data_2DAV # _entry.id 2DAV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DAV pdb_00002dav 10.2210/pdb2dav/pdb RCSB RCSB025196 ? ? WWPDB D_1000025196 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002000567.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DAV _pdbx_database_status.recvd_initial_deposition_date 2005-12-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Nagashima, T.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the first ig-like domain of Myosin-binding protein C, slow-type' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Nagashima, T.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Myosin-binding protein C, slow-type' _entity.formula_weight 14062.925 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'IG domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Slow MyBP-C; C-protein, skeletal muscle slow-isoform' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002000567.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 LEU n 1 10 PHE n 1 11 ILE n 1 12 GLU n 1 13 LYS n 1 14 PRO n 1 15 GLN n 1 16 GLY n 1 17 GLY n 1 18 THR n 1 19 VAL n 1 20 LYS n 1 21 VAL n 1 22 GLY n 1 23 GLU n 1 24 ASP n 1 25 ILE n 1 26 THR n 1 27 PHE n 1 28 ILE n 1 29 ALA n 1 30 LYS n 1 31 VAL n 1 32 LYS n 1 33 ALA n 1 34 GLU n 1 35 ASP n 1 36 LEU n 1 37 LEU n 1 38 ARG n 1 39 LYS n 1 40 PRO n 1 41 THR n 1 42 ILE n 1 43 LYS n 1 44 TRP n 1 45 PHE n 1 46 LYS n 1 47 GLY n 1 48 LYS n 1 49 TRP n 1 50 MET n 1 51 ASP n 1 52 LEU n 1 53 ALA n 1 54 SER n 1 55 LYS n 1 56 ALA n 1 57 GLY n 1 58 LYS n 1 59 HIS n 1 60 LEU n 1 61 GLN n 1 62 LEU n 1 63 LYS n 1 64 GLU n 1 65 THR n 1 66 PHE n 1 67 GLU n 1 68 ARG n 1 69 HIS n 1 70 SER n 1 71 ARG n 1 72 VAL n 1 73 TYR n 1 74 THR n 1 75 PHE n 1 76 GLU n 1 77 MET n 1 78 GLN n 1 79 ILE n 1 80 ILE n 1 81 LYS n 1 82 ALA n 1 83 LYS n 1 84 ASP n 1 85 ASN n 1 86 PHE n 1 87 ALA n 1 88 GLY n 1 89 ASN n 1 90 TYR n 1 91 ARG n 1 92 CYS n 1 93 GLU n 1 94 VAL n 1 95 THR n 1 96 TYR n 1 97 LYS n 1 98 ASP n 1 99 LYS n 1 100 PHE n 1 101 ASP n 1 102 SER n 1 103 CYS n 1 104 SER n 1 105 PHE n 1 106 ASP n 1 107 LEU n 1 108 GLU n 1 109 VAL n 1 110 HIS n 1 111 GLU n 1 112 SER n 1 113 THR n 1 114 GLY n 1 115 THR n 1 116 THR n 1 117 PRO n 1 118 ASN n 1 119 ILE n 1 120 ASP n 1 121 SER n 1 122 GLY n 1 123 PRO n 1 124 SER n 1 125 SER n 1 126 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'MYBPC1, MYBPCS' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050302-60 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYPC1_HUMAN _struct_ref.pdbx_db_accession Q00872 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 58 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DAV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00872 _struct_ref_seq.db_align_beg 58 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DAV GLY A 1 ? UNP Q00872 ? ? 'cloning artifact' 1 1 1 2DAV SER A 2 ? UNP Q00872 ? ? 'cloning artifact' 2 2 1 2DAV SER A 3 ? UNP Q00872 ? ? 'cloning artifact' 3 3 1 2DAV GLY A 4 ? UNP Q00872 ? ? 'cloning artifact' 4 4 1 2DAV SER A 5 ? UNP Q00872 ? ? 'cloning artifact' 5 5 1 2DAV SER A 6 ? UNP Q00872 ? ? 'cloning artifact' 6 6 1 2DAV GLY A 7 ? UNP Q00872 ? ? 'cloning artifact' 7 7 1 2DAV SER A 121 ? UNP Q00872 ? ? 'cloning artifact' 121 8 1 2DAV GLY A 122 ? UNP Q00872 ? ? 'cloning artifact' 122 9 1 2DAV PRO A 123 ? UNP Q00872 ? ? 'cloning artifact' 123 10 1 2DAV SER A 124 ? UNP Q00872 ? ? 'cloning artifact' 124 11 1 2DAV SER A 125 ? UNP Q00872 ? ? 'cloning artifact' 125 12 1 2DAV GLY A 126 ? UNP Q00872 ? ? 'cloning artifact' 126 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.32mM 13C,15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2DAV _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DAV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DAV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 Delaglio,F 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9296 'Kobayashi, N' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DAV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DAV _struct.title 'Solution structure of the first ig-like domain of Myosin-binding protein C, slow-type' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DAV _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN, CONTRACTILE PROTEIN' _struct_keywords.text ;IG domain, Myosin-binding protein C, slow-type, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN, CONTRACTILE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 51 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 56 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 51 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 56 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 18 ? LYS A 20 ? THR A 18 LYS A 20 A 2 ASP A 106 ? HIS A 110 ? ASP A 106 HIS A 110 A 3 GLY A 88 ? THR A 95 ? GLY A 88 THR A 95 A 4 THR A 41 ? LYS A 46 ? THR A 41 LYS A 46 B 1 THR A 18 ? LYS A 20 ? THR A 18 LYS A 20 B 2 ASP A 106 ? HIS A 110 ? ASP A 106 HIS A 110 B 3 GLY A 88 ? THR A 95 ? GLY A 88 THR A 95 B 4 PHE A 100 ? CYS A 103 ? PHE A 100 CYS A 103 C 1 ILE A 25 ? LYS A 32 ? ILE A 25 LYS A 32 C 2 VAL A 72 ? ILE A 79 ? VAL A 72 ILE A 79 C 3 LEU A 60 ? GLU A 67 ? LEU A 60 GLU A 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 19 ? N VAL A 19 O GLU A 108 ? O GLU A 108 A 2 3 O LEU A 107 ? O LEU A 107 N GLY A 88 ? N GLY A 88 A 3 4 O ARG A 91 ? O ARG A 91 N PHE A 45 ? N PHE A 45 B 1 2 N VAL A 19 ? N VAL A 19 O GLU A 108 ? O GLU A 108 B 2 3 O LEU A 107 ? O LEU A 107 N GLY A 88 ? N GLY A 88 B 3 4 N VAL A 94 ? N VAL A 94 O ASP A 101 ? O ASP A 101 C 1 2 N ALA A 29 ? N ALA A 29 O PHE A 75 ? O PHE A 75 C 2 3 O THR A 74 ? O THR A 74 N THR A 65 ? N THR A 65 # _database_PDB_matrix.entry_id 2DAV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DAV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 GLY 126 126 126 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -96.14 52.23 2 1 PHE A 10 ? ? -59.76 83.77 3 1 ILE A 11 ? ? -33.28 -75.84 4 1 PRO A 14 ? ? -69.74 94.72 5 1 LYS A 58 ? ? -129.33 -75.53 6 1 ASP A 98 ? ? -58.53 -74.16 7 1 THR A 116 ? ? -35.57 146.15 8 2 PHE A 10 ? ? -37.04 101.93 9 2 ILE A 11 ? ? -71.84 -75.28 10 2 PRO A 14 ? ? -69.75 85.06 11 2 GLN A 15 ? ? -56.33 107.44 12 2 ALA A 56 ? ? -55.79 109.57 13 2 LYS A 58 ? ? -121.16 -52.55 14 2 ASP A 98 ? ? -66.16 -70.64 15 2 ASN A 118 ? ? -49.16 161.31 16 3 ASP A 98 ? ? -63.48 -74.33 17 4 PHE A 10 ? ? -66.54 76.05 18 4 ILE A 11 ? ? -45.45 -76.07 19 4 PRO A 14 ? ? -69.71 82.71 20 4 GLU A 34 ? ? -132.23 -48.43 21 4 LYS A 58 ? ? -132.20 -63.08 22 4 LYS A 97 ? ? -27.82 -74.75 23 5 SER A 3 ? ? -66.51 81.60 24 5 ILE A 8 ? ? -166.50 118.74 25 5 PHE A 10 ? ? -54.26 84.71 26 5 GLU A 34 ? ? -133.81 -43.88 27 5 LYS A 58 ? ? -123.07 -63.68 28 5 ASP A 98 ? ? -64.69 -72.54 29 5 SER A 121 ? ? -46.67 166.13 30 6 ILE A 11 ? ? -41.84 -75.07 31 6 PRO A 14 ? ? -69.78 83.11 32 6 ASP A 98 ? ? -63.60 -73.43 33 7 PHE A 10 ? ? -62.19 76.13 34 7 LYS A 48 ? ? -102.91 -60.25 35 7 LYS A 58 ? ? -129.86 -58.24 36 7 ASP A 98 ? ? -65.02 -70.19 37 7 PRO A 123 ? ? -69.77 -179.72 38 8 SER A 5 ? ? -50.12 178.84 39 8 ILE A 11 ? ? -33.97 -75.06 40 8 GLN A 15 ? ? -82.12 39.25 41 8 ALA A 82 ? ? -54.09 105.67 42 8 LYS A 97 ? ? -33.30 -71.95 43 8 PRO A 117 ? ? -69.78 -176.63 44 8 SER A 125 ? ? 39.69 45.15 45 9 PRO A 14 ? ? -69.78 97.64 46 9 LYS A 58 ? ? -129.06 -72.07 47 9 ASP A 98 ? ? -72.07 -70.80 48 9 PRO A 123 ? ? -69.74 -177.09 49 10 LEU A 9 ? ? -112.88 75.68 50 10 ILE A 11 ? ? -61.72 -75.07 51 10 PRO A 14 ? ? -69.74 82.70 52 10 LYS A 58 ? ? -100.94 -72.29 53 10 ALA A 82 ? ? -51.12 106.69 54 10 LYS A 97 ? ? -32.83 -74.09 55 10 ASN A 118 ? ? -49.26 153.84 56 10 ASP A 120 ? ? -48.07 105.95 57 11 PHE A 10 ? ? -52.78 89.29 58 11 PRO A 14 ? ? -69.79 97.43 59 11 ALA A 56 ? ? -54.36 109.13 60 11 LYS A 58 ? ? -126.11 -58.40 61 11 ASP A 98 ? ? -63.84 -72.60 62 12 PHE A 10 ? ? -60.12 79.71 63 12 LYS A 58 ? ? -131.05 -50.32 64 12 ASP A 98 ? ? -62.87 -70.94 65 12 PRO A 117 ? ? -69.73 96.37 66 13 SER A 6 ? ? -173.63 149.69 67 13 ALA A 56 ? ? -54.38 107.80 68 13 LYS A 58 ? ? -126.16 -56.08 69 13 TYR A 96 ? ? -116.99 -73.67 70 13 LYS A 97 ? ? -120.27 -76.94 71 14 ILE A 8 ? ? -127.54 -52.58 72 14 ILE A 11 ? ? -41.28 -72.04 73 14 GLN A 15 ? ? -83.71 38.72 74 14 LYS A 97 ? ? -63.03 -71.20 75 14 ASP A 98 ? ? -40.13 -75.29 76 14 SER A 121 ? ? -37.60 146.68 77 15 PRO A 14 ? ? -69.79 85.97 78 15 ALA A 56 ? ? -59.30 109.72 79 15 LYS A 97 ? ? -30.60 -75.71 80 15 ASN A 118 ? ? -45.23 162.70 81 15 PRO A 123 ? ? -69.78 2.28 82 16 ILE A 8 ? ? -130.50 -52.10 83 16 PHE A 10 ? ? -41.86 91.06 84 16 GLN A 15 ? ? -90.57 30.31 85 16 LYS A 58 ? ? -120.26 -54.65 86 16 ALA A 82 ? ? -53.17 109.87 87 16 ASP A 98 ? ? -69.94 -70.75 88 16 SER A 121 ? ? -49.84 161.84 89 17 PHE A 10 ? ? 72.52 50.83 90 17 ALA A 56 ? ? -54.15 108.19 91 17 LYS A 58 ? ? -133.04 -60.98 92 17 ALA A 82 ? ? -51.57 101.98 93 17 TYR A 96 ? ? -78.55 -76.17 94 17 LYS A 97 ? ? -135.04 -76.07 95 17 ASP A 120 ? ? 33.73 50.46 96 18 SER A 2 ? ? -120.87 -61.36 97 18 PHE A 10 ? ? -51.76 106.64 98 18 ILE A 11 ? ? -57.06 -74.82 99 18 LYS A 58 ? ? -124.22 -60.28 100 18 ASP A 98 ? ? -66.55 -71.50 101 19 LEU A 9 ? ? -64.88 -175.44 102 19 PHE A 10 ? ? 36.01 53.87 103 19 GLN A 15 ? ? -80.68 43.94 104 19 LYS A 58 ? ? -125.92 -50.81 105 19 ASP A 98 ? ? -62.39 -72.72 106 20 SER A 2 ? ? -167.37 114.52 107 20 GLN A 15 ? ? -86.25 35.02 108 20 LYS A 58 ? ? -128.99 -56.63 109 20 ALA A 82 ? ? -52.30 108.98 110 20 LYS A 97 ? ? -28.87 -74.51 #