data_2D9M # _entry.id 2D9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D9M pdb_00002d9m 10.2210/pdb2d9m/pdb RCSB RCSB025157 ? ? WWPDB D_1000025157 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002012167.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D9M _pdbx_database_status.recvd_initial_deposition_date 2005-12-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of CCCH type zinc-finger domain 3 in zinc finger CCCH-type domain containing 7A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Zinc finger CCCH-type domain containing protein 7A' 7672.447 1 ? ? 'CCCH-type zinc finger motif' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGQYCWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKASGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGQYCWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKASGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002012167.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 TYR n 1 10 CYS n 1 11 TRP n 1 12 GLN n 1 13 HIS n 1 14 ARG n 1 15 PHE n 1 16 PRO n 1 17 THR n 1 18 GLY n 1 19 TYR n 1 20 PHE n 1 21 SER n 1 22 ILE n 1 23 CYS n 1 24 ASP n 1 25 ARG n 1 26 TYR n 1 27 MET n 1 28 ASN n 1 29 GLY n 1 30 THR n 1 31 CYS n 1 32 PRO n 1 33 GLU n 1 34 GLY n 1 35 ASN n 1 36 SER n 1 37 CYS n 1 38 LYS n 1 39 PHE n 1 40 ALA n 1 41 HIS n 1 42 GLY n 1 43 ASN n 1 44 ALA n 1 45 GLU n 1 46 LEU n 1 47 HIS n 1 48 GLU n 1 49 TRP n 1 50 GLU n 1 51 GLU n 1 52 ARG n 1 53 ARG n 1 54 ASP n 1 55 ALA n 1 56 LEU n 1 57 LYS n 1 58 MET n 1 59 LYS n 1 60 LEU n 1 61 ASN n 1 62 LYS n 1 63 ALA n 1 64 SER n 1 65 GLY n 1 66 PRO n 1 67 SER n 1 68 SER n 1 69 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ZC3H7A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050302-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Z3H7A_HUMAN _struct_ref.pdbx_db_accession Q8IWR0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QYCWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA _struct_ref.pdbx_align_begin 892 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D9M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 63 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IWR0 _struct_ref_seq.db_align_beg 892 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 947 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 892 _struct_ref_seq.pdbx_auth_seq_align_end 947 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D9M GLY A 1 ? UNP Q8IWR0 ? ? 'cloning artifact' 885 1 1 2D9M SER A 2 ? UNP Q8IWR0 ? ? 'cloning artifact' 886 2 1 2D9M SER A 3 ? UNP Q8IWR0 ? ? 'cloning artifact' 887 3 1 2D9M GLY A 4 ? UNP Q8IWR0 ? ? 'cloning artifact' 888 4 1 2D9M SER A 5 ? UNP Q8IWR0 ? ? 'cloning artifact' 889 5 1 2D9M SER A 6 ? UNP Q8IWR0 ? ? 'cloning artifact' 890 6 1 2D9M GLY A 7 ? UNP Q8IWR0 ? ? 'cloning artifact' 891 7 1 2D9M SER A 64 ? UNP Q8IWR0 ? ? 'cloning artifact' 948 8 1 2D9M GLY A 65 ? UNP Q8IWR0 ? ? 'cloning artifact' 949 9 1 2D9M PRO A 66 ? UNP Q8IWR0 ? ? 'cloning artifact' 950 10 1 2D9M SER A 67 ? UNP Q8IWR0 ? ? 'cloning artifact' 951 11 1 2D9M SER A 68 ? UNP Q8IWR0 ? ? 'cloning artifact' 952 12 1 2D9M GLY A 69 ? UNP Q8IWR0 ? ? 'cloning artifact' 953 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 50uM ZnCl2+1mM IDA, 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D9M _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D9M _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D9M _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.93191 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2D9M _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D9M _struct.title 'Solution structure of CCCH type zinc-finger domain 3 in zinc finger CCCH-type domain containing 7A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D9M _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;CCCH Zinc-finger, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 23 ? GLY A 29 ? CYS A 907 GLY A 913 1 ? 7 HELX_P HELX_P2 2 GLY A 42 ? LYS A 57 ? GLY A 926 LYS A 941 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 23 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 907 A ZN 1085 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc2 metalc ? ? A CYS 31 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 915 A ZN 1085 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc3 metalc ? ? A CYS 37 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 921 A ZN 1085 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc4 metalc ? ? A HIS 41 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 925 A ZN 1085 1_555 ? ? ? ? ? ? ? 2.337 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 1085 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 1085' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 23 ? CYS A 907 . ? 1_555 ? 2 AC1 4 CYS A 31 ? CYS A 915 . ? 1_555 ? 3 AC1 4 CYS A 37 ? CYS A 921 . ? 1_555 ? 4 AC1 4 HIS A 41 ? HIS A 925 . ? 1_555 ? # _database_PDB_matrix.entry_id 2D9M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D9M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 885 885 GLY GLY A . n A 1 2 SER 2 886 886 SER SER A . n A 1 3 SER 3 887 887 SER SER A . n A 1 4 GLY 4 888 888 GLY GLY A . n A 1 5 SER 5 889 889 SER SER A . n A 1 6 SER 6 890 890 SER SER A . n A 1 7 GLY 7 891 891 GLY GLY A . n A 1 8 GLN 8 892 892 GLN GLN A . n A 1 9 TYR 9 893 893 TYR TYR A . n A 1 10 CYS 10 894 894 CYS CYS A . n A 1 11 TRP 11 895 895 TRP TRP A . n A 1 12 GLN 12 896 896 GLN GLN A . n A 1 13 HIS 13 897 897 HIS HIS A . n A 1 14 ARG 14 898 898 ARG ARG A . n A 1 15 PHE 15 899 899 PHE PHE A . n A 1 16 PRO 16 900 900 PRO PRO A . n A 1 17 THR 17 901 901 THR THR A . n A 1 18 GLY 18 902 902 GLY GLY A . n A 1 19 TYR 19 903 903 TYR TYR A . n A 1 20 PHE 20 904 904 PHE PHE A . n A 1 21 SER 21 905 905 SER SER A . n A 1 22 ILE 22 906 906 ILE ILE A . n A 1 23 CYS 23 907 907 CYS CYS A . n A 1 24 ASP 24 908 908 ASP ASP A . n A 1 25 ARG 25 909 909 ARG ARG A . n A 1 26 TYR 26 910 910 TYR TYR A . n A 1 27 MET 27 911 911 MET MET A . n A 1 28 ASN 28 912 912 ASN ASN A . n A 1 29 GLY 29 913 913 GLY GLY A . n A 1 30 THR 30 914 914 THR THR A . n A 1 31 CYS 31 915 915 CYS CYS A . n A 1 32 PRO 32 916 916 PRO PRO A . n A 1 33 GLU 33 917 917 GLU GLU A . n A 1 34 GLY 34 918 918 GLY GLY A . n A 1 35 ASN 35 919 919 ASN ASN A . n A 1 36 SER 36 920 920 SER SER A . n A 1 37 CYS 37 921 921 CYS CYS A . n A 1 38 LYS 38 922 922 LYS LYS A . n A 1 39 PHE 39 923 923 PHE PHE A . n A 1 40 ALA 40 924 924 ALA ALA A . n A 1 41 HIS 41 925 925 HIS HIS A . n A 1 42 GLY 42 926 926 GLY GLY A . n A 1 43 ASN 43 927 927 ASN ASN A . n A 1 44 ALA 44 928 928 ALA ALA A . n A 1 45 GLU 45 929 929 GLU GLU A . n A 1 46 LEU 46 930 930 LEU LEU A . n A 1 47 HIS 47 931 931 HIS HIS A . n A 1 48 GLU 48 932 932 GLU GLU A . n A 1 49 TRP 49 933 933 TRP TRP A . n A 1 50 GLU 50 934 934 GLU GLU A . n A 1 51 GLU 51 935 935 GLU GLU A . n A 1 52 ARG 52 936 936 ARG ARG A . n A 1 53 ARG 53 937 937 ARG ARG A . n A 1 54 ASP 54 938 938 ASP ASP A . n A 1 55 ALA 55 939 939 ALA ALA A . n A 1 56 LEU 56 940 940 LEU LEU A . n A 1 57 LYS 57 941 941 LYS LYS A . n A 1 58 MET 58 942 942 MET MET A . n A 1 59 LYS 59 943 943 LYS LYS A . n A 1 60 LEU 60 944 944 LEU LEU A . n A 1 61 ASN 61 945 945 ASN ASN A . n A 1 62 LYS 62 946 946 LYS LYS A . n A 1 63 ALA 63 947 947 ALA ALA A . n A 1 64 SER 64 948 948 SER SER A . n A 1 65 GLY 65 949 949 GLY GLY A . n A 1 66 PRO 66 950 950 PRO PRO A . n A 1 67 SER 67 951 951 SER SER A . n A 1 68 SER 68 952 952 SER SER A . n A 1 69 GLY 69 953 953 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1085 _pdbx_nonpoly_scheme.auth_seq_num 1085 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 23 ? A CYS 907 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 SG ? A CYS 31 ? A CYS 915 ? 1_555 113.4 ? 2 SG ? A CYS 23 ? A CYS 907 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 SG ? A CYS 37 ? A CYS 921 ? 1_555 118.5 ? 3 SG ? A CYS 31 ? A CYS 915 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 SG ? A CYS 37 ? A CYS 921 ? 1_555 114.3 ? 4 SG ? A CYS 23 ? A CYS 907 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 NE2 ? A HIS 41 ? A HIS 925 ? 1_555 114.0 ? 5 SG ? A CYS 31 ? A CYS 915 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 NE2 ? A HIS 41 ? A HIS 925 ? 1_555 92.1 ? 6 SG ? A CYS 37 ? A CYS 921 ? 1_555 ZN ? B ZN . ? A ZN 1085 ? 1_555 NE2 ? A HIS 41 ? A HIS 925 ? 1_555 100.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_ref_seq_dif.details' 18 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 900 ? ? -69.77 96.47 2 1 THR A 901 ? ? -34.36 -33.03 3 1 GLU A 917 ? ? -56.11 -71.83 4 1 SER A 920 ? ? -87.04 31.69 5 1 ALA A 947 ? ? -50.44 100.05 6 2 SER A 890 ? ? -96.57 30.40 7 2 GLN A 892 ? ? -105.23 79.80 8 2 CYS A 894 ? ? -100.12 40.35 9 2 TRP A 895 ? ? -52.28 98.54 10 2 ARG A 898 ? ? -47.58 161.17 11 2 PRO A 900 ? ? -69.76 93.22 12 2 THR A 901 ? ? -33.04 -36.49 13 2 PHE A 904 ? ? -97.95 54.39 14 2 GLU A 917 ? ? -63.25 -72.34 15 2 HIS A 925 ? ? -114.20 73.28 16 2 ASN A 945 ? ? -80.77 45.21 17 2 SER A 948 ? ? -34.73 -39.18 18 2 SER A 951 ? ? 36.19 40.77 19 2 SER A 952 ? ? -34.82 129.55 20 3 CYS A 894 ? ? -81.66 43.08 21 3 TRP A 895 ? ? -48.85 100.85 22 3 PRO A 900 ? ? -69.73 99.06 23 3 THR A 901 ? ? -37.30 -27.98 24 3 PHE A 904 ? ? -107.00 55.02 25 4 SER A 889 ? ? -36.21 142.29 26 4 TYR A 893 ? ? -168.07 107.04 27 4 CYS A 894 ? ? -115.03 77.42 28 4 ARG A 898 ? ? -62.73 99.48 29 4 PHE A 899 ? ? -34.04 139.95 30 4 PRO A 900 ? ? -69.73 93.85 31 4 THR A 901 ? ? -32.66 -37.09 32 4 PHE A 904 ? ? -119.31 57.00 33 4 GLU A 917 ? ? -54.82 -70.77 34 4 HIS A 925 ? ? -115.83 73.38 35 4 ARG A 936 ? ? -33.99 -70.25 36 4 MET A 942 ? ? -35.27 -38.63 37 4 PRO A 950 ? ? -69.79 5.44 38 5 SER A 886 ? ? -58.32 91.91 39 5 TYR A 893 ? ? -52.56 94.19 40 5 CYS A 894 ? ? -107.28 40.57 41 5 TRP A 895 ? ? -53.24 93.73 42 5 ARG A 898 ? ? -61.91 96.46 43 5 PHE A 899 ? ? -32.13 139.75 44 5 THR A 901 ? ? -38.12 -31.10 45 5 GLU A 917 ? ? -59.54 -74.81 46 5 LYS A 946 ? ? -90.46 38.43 47 6 TRP A 895 ? ? -67.27 76.20 48 6 PRO A 900 ? ? -69.71 94.62 49 6 THR A 901 ? ? -34.00 -33.10 50 6 MET A 942 ? ? -35.74 -37.53 51 6 LEU A 944 ? ? -104.19 77.92 52 6 SER A 951 ? ? -57.29 96.12 53 7 TYR A 893 ? ? -50.58 96.60 54 7 ARG A 898 ? ? -43.91 166.68 55 7 PRO A 900 ? ? -69.80 93.53 56 7 THR A 901 ? ? -32.45 -36.59 57 7 SER A 920 ? ? -84.31 31.59 58 7 LYS A 943 ? ? -87.44 37.26 59 7 LYS A 946 ? ? 28.48 46.77 60 8 GLN A 892 ? ? -163.18 114.42 61 8 TRP A 895 ? ? -160.79 105.04 62 8 PHE A 899 ? ? -33.14 140.03 63 8 PRO A 900 ? ? -69.75 95.20 64 8 THR A 901 ? ? -34.23 -32.64 65 8 PHE A 904 ? ? -117.76 63.59 66 8 SER A 920 ? ? -84.88 30.22 67 8 PRO A 950 ? ? -69.76 0.38 68 9 SER A 889 ? ? -64.86 -175.02 69 9 SER A 890 ? ? -86.28 30.77 70 9 CYS A 894 ? ? -107.67 77.35 71 9 PRO A 900 ? ? -69.80 96.64 72 9 THR A 901 ? ? -36.50 -28.99 73 9 SER A 920 ? ? -84.95 32.53 74 9 LYS A 941 ? ? -38.48 -29.68 75 10 ARG A 898 ? ? -36.24 153.85 76 10 PRO A 900 ? ? -69.77 93.67 77 10 THR A 901 ? ? -33.66 -34.37 78 10 PHE A 904 ? ? -107.33 62.77 79 10 GLU A 917 ? ? -60.86 -74.17 80 10 HIS A 925 ? ? -119.09 74.81 81 10 MET A 942 ? ? -38.42 -30.19 82 10 SER A 951 ? ? 36.44 41.72 83 11 PRO A 900 ? ? -69.81 92.66 84 11 PHE A 904 ? ? -109.36 44.74 85 11 SER A 920 ? ? -87.17 31.35 86 11 ARG A 936 ? ? -44.38 -70.41 87 11 MET A 942 ? ? -38.50 -39.38 88 11 LYS A 946 ? ? -65.56 98.30 89 11 PRO A 950 ? ? -69.80 2.73 90 11 SER A 951 ? ? -38.20 143.92 91 12 TRP A 895 ? ? -52.79 89.48 92 12 PRO A 900 ? ? -69.72 95.13 93 12 THR A 901 ? ? -34.32 -32.80 94 12 ARG A 936 ? ? -43.01 -70.29 95 13 ARG A 898 ? ? -45.56 99.09 96 13 PHE A 899 ? ? -35.16 140.09 97 13 PRO A 900 ? ? -69.81 95.70 98 13 THR A 901 ? ? -33.34 -37.38 99 13 SER A 920 ? ? -84.31 32.59 100 13 LYS A 943 ? ? -96.61 -62.38 101 13 ALA A 947 ? ? -87.18 41.76 102 14 CYS A 894 ? ? -90.01 37.69 103 14 TRP A 895 ? ? -43.17 106.42 104 14 ARG A 898 ? ? -49.66 170.68 105 14 PRO A 900 ? ? -69.75 95.22 106 14 THR A 901 ? ? -34.17 -36.41 107 14 SER A 952 ? ? -128.29 -55.24 108 15 TRP A 895 ? ? -53.22 97.83 109 15 PRO A 900 ? ? -69.81 92.09 110 15 THR A 901 ? ? -32.60 -35.05 111 15 GLU A 917 ? ? -59.49 -73.42 112 15 MET A 942 ? ? -37.17 -30.39 113 16 SER A 889 ? ? -117.79 72.71 114 16 GLN A 892 ? ? -79.69 44.06 115 16 PRO A 900 ? ? -69.77 94.71 116 16 THR A 901 ? ? -33.01 -38.14 117 16 PHE A 904 ? ? -100.50 43.35 118 16 SER A 920 ? ? -84.78 31.09 119 16 MET A 942 ? ? -37.36 -39.30 120 16 ALA A 947 ? ? -32.49 132.21 121 17 SER A 886 ? ? -69.85 80.26 122 17 PRO A 900 ? ? -69.83 93.36 123 17 THR A 901 ? ? -31.97 -38.91 124 17 SER A 920 ? ? -84.55 32.86 125 17 MET A 942 ? ? -39.07 -32.69 126 17 SER A 948 ? ? 36.87 42.40 127 17 PRO A 950 ? ? -69.70 88.33 128 18 TYR A 893 ? ? -56.71 88.50 129 18 TRP A 895 ? ? -56.61 87.01 130 18 PRO A 900 ? ? -69.77 97.23 131 18 THR A 901 ? ? -36.09 -29.94 132 18 PHE A 904 ? ? -96.75 58.46 133 18 GLU A 917 ? ? -58.38 -72.40 134 18 HIS A 925 ? ? -114.57 77.95 135 19 SER A 890 ? ? -85.08 30.82 136 19 GLN A 892 ? ? -82.36 43.35 137 19 ARG A 898 ? ? -44.32 155.79 138 19 PRO A 900 ? ? -69.84 93.18 139 19 THR A 901 ? ? -32.38 -38.12 140 19 PHE A 904 ? ? -97.57 50.45 141 19 SER A 920 ? ? -89.14 31.85 142 19 LYS A 946 ? ? -34.71 122.64 143 19 ALA A 947 ? ? -46.98 150.85 144 20 CYS A 894 ? ? -82.40 47.73 145 20 TRP A 895 ? ? -45.76 96.54 146 20 ARG A 898 ? ? -35.03 152.23 147 20 PHE A 904 ? ? -119.36 57.25 148 20 GLU A 917 ? ? -59.51 -73.08 149 20 MET A 942 ? ? -39.31 154.43 150 20 PRO A 950 ? ? -69.77 95.31 151 20 SER A 951 ? ? -35.63 113.47 152 20 SER A 952 ? ? -36.28 115.15 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #