HEADER DNA BINDING PROTEIN 13-DEC-05 2DA6 TITLE SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HEPATOCYTE NUCLEAR FACTOR TITLE 2 1-BETA (HNF-1BETA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: HNF-1BETA, HNF-1B, VARIANT HEPATIC NUCLEAR FACTOR 1, VHNF1, COMPND 6 HOMEOPROTEIN LFB3, TRANSCRIPTION FACTOR 2, TCF-2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNF1B; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX-TURN-HELIX KEYWDS 2 MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DA6 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DA6 1 VERSN REVDAT 1 26-DEC-06 2DA6 0 JRNL AUTH S.OHNISHI,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HEPATOCYTE JRNL TITL 2 NUCLEAR FACTOR 1-BETA (HNF-1BETA) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DA6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025177. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM PROTEIN U-15N,13C; 20MM D REMARK 210 -TRIS-HCL (PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 38 -19.91 -47.30 REMARK 500 1 VAL A 53 172.17 -56.61 REMARK 500 1 LEU A 61 -36.34 -34.47 REMARK 500 1 SER A 95 44.74 -86.27 REMARK 500 1 ASN A 96 148.61 -174.72 REMARK 500 1 SER A 101 144.69 -174.02 REMARK 500 2 PHE A 11 107.09 -172.24 REMARK 500 2 VAL A 53 173.97 -60.00 REMARK 500 2 LEU A 61 -35.63 -39.73 REMARK 500 2 ASP A 91 176.79 -55.62 REMARK 500 2 PRO A 99 2.40 -69.75 REMARK 500 3 SER A 5 109.62 -163.04 REMARK 500 3 SER A 6 134.06 -37.91 REMARK 500 3 LEU A 61 -34.58 -39.11 REMARK 500 3 SER A 95 43.85 -108.60 REMARK 500 3 SER A 101 46.61 35.97 REMARK 500 4 LEU A 61 -35.40 -37.36 REMARK 500 5 ARG A 10 49.03 -105.24 REMARK 500 5 VAL A 53 174.59 -59.44 REMARK 500 5 HIS A 59 -19.17 -49.03 REMARK 500 5 LEU A 61 -39.78 -35.84 REMARK 500 5 GLU A 68 -37.92 -34.22 REMARK 500 5 SER A 97 155.62 -38.87 REMARK 500 6 SER A 3 160.12 -49.29 REMARK 500 6 VAL A 53 174.51 -58.81 REMARK 500 6 PRO A 55 2.61 -69.74 REMARK 500 6 LEU A 61 -33.66 -39.66 REMARK 500 6 ASP A 91 175.75 -59.25 REMARK 500 6 SER A 101 112.13 -165.09 REMARK 500 7 SER A 3 -51.58 -130.44 REMARK 500 7 SER A 6 135.54 -35.05 REMARK 500 7 VAL A 53 174.10 -58.76 REMARK 500 7 ASP A 91 -178.91 -54.55 REMARK 500 7 SER A 95 174.00 -50.31 REMARK 500 7 ASN A 96 132.62 -35.19 REMARK 500 7 SER A 100 123.67 -175.01 REMARK 500 8 ASN A 9 109.30 -55.17 REMARK 500 8 PHE A 11 126.88 -36.80 REMARK 500 8 VAL A 53 174.13 -59.94 REMARK 500 9 VAL A 53 173.76 -59.73 REMARK 500 9 LEU A 61 -35.05 -34.60 REMARK 500 9 SER A 95 133.84 -34.66 REMARK 500 10 SER A 2 153.02 -40.81 REMARK 500 10 LYS A 33 -37.64 -36.50 REMARK 500 10 LEU A 61 -30.49 -36.27 REMARK 500 10 GLU A 68 -39.46 -36.41 REMARK 500 10 PRO A 99 85.15 -69.74 REMARK 500 10 SER A 100 88.22 -68.64 REMARK 500 11 ASN A 9 37.45 35.86 REMARK 500 11 PHE A 11 127.95 -173.01 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DA6 A 8 96 UNP P35680 HNF1B_HUMAN 233 321 SEQADV 2DA6 GLY A 1 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 2 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 3 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 4 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 5 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 6 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 7 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 97 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 98 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 PRO A 99 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 100 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 SER A 101 UNP P35680 CLONING ARTIFACT SEQADV 2DA6 GLY A 102 UNP P35680 CLONING ARTIFACT SEQRES 1 A 102 GLY SER SER GLY SER SER GLY ARG ASN ARG PHE LYS TRP SEQRES 2 A 102 GLY PRO ALA SER GLN GLN ILE LEU TYR GLN ALA TYR ASP SEQRES 3 A 102 ARG GLN LYS ASN PRO SER LYS GLU GLU ARG GLU ALA LEU SEQRES 4 A 102 VAL GLU GLU CYS ASN ARG ALA GLU CYS LEU GLN ARG GLY SEQRES 5 A 102 VAL SER PRO SER LYS ALA HIS GLY LEU GLY SER ASN LEU SEQRES 6 A 102 VAL THR GLU VAL ARG VAL TYR ASN TRP PHE ALA ASN ARG SEQRES 7 A 102 ARG LYS GLU GLU ALA PHE ARG GLN LYS LEU ALA MET ASP SEQRES 8 A 102 ALA TYR SER SER ASN SER GLY PRO SER SER GLY HELIX 1 1 GLY A 14 ASP A 26 1 13 HELIX 2 2 SER A 32 ARG A 51 1 20 HELIX 3 3 LYS A 57 LEU A 65 5 9 HELIX 4 4 THR A 67 ASP A 91 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1