data_2D9X # _entry.id 2D9X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D9X pdb_00002d9x 10.2210/pdb2d9x/pdb RCSB RCSB025168 ? ? WWPDB D_1000025168 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003000224.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D9X _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Sato, M.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Sato, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Oxysterol binding protein-related protein 11' _entity.formula_weight 13301.526 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'OSBP-related protein 11, ORP-11' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGE QYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGE QYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003000224.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 ASN n 1 10 VAL n 1 11 TYR n 1 12 GLY n 1 13 TYR n 1 14 LEU n 1 15 MET n 1 16 LYS n 1 17 TYR n 1 18 THR n 1 19 ASN n 1 20 LEU n 1 21 VAL n 1 22 THR n 1 23 GLY n 1 24 TRP n 1 25 GLN n 1 26 TYR n 1 27 ARG n 1 28 PHE n 1 29 PHE n 1 30 VAL n 1 31 LEU n 1 32 ASN n 1 33 ASN n 1 34 GLU n 1 35 ALA n 1 36 GLY n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 TYR n 1 41 PHE n 1 42 VAL n 1 43 ASN n 1 44 GLU n 1 45 GLN n 1 46 SER n 1 47 ARG n 1 48 ASN n 1 49 GLN n 1 50 LYS n 1 51 PRO n 1 52 ARG n 1 53 GLY n 1 54 THR n 1 55 LEU n 1 56 GLN n 1 57 LEU n 1 58 ALA n 1 59 GLY n 1 60 ALA n 1 61 VAL n 1 62 ILE n 1 63 SER n 1 64 PRO n 1 65 SER n 1 66 ASP n 1 67 GLU n 1 68 ASP n 1 69 SER n 1 70 HIS n 1 71 THR n 1 72 PHE n 1 73 THR n 1 74 VAL n 1 75 ASN n 1 76 ALA n 1 77 ALA n 1 78 SER n 1 79 GLY n 1 80 GLU n 1 81 GLN n 1 82 TYR n 1 83 LYS n 1 84 LEU n 1 85 ARG n 1 86 ALA n 1 87 THR n 1 88 ASP n 1 89 ALA n 1 90 LYS n 1 91 GLU n 1 92 ARG n 1 93 GLN n 1 94 HIS n 1 95 TRP n 1 96 VAL n 1 97 SER n 1 98 ARG n 1 99 LEU n 1 100 GLN n 1 101 ILE n 1 102 CYS n 1 103 THR n 1 104 GLN n 1 105 HIS n 1 106 HIS n 1 107 THR n 1 108 GLU n 1 109 ALA n 1 110 ILE n 1 111 GLY n 1 112 LYS n 1 113 ASN n 1 114 ASN n 1 115 SER n 1 116 GLY n 1 117 PRO n 1 118 SER n 1 119 SER n 1 120 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene OSBPL11 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050404-14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OSR11_HUMAN _struct_ref.pdbx_db_accession Q9BXB4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRAT DAKERQHWVSRLQICTQHHTEAIGKNN ; _struct_ref.pdbx_align_begin 59 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D9X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BXB4 _struct_ref_seq.db_align_beg 59 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 165 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D9X GLY A 1 ? UNP Q9BXB4 ? ? 'cloning artifact' 1 1 1 2D9X SER A 2 ? UNP Q9BXB4 ? ? 'cloning artifact' 2 2 1 2D9X SER A 3 ? UNP Q9BXB4 ? ? 'cloning artifact' 3 3 1 2D9X GLY A 4 ? UNP Q9BXB4 ? ? 'cloning artifact' 4 4 1 2D9X SER A 5 ? UNP Q9BXB4 ? ? 'cloning artifact' 5 5 1 2D9X SER A 6 ? UNP Q9BXB4 ? ? 'cloning artifact' 6 6 1 2D9X GLY A 7 ? UNP Q9BXB4 ? ? 'cloning artifact' 7 7 1 2D9X SER A 115 ? UNP Q9BXB4 ? ? 'cloning artifact' 115 8 1 2D9X GLY A 116 ? UNP Q9BXB4 ? ? 'cloning artifact' 116 9 1 2D9X PRO A 117 ? UNP Q9BXB4 ? ? 'cloning artifact' 117 10 1 2D9X SER A 118 ? UNP Q9BXB4 ? ? 'cloning artifact' 118 11 1 2D9X SER A 119 ? UNP Q9BXB4 ? ? 'cloning artifact' 119 12 1 2D9X GLY A 120 ? UNP Q9BXB4 ? ? 'cloning artifact' 120 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.16mM PH domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D9X _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D9X _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D9X _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2D9X _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D9X _struct.title 'Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D9X _struct_keywords.pdbx_keywords 'LIPID TRANSPORT' _struct_keywords.text ;PH domain, OSBP-related protein 11, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIPID TRANSPORT ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 89 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 109 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 89 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 109 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? LYS A 16 ? VAL A 10 LYS A 16 A 2 GLN A 25 ? LEU A 31 ? GLN A 25 LEU A 31 A 3 LEU A 37 ? PHE A 41 ? LEU A 37 PHE A 41 A 4 GLY A 53 ? GLN A 56 ? GLY A 53 GLN A 56 B 1 ILE A 62 ? SER A 63 ? ILE A 62 SER A 63 B 2 PHE A 72 ? VAL A 74 ? PHE A 72 VAL A 74 B 3 TYR A 82 ? ARG A 85 ? TYR A 82 ARG A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 14 O ARG A 27 ? O ARG A 27 A 2 3 N PHE A 28 ? N PHE A 28 O PHE A 41 ? O PHE A 41 A 3 4 N LEU A 38 ? N LEU A 38 O LEU A 55 ? O LEU A 55 B 1 2 N SER A 63 ? N SER A 63 O THR A 73 ? O THR A 73 B 2 3 N VAL A 74 ? N VAL A 74 O TYR A 82 ? O TYR A 82 # _database_PDB_matrix.entry_id 2D9X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D9X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX Determination Method: Author determined ; 700 ;SHEET Determination Method: Author determined ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 19 ? ? -172.62 -176.27 2 1 SER A 46 ? ? -111.07 50.87 3 1 ALA A 58 ? ? -45.79 102.85 4 1 HIS A 106 ? ? -92.38 -64.36 5 1 LYS A 112 ? ? -36.04 127.51 6 1 PRO A 117 ? ? -69.79 2.80 7 2 SER A 6 ? ? -43.64 103.47 8 2 VAL A 42 ? ? -36.08 -37.15 9 2 SER A 46 ? ? -90.18 52.25 10 2 ASN A 48 ? ? -86.62 40.75 11 2 ALA A 58 ? ? -42.14 101.74 12 2 SER A 65 ? ? -53.20 -179.55 13 2 ASP A 66 ? ? -131.01 -47.51 14 2 GLU A 67 ? ? -39.61 -74.15 15 2 ASP A 68 ? ? -62.95 -175.65 16 2 SER A 69 ? ? -96.05 -60.40 17 2 PHE A 72 ? ? -174.95 148.80 18 2 VAL A 96 ? ? -38.70 -36.85 19 2 HIS A 105 ? ? -38.23 -28.02 20 2 ALA A 109 ? ? -37.19 -39.23 21 2 SER A 115 ? ? -162.02 113.05 22 3 ASN A 9 ? ? -35.81 141.44 23 3 VAL A 42 ? ? -35.52 -31.16 24 3 SER A 46 ? ? -77.56 47.44 25 3 ALA A 58 ? ? -42.78 94.28 26 3 PHE A 72 ? ? -170.77 149.37 27 4 SER A 2 ? ? 35.98 43.21 28 4 ASN A 43 ? ? -170.16 -177.10 29 4 ALA A 58 ? ? -43.67 105.01 30 4 GLU A 67 ? ? -82.66 -71.54 31 4 HIS A 106 ? ? -92.06 -62.04 32 4 ALA A 109 ? ? -39.61 -37.33 33 5 SER A 2 ? ? 39.99 48.47 34 5 SER A 5 ? ? -38.58 132.62 35 5 GLN A 49 ? ? -55.09 177.17 36 5 ALA A 58 ? ? -56.88 98.50 37 5 ASP A 66 ? ? -131.68 -36.79 38 5 HIS A 105 ? ? -39.90 -26.02 39 5 ASN A 114 ? ? -39.55 120.60 40 6 SER A 5 ? ? -170.16 132.52 41 6 LEU A 20 ? ? -68.38 -74.57 42 6 SER A 46 ? ? -94.95 41.97 43 6 ASN A 48 ? ? -84.20 33.20 44 6 ALA A 58 ? ? -45.81 107.91 45 6 ASP A 66 ? ? -132.10 -35.23 46 6 PHE A 72 ? ? -174.98 149.83 47 6 ILE A 110 ? ? -37.58 107.33 48 6 SER A 118 ? ? 34.58 45.81 49 7 SER A 6 ? ? -167.80 110.91 50 7 GLU A 8 ? ? -89.13 42.52 51 7 LEU A 20 ? ? -68.27 -74.40 52 7 GLN A 45 ? ? -36.45 -30.22 53 7 SER A 46 ? ? -88.57 47.84 54 7 ALA A 58 ? ? -40.39 94.51 55 7 HIS A 106 ? ? -91.87 -64.14 56 7 ALA A 109 ? ? -36.98 -38.81 57 8 SER A 46 ? ? -95.84 52.95 58 8 GLN A 49 ? ? -46.22 157.10 59 8 ALA A 58 ? ? -49.53 102.30 60 8 ALA A 86 ? ? -55.92 -179.84 61 8 SER A 97 ? ? -66.61 -70.65 62 8 HIS A 106 ? ? -90.61 -66.13 63 8 THR A 107 ? ? -39.59 -34.17 64 8 PRO A 117 ? ? -69.78 90.86 65 9 TYR A 17 ? ? -59.80 81.92 66 9 SER A 46 ? ? -117.35 68.29 67 9 ASN A 48 ? ? -95.50 33.21 68 9 ALA A 58 ? ? -45.97 93.74 69 9 GLU A 67 ? ? -38.89 -74.51 70 9 HIS A 105 ? ? -38.29 -30.06 71 9 SER A 119 ? ? -167.16 113.28 72 10 ASN A 19 ? ? -173.60 -176.62 73 10 SER A 46 ? ? -103.84 54.84 74 10 GLN A 49 ? ? -47.50 166.47 75 10 ALA A 58 ? ? -45.59 96.99 76 10 SER A 65 ? ? -59.04 174.63 77 10 GLU A 67 ? ? -86.06 -72.47 78 10 SER A 97 ? ? -66.80 -70.68 79 10 THR A 107 ? ? -39.06 -31.75 80 10 SER A 115 ? ? -36.10 133.74 81 11 SER A 6 ? ? -49.67 167.25 82 11 ALA A 58 ? ? -39.91 96.33 83 11 HIS A 105 ? ? -36.45 -30.31 84 11 PRO A 117 ? ? -69.82 -173.55 85 12 SER A 5 ? ? -65.84 78.95 86 12 TYR A 17 ? ? -69.64 95.83 87 12 GLN A 49 ? ? -46.37 154.04 88 12 ALA A 58 ? ? -42.05 99.25 89 12 SER A 65 ? ? -49.47 166.64 90 12 ASN A 75 ? ? -68.20 -175.89 91 12 ARG A 92 ? ? -68.63 -70.37 92 12 HIS A 105 ? ? -38.84 -26.15 93 13 ASN A 19 ? ? -172.94 -178.89 94 13 SER A 46 ? ? -99.82 39.46 95 13 ALA A 58 ? ? -43.99 100.28 96 13 ALA A 86 ? ? -47.36 161.58 97 13 ASN A 113 ? ? -40.21 160.60 98 13 ASN A 114 ? ? -133.66 -44.40 99 13 PRO A 117 ? ? -69.80 2.49 100 14 SER A 5 ? ? -38.47 126.06 101 14 THR A 18 ? ? -104.57 -64.37 102 14 LEU A 20 ? ? -65.66 -75.11 103 14 SER A 46 ? ? -83.32 49.40 104 14 ARG A 47 ? ? -90.36 -66.87 105 14 ALA A 58 ? ? -44.85 105.30 106 14 SER A 65 ? ? -54.80 175.16 107 14 GLU A 67 ? ? -92.06 -66.77 108 14 PHE A 72 ? ? -175.09 146.32 109 14 ASN A 75 ? ? -59.28 -178.90 110 15 SER A 5 ? ? -95.22 42.10 111 15 GLU A 8 ? ? -103.19 78.59 112 15 SER A 46 ? ? -97.08 38.99 113 15 ALA A 58 ? ? -43.49 103.15 114 15 ASP A 66 ? ? -130.12 -35.31 115 15 HIS A 94 ? ? -57.11 -74.34 116 15 SER A 115 ? ? -171.69 147.81 117 16 SER A 3 ? ? -55.62 105.41 118 16 GLN A 45 ? ? -35.35 -39.75 119 16 SER A 46 ? ? -102.30 52.66 120 16 GLN A 49 ? ? -45.05 167.87 121 16 ALA A 58 ? ? -40.79 102.50 122 16 GLU A 67 ? ? -39.89 -71.54 123 16 PHE A 72 ? ? -175.26 147.83 124 16 ASN A 75 ? ? -64.41 -176.97 125 16 HIS A 106 ? ? -92.33 -61.58 126 16 ASN A 114 ? ? -97.19 40.28 127 16 SER A 118 ? ? -35.77 -35.23 128 17 GLU A 8 ? ? -107.49 79.84 129 17 ASN A 9 ? ? -169.82 109.58 130 17 THR A 18 ? ? -128.40 -67.79 131 17 GLU A 34 ? ? -100.02 -70.75 132 17 ALA A 58 ? ? -43.87 93.11 133 17 SER A 65 ? ? -62.28 -175.88 134 17 ASP A 66 ? ? -131.39 -41.98 135 17 SER A 97 ? ? -81.86 -70.29 136 17 HIS A 105 ? ? -37.36 -30.41 137 17 ALA A 109 ? ? -36.75 -31.23 138 17 ILE A 110 ? ? -56.38 102.16 139 18 GLN A 49 ? ? -44.76 -75.67 140 18 LYS A 50 ? ? -175.12 136.05 141 18 ALA A 58 ? ? -42.84 94.50 142 18 SER A 65 ? ? -54.57 172.50 143 18 GLU A 67 ? ? -55.00 -73.36 144 18 PHE A 72 ? ? -175.21 148.15 145 18 ASN A 75 ? ? -58.47 -175.87 146 18 ARG A 98 ? ? -36.11 -31.58 147 18 HIS A 105 ? ? -36.96 -29.27 148 19 VAL A 42 ? ? -36.23 -38.33 149 19 SER A 46 ? ? -99.70 44.19 150 19 GLN A 49 ? ? -48.34 165.81 151 19 ALA A 58 ? ? -45.71 93.21 152 19 GLU A 67 ? ? -34.72 -74.98 153 19 PHE A 72 ? ? -175.20 148.88 154 19 ALA A 89 ? ? -48.68 -18.92 155 19 HIS A 106 ? ? -94.37 -64.82 156 19 SER A 115 ? ? -174.03 125.07 157 19 PRO A 117 ? ? -69.70 -175.89 158 19 SER A 118 ? ? -174.48 116.41 159 20 LEU A 20 ? ? -72.59 -75.06 160 20 GLU A 44 ? ? -35.75 -38.70 161 20 SER A 46 ? ? -85.75 47.14 162 20 ASN A 48 ? ? -78.27 45.85 163 20 GLN A 49 ? ? -131.47 -71.51 164 20 LYS A 50 ? ? -175.39 132.84 165 20 ALA A 58 ? ? -44.89 101.41 166 20 GLU A 67 ? ? -82.38 -70.65 167 20 ASP A 68 ? ? -47.86 155.36 168 20 ILE A 110 ? ? -36.88 114.65 169 20 LYS A 112 ? ? -39.27 116.10 #