data_2DA0 # _entry.id 2DA0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DA0 pdb_00002da0 10.2210/pdb2da0/pdb RCSB RCSB025171 ? ? WWPDB D_1000025171 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002001223.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DA0 _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Tomizawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the PH domain of PIP2-dependent ARF1 GTPase-activating protein from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Tomizawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '130-kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein' _entity.formula_weight 12630.166 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;PIP2-dependent ARF1 GAP, ADP-ribosylation factor-directed GTPase-activating protein 1, ARF GTPase-activating protein 1, Development and differentiation-enhancing factor 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYH FQAEDEQDYVAWISVLTNSKEEALTMAFSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYH FQAEDEQDYVAWISVLTNSKEEALTMAFSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002001223.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 GLY n 1 10 SER n 1 11 GLU n 1 12 LYS n 1 13 LYS n 1 14 GLY n 1 15 TYR n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 LYS n 1 20 SER n 1 21 ASP n 1 22 GLY n 1 23 ILE n 1 24 ARG n 1 25 LYS n 1 26 VAL n 1 27 TRP n 1 28 GLN n 1 29 ARG n 1 30 ARG n 1 31 LYS n 1 32 CYS n 1 33 SER n 1 34 VAL n 1 35 LYS n 1 36 ASN n 1 37 GLY n 1 38 ILE n 1 39 LEU n 1 40 THR n 1 41 ILE n 1 42 SER n 1 43 HIS n 1 44 ALA n 1 45 THR n 1 46 SER n 1 47 ASN n 1 48 ARG n 1 49 GLN n 1 50 PRO n 1 51 ALA n 1 52 LYS n 1 53 LEU n 1 54 ASN n 1 55 LEU n 1 56 LEU n 1 57 THR n 1 58 CYS n 1 59 GLN n 1 60 VAL n 1 61 LYS n 1 62 PRO n 1 63 ASN n 1 64 ALA n 1 65 GLU n 1 66 ASP n 1 67 LYS n 1 68 LYS n 1 69 SER n 1 70 PHE n 1 71 ASP n 1 72 LEU n 1 73 ILE n 1 74 SER n 1 75 HIS n 1 76 ASN n 1 77 ARG n 1 78 THR n 1 79 TYR n 1 80 HIS n 1 81 PHE n 1 82 GLN n 1 83 ALA n 1 84 GLU n 1 85 ASP n 1 86 GLU n 1 87 GLN n 1 88 ASP n 1 89 TYR n 1 90 VAL n 1 91 ALA n 1 92 TRP n 1 93 ILE n 1 94 SER n 1 95 VAL n 1 96 LEU n 1 97 THR n 1 98 ASN n 1 99 SER n 1 100 LYS n 1 101 GLU n 1 102 GLU n 1 103 ALA n 1 104 LEU n 1 105 THR n 1 106 MET n 1 107 ALA n 1 108 PHE n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 SER n 1 113 SER n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ASAP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050801-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DDEF1_HUMAN _struct_ref.pdbx_db_accession Q9ULH1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQ DYVAWISVLTNSKEEALTMAF ; _struct_ref.pdbx_align_begin 150 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DA0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ULH1 _struct_ref_seq.db_align_beg 150 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DA0 GLY A 1 ? UNP Q9ULH1 ? ? 'cloning artifact' 1 1 1 2DA0 SER A 2 ? UNP Q9ULH1 ? ? 'cloning artifact' 2 2 1 2DA0 SER A 3 ? UNP Q9ULH1 ? ? 'cloning artifact' 3 3 1 2DA0 GLY A 4 ? UNP Q9ULH1 ? ? 'cloning artifact' 4 4 1 2DA0 SER A 5 ? UNP Q9ULH1 ? ? 'cloning artifact' 5 5 1 2DA0 SER A 6 ? UNP Q9ULH1 ? ? 'cloning artifact' 6 6 1 2DA0 GLY A 7 ? UNP Q9ULH1 ? ? 'cloning artifact' 7 7 1 2DA0 SER A 109 ? UNP Q9ULH1 ? ? 'cloning artifact' 109 8 1 2DA0 GLY A 110 ? UNP Q9ULH1 ? ? 'cloning artifact' 110 9 1 2DA0 PRO A 111 ? UNP Q9ULH1 ? ? 'cloning artifact' 111 10 1 2DA0 SER A 112 ? UNP Q9ULH1 ? ? 'cloning artifact' 112 11 1 2DA0 SER A 113 ? UNP Q9ULH1 ? ? 'cloning artifact' 113 12 1 2DA0 GLY A 114 ? UNP Q9ULH1 ? ? 'cloning artifact' 114 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.18mM PH domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DA0 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DA0 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DA0 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DA0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DA0 _struct.title 'Solution structure of the PH domain of PIP2-dependent ARF1 GTPase-activating protein from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DA0 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;PH domain, ARF GTPase-activating protein 1, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 86 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 105 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 86 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 105 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 51 ? ASN A 54 ? ALA A 51 ASN A 54 A 2 ILE A 38 ? ILE A 41 ? ILE A 38 ILE A 41 A 3 TRP A 27 ? LYS A 35 ? TRP A 27 LYS A 35 A 4 LYS A 12 ? LYS A 19 ? LYS A 12 LYS A 19 A 5 ARG A 77 ? GLN A 82 ? ARG A 77 GLN A 82 A 6 PHE A 70 ? SER A 74 ? PHE A 70 SER A 74 A 7 GLN A 59 ? PRO A 62 ? GLN A 59 PRO A 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 53 ? O LEU A 53 N LEU A 39 ? N LEU A 39 A 2 3 O THR A 40 ? O THR A 40 N SER A 33 ? N SER A 33 A 3 4 O ARG A 30 ? O ARG A 30 N LEU A 16 ? N LEU A 16 A 4 5 N LEU A 17 ? N LEU A 17 O GLN A 82 ? O GLN A 82 A 5 6 O ARG A 77 ? O ARG A 77 N SER A 74 ? N SER A 74 A 6 7 O ASP A 71 ? O ASP A 71 N LYS A 61 ? N LYS A 61 # _database_PDB_matrix.entry_id 2DA0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DA0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 MET 106 106 106 MET MET A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 10 ? ? -92.18 37.11 2 1 SER A 20 ? ? -45.47 168.80 3 1 PRO A 50 ? ? -69.79 -176.31 4 1 ASN A 63 ? ? -38.83 157.94 5 1 GLU A 65 ? ? -122.19 -56.04 6 1 ASP A 66 ? ? -56.15 83.64 7 1 HIS A 75 ? ? -46.85 107.61 8 1 VAL A 95 ? ? -72.02 -70.33 9 2 SER A 3 ? ? -39.30 127.22 10 2 ASP A 21 ? ? -46.39 162.56 11 2 SER A 46 ? ? -35.50 93.55 12 2 PRO A 50 ? ? -69.79 -176.89 13 2 ASN A 63 ? ? -47.77 174.54 14 2 LYS A 67 ? ? -50.85 178.41 15 2 SER A 69 ? ? -173.27 115.77 16 2 VAL A 95 ? ? -71.17 -70.94 17 2 THR A 105 ? ? -39.97 -27.64 18 2 ALA A 107 ? ? -33.40 139.76 19 3 SER A 2 ? ? -46.47 158.03 20 3 SER A 3 ? ? -82.14 42.71 21 3 ASN A 63 ? ? -55.24 -176.63 22 3 ALA A 64 ? ? -131.52 -44.07 23 3 LYS A 68 ? ? -117.29 58.48 24 3 SER A 113 ? ? -37.74 115.85 25 4 SER A 20 ? ? -68.99 96.34 26 4 LYS A 25 ? ? -64.78 96.42 27 4 HIS A 43 ? ? -131.67 -51.13 28 4 SER A 46 ? ? -91.10 39.59 29 4 ARG A 48 ? ? -119.56 -71.33 30 4 GLN A 49 ? ? -173.71 139.76 31 4 PRO A 50 ? ? -69.81 -167.04 32 4 LYS A 68 ? ? 34.51 40.17 33 4 HIS A 75 ? ? -43.23 105.03 34 4 ASN A 76 ? ? 36.17 39.58 35 4 GLU A 102 ? ? -48.81 -19.88 36 4 PHE A 108 ? ? 38.85 50.27 37 4 PRO A 111 ? ? -69.80 2.27 38 5 ILE A 23 ? ? -126.77 -58.76 39 5 ALA A 44 ? ? -124.51 -73.41 40 5 ASN A 63 ? ? -46.36 157.05 41 5 HIS A 75 ? ? -45.12 102.22 42 5 VAL A 95 ? ? -71.03 -70.53 43 5 PHE A 108 ? ? -45.29 106.17 44 6 SER A 6 ? ? -43.37 156.84 45 6 ASP A 21 ? ? -34.53 149.52 46 6 LYS A 25 ? ? -84.67 34.23 47 6 HIS A 43 ? ? -172.70 149.81 48 6 ALA A 44 ? ? 34.21 48.87 49 6 THR A 45 ? ? -68.12 92.65 50 6 HIS A 75 ? ? -40.07 103.03 51 6 ASN A 76 ? ? 37.72 39.72 52 6 VAL A 95 ? ? -72.14 -70.49 53 6 SER A 113 ? ? -51.35 107.48 54 7 PRO A 50 ? ? -69.78 -173.58 55 7 ASN A 63 ? ? -52.95 176.75 56 7 ASP A 66 ? ? -56.07 -176.44 57 7 HIS A 75 ? ? -38.97 105.15 58 7 VAL A 95 ? ? -70.47 -71.01 59 7 SER A 99 ? ? -37.03 -37.70 60 8 LYS A 12 ? ? -163.42 115.18 61 8 LYS A 25 ? ? -113.94 61.92 62 8 ARG A 48 ? ? -57.70 -72.81 63 8 PRO A 50 ? ? -69.78 -164.60 64 8 CYS A 58 ? ? -49.51 167.65 65 8 ASN A 63 ? ? -47.22 174.52 66 8 ASP A 66 ? ? -69.02 -177.43 67 8 HIS A 75 ? ? -44.30 99.71 68 8 VAL A 95 ? ? -70.81 -70.63 69 9 SER A 46 ? ? -65.94 78.84 70 9 PRO A 50 ? ? -69.76 -166.69 71 9 LYS A 68 ? ? -106.64 54.40 72 9 ASN A 76 ? ? 44.98 28.03 73 9 VAL A 95 ? ? -71.42 -70.11 74 9 PRO A 111 ? ? -69.74 0.44 75 10 HIS A 43 ? ? 34.53 50.09 76 10 THR A 45 ? ? -133.65 -39.44 77 10 ASN A 47 ? ? -39.60 -38.03 78 10 ARG A 48 ? ? -47.54 154.44 79 10 GLN A 49 ? ? -37.55 147.85 80 10 VAL A 95 ? ? -73.58 -70.29 81 10 SER A 99 ? ? -36.38 -36.63 82 10 SER A 112 ? ? -37.69 140.40 83 11 LYS A 25 ? ? -114.62 59.24 84 11 ASN A 47 ? ? 74.54 37.90 85 11 PRO A 50 ? ? -69.79 -170.60 86 11 HIS A 75 ? ? -39.33 92.77 87 11 VAL A 90 ? ? -38.47 -36.96 88 11 VAL A 95 ? ? -71.15 -71.02 89 11 PHE A 108 ? ? 34.43 34.12 90 11 SER A 112 ? ? -49.76 161.32 91 12 SER A 2 ? ? -93.23 -61.15 92 12 SER A 20 ? ? -58.93 106.98 93 12 ASP A 21 ? ? -43.56 156.15 94 12 THR A 45 ? ? -59.47 91.86 95 12 ASN A 47 ? ? -82.27 40.06 96 12 CYS A 58 ? ? -41.72 163.01 97 12 ASN A 63 ? ? -56.48 175.22 98 12 LYS A 68 ? ? -90.51 48.67 99 12 HIS A 75 ? ? -58.93 96.36 100 12 VAL A 95 ? ? -69.32 -70.83 101 12 ALA A 107 ? ? -35.64 153.30 102 13 LYS A 25 ? ? -107.24 49.94 103 13 HIS A 43 ? ? 70.76 51.63 104 13 ASN A 47 ? ? -55.40 95.52 105 13 ARG A 48 ? ? 35.20 54.67 106 13 ASN A 63 ? ? -61.86 -177.61 107 13 ALA A 64 ? ? -124.84 -55.57 108 13 LYS A 68 ? ? -106.73 51.92 109 13 HIS A 75 ? ? -53.60 94.30 110 13 SER A 113 ? ? -68.42 80.69 111 14 LYS A 25 ? ? -108.34 45.06 112 14 SER A 46 ? ? -37.43 -29.25 113 14 GLN A 49 ? ? -37.81 138.14 114 14 PRO A 50 ? ? -69.70 -171.92 115 14 VAL A 95 ? ? -71.33 -70.75 116 14 SER A 99 ? ? -36.08 -37.94 117 14 THR A 105 ? ? -37.90 -27.84 118 14 ALA A 107 ? ? -33.16 141.98 119 15 SER A 20 ? ? -59.29 -175.00 120 15 ASP A 21 ? ? -62.26 -175.05 121 15 LYS A 25 ? ? 38.36 52.03 122 15 GLN A 49 ? ? -170.38 132.75 123 15 PRO A 50 ? ? -69.84 -168.09 124 15 HIS A 75 ? ? -36.89 102.27 125 15 VAL A 95 ? ? -75.86 -70.84 126 15 LEU A 96 ? ? -33.50 -38.83 127 16 SER A 2 ? ? -166.28 115.11 128 16 HIS A 43 ? ? -59.22 176.38 129 16 SER A 46 ? ? 34.42 36.41 130 16 ASN A 63 ? ? -38.94 158.82 131 16 LYS A 68 ? ? -103.03 54.71 132 16 VAL A 95 ? ? -70.47 -70.65 133 16 SER A 99 ? ? -36.52 -36.78 134 16 THR A 105 ? ? -38.83 -39.89 135 17 SER A 3 ? ? -36.81 118.17 136 17 LYS A 25 ? ? -98.97 58.28 137 17 HIS A 43 ? ? -36.33 110.08 138 17 SER A 46 ? ? -63.70 87.18 139 17 ALA A 64 ? ? -122.68 -54.86 140 17 HIS A 75 ? ? -59.78 104.74 141 17 ARG A 77 ? ? -170.78 149.42 142 17 VAL A 95 ? ? -69.10 -70.04 143 18 PRO A 50 ? ? -69.79 -170.79 144 18 THR A 57 ? ? -131.59 -32.37 145 18 ASN A 63 ? ? -44.25 154.48 146 18 ALA A 64 ? ? -105.54 -60.20 147 19 SER A 5 ? ? -109.23 41.88 148 19 ASP A 21 ? ? -101.26 46.50 149 19 ILE A 23 ? ? -118.62 -72.87 150 19 ALA A 44 ? ? -46.83 174.22 151 19 ASN A 63 ? ? -43.73 168.15 152 19 LYS A 68 ? ? 34.91 54.93 153 19 VAL A 90 ? ? -37.81 -31.75 154 19 VAL A 95 ? ? -77.63 -70.77 155 19 PHE A 108 ? ? -36.43 136.00 156 20 ARG A 48 ? ? -64.75 77.69 157 20 GLN A 49 ? ? -173.85 128.01 158 20 PRO A 50 ? ? -69.77 -163.98 159 20 ASN A 63 ? ? -54.09 177.13 160 20 ASP A 66 ? ? -59.90 87.87 161 20 ASN A 76 ? ? 34.29 39.86 162 20 PRO A 111 ? ? -69.81 95.64 #