 HOH HOH A . F 4 HOH 53 456 53 HOH HOH A . F 4 HOH 54 457 54 HOH HOH A . F 4 HOH 55 458 55 HOH HOH A . F 4 HOH 56 459 56 HOH HOH A . F 4 HOH 57 460 57 HOH HOH A . F 4 HOH 58 461 58 HOH HOH A . F 4 HOH 59 462 59 HOH HOH A . F 4 HOH 60 463 60 HOH HOH A . F 4 HOH 61 464 61 HOH HOH A . F 4 HOH 62 465 62 HOH HOH A . F 4 HOH 63 466 63 HOH HOH A . F 4 HOH 64 467 64 HOH HOH A . F 4 HOH 65 468 65 HOH HOH A . F 4 HOH 66 469 66 HOH HOH A . F 4 HOH 67 470 67 HOH HOH A . F 4 HOH 68 471 68 HOH HOH A . F 4 HOH 69 472 69 HOH HOH A . F 4 HOH 70 473 70 HOH HOH A . F 4 HOH 71 474 71 HOH HOH A . F 4 HOH 72 475 72 HOH HOH A . F 4 HOH 73 476 73 HOH HOH A . F 4 HOH 74 477 74 HOH HOH A . F 4 HOH 75 478 75 HOH HOH A . F 4 HOH 76 479 76 HOH HOH A . F 4 HOH 77 480 77 HOH HOH A . F 4 HOH 78 481 78 HOH HOH A . F 4 HOH 79 482 79 HOH HOH A . F 4 HOH 80 483 80 HOH HOH A . F 4 HOH 81 484 81 HOH HOH A . F 4 HOH 82 485 82 HOH HOH A . F 4 HOH 83 486 83 HOH HOH A . F 4 HOH 84 487 84 HOH HOH A . F 4 HOH 85 488 85 HOH HOH A . F 4 HOH 86 489 86 HOH HOH A . F 4 HOH 87 490 87 HOH HOH A . F 4 HOH 88 491 88 HOH HOH A . F 4 HOH 89 492 89 HOH HOH A . F 4 HOH 90 493 90 HOH HOH A . F 4 HOH 91 494 91 HOH HOH A . F 4 HOH 92 495 92 HOH HOH A . F 4 HOH 93 496 93 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A IYR 42 A IYR 48 ? TYR 3-IODO-TYROSINE 2 A IYR 131 A IYR 137 ? TYR 3-IODO-TYROSINE 3 A TYI 165 A TYI 171 ? TYR 3,5-DIIODOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 52 ? A GLU 58 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A ASN 54 ? A ASN 60 ? 1_555 91.3 ? 2 OE1 ? A GLU 52 ? A GLU 58 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A VAL 57 ? A VAL 63 ? 1_555 169.0 ? 3 O ? A ASN 54 ? A ASN 60 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A VAL 57 ? A VAL 63 ? 1_555 79.8 ? 4 OE1 ? A GLU 52 ? A GLU 58 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OE2 ? A GLU 62 ? A GLU 68 ? 1_555 105.3 ? 5 O ? A ASN 54 ? A ASN 60 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OE2 ? A GLU 62 ? A GLU 68 ? 1_555 149.9 ? 6 O ? A VAL 57 ? A VAL 63 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OE2 ? A GLU 62 ? A GLU 68 ? 1_555 85.5 ? 7 OE1 ? A GLU 52 ? A GLU 58 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 496 ? 1_555 85.5 ? 8 O ? A ASN 54 ? A ASN 60 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 496 ? 1_555 88.9 ? 9 O ? A VAL 57 ? A VAL 63 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 496 ? 1_555 100.7 ? 10 OE2 ? A GLU 62 ? A GLU 68 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 496 ? 1_555 68.0 ? 11 OE1 ? A GLU 52 ? A GLU 58 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 495 ? 1_555 80.3 ? 12 O ? A ASN 54 ? A ASN 60 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 495 ? 1_555 103.0 ? 13 O ? A VAL 57 ? A VAL 63 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 495 ? 1_555 95.3 ? 14 OE2 ? A GLU 62 ? A GLU 68 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 495 ? 1_555 104.5 ? 15 O ? F HOH . ? A HOH 496 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 495 ? 1_555 161.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 59 ? ? -128.39 -80.18 2 1 ASN A 103 ? ? -135.99 -143.68 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'IODIDE ION' IOD 4 water HOH #