HEADER APOPTOSIS 13-DEC-05 2DA9 TITLE SOLUTION STRUCTURE OF THE THIRD SH3 DOMAIN OF SH3-DOMAIN KINASE TITLE 2 BINDING PROTEIN 1 (REGULATOR OF UBIQUITOUS KINASE, RUK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3-DOMAIN KINASE BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE THIRD SH3 DOMAIN; COMPND 5 SYNONYM: REGULATOR OF UBIQUITOUS KINASE, RUK; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SH3KBP1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050425-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,T.KIGAWA,K.SAITO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DA9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DA9 1 VERSN REVDAT 1 13-JUN-06 2DA9 0 JRNL AUTH S.OHNISHI,T.KIGAWA,K.SAITO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD SH3 DOMAIN OF SH3-DOMAIN JRNL TITL 2 KINASE BINDING PROTEIN 1 (REGULATOR OF UBIQUITOUS KINASE, JRNL TITL 3 RUK) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DA9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025179. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM PROTEIN U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL (PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 40 -31.06 -32.73 REMARK 500 2 LEU A 34 106.80 -58.50 REMARK 500 2 ILE A 40 -30.36 -32.67 REMARK 500 3 LEU A 34 105.57 -58.32 REMARK 500 3 ILE A 40 -31.67 -32.05 REMARK 500 3 PRO A 67 -175.17 -69.75 REMARK 500 4 ALA A 18 106.35 -54.39 REMARK 500 4 ILE A 40 -30.41 -33.08 REMARK 500 5 ILE A 40 -31.49 -32.73 REMARK 500 6 ALA A 18 108.55 -52.24 REMARK 500 6 ILE A 40 -31.88 -32.38 REMARK 500 6 PRO A 67 0.90 -69.75 REMARK 500 7 LEU A 34 107.99 -58.45 REMARK 500 7 ILE A 40 -31.01 -32.46 REMARK 500 8 LEU A 34 109.42 -59.34 REMARK 500 8 ILE A 40 -30.51 -32.91 REMARK 500 9 ILE A 40 -29.62 -33.17 REMARK 500 10 ALA A 18 102.16 -56.40 REMARK 500 10 ILE A 40 -31.32 -32.59 REMARK 500 11 ALA A 18 102.99 -54.54 REMARK 500 11 LEU A 34 106.40 -59.22 REMARK 500 11 ILE A 40 -32.00 -32.30 REMARK 500 12 ILE A 40 -30.94 -32.55 REMARK 500 13 ALA A 18 104.90 -52.16 REMARK 500 13 GLU A 23 176.33 -52.83 REMARK 500 13 ILE A 40 -30.90 -32.56 REMARK 500 14 ILE A 40 -30.67 -32.97 REMARK 500 14 PRO A 67 96.34 -69.75 REMARK 500 15 ILE A 40 -32.40 -32.03 REMARK 500 16 LEU A 34 107.49 -58.49 REMARK 500 16 ILE A 40 -30.51 -32.52 REMARK 500 16 PRO A 67 1.92 -69.81 REMARK 500 17 LEU A 34 104.35 -57.61 REMARK 500 17 ILE A 40 -29.76 -33.28 REMARK 500 17 PRO A 67 94.70 -69.73 REMARK 500 18 ILE A 40 -28.80 -34.29 REMARK 500 18 PRO A 67 2.50 -69.76 REMARK 500 19 GLU A 28 109.83 -57.77 REMARK 500 19 ILE A 40 -30.08 -33.05 REMARK 500 20 ASP A 21 -37.53 -39.65 REMARK 500 20 ILE A 40 -33.39 -32.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000340.1 RELATED DB: TARGETDB DBREF 2DA9 A 8 64 UNP Q8R550 SH3K1_MOUSE 314 370 SEQADV 2DA9 GLY A 1 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 2 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 3 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 GLY A 4 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 5 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 6 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 GLY A 7 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 65 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 GLY A 66 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 PRO A 67 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 68 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 SER A 69 UNP Q8R550 CLONING ARTIFACT SEQADV 2DA9 GLY A 70 UNP Q8R550 CLONING ARTIFACT SEQRES 1 A 70 GLY SER SER GLY SER SER GLY ASP TYR CYS LYS VAL ILE SEQRES 2 A 70 PHE PRO TYR GLU ALA GLN ASN ASP ASP GLU LEU THR ILE SEQRES 3 A 70 LYS GLU GLY ASP ILE VAL THR LEU ILE ASN LYS ASP CYS SEQRES 4 A 70 ILE ASP VAL GLY TRP TRP GLU GLY GLU LEU ASN GLY ARG SEQRES 5 A 70 ARG GLY VAL PHE PRO ASP ASN PHE VAL LYS LEU LEU SER SEQRES 6 A 70 GLY PRO SER SER GLY SHEET 1 A 5 ARG A 53 PRO A 57 0 SHEET 2 A 5 TRP A 44 GLU A 48 -1 N TRP A 45 O PHE A 56 SHEET 3 A 5 ASP A 30 ASN A 36 -1 N THR A 33 O GLU A 48 SHEET 4 A 5 ASP A 8 VAL A 12 -1 N ASP A 8 O LEU A 34 SHEET 5 A 5 VAL A 61 LEU A 63 -1 O LYS A 62 N LYS A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1