HEADER LIGASE 14-DEC-05 2DAY TITLE SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RING FINGER PROTEIN 25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 25; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RWD DOMAIN; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF25; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050509-01; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS LIGASE, METAL-BINDING, UB1 CONJUGATION, UB1 CONJUGATION PATHWAY, RWD KEYWDS 2 DOMAIN, ALPHA+BETA SANDWICH FOLD, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,T.KIGAWA,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DAY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DAY 1 VERSN REVDAT 1 14-JUN-06 2DAY 0 JRNL AUTH M.YONEYAMA,T.KIGAWA,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RING FINGER JRNL TITL 2 PROTEIN 25 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DAY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025199. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.72MM RWD DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 148.97 -171.89 REMARK 500 1 TRP A 11 115.21 -162.08 REMARK 500 1 TYR A 24 44.40 -96.81 REMARK 500 1 ASN A 34 29.19 42.39 REMARK 500 1 THR A 37 26.56 38.94 REMARK 500 1 ILE A 44 149.07 -170.87 REMARK 500 1 ALA A 49 32.92 -88.71 REMARK 500 1 ALA A 51 94.85 -68.28 REMARK 500 1 GLN A 54 176.38 -51.53 REMARK 500 1 VAL A 59 119.94 -175.40 REMARK 500 1 PRO A 68 -174.97 -69.76 REMARK 500 1 TYR A 71 140.65 -31.87 REMARK 500 1 PRO A 83 83.27 -69.76 REMARK 500 1 VAL A 101 -39.85 -37.34 REMARK 500 2 SER A 3 143.46 -35.88 REMARK 500 2 ASP A 10 172.29 -54.01 REMARK 500 2 TYR A 24 42.39 -90.94 REMARK 500 2 LYS A 32 102.44 -58.60 REMARK 500 2 THR A 37 33.37 -88.36 REMARK 500 2 ALA A 49 44.11 -85.86 REMARK 500 2 SER A 56 -48.71 -130.15 REMARK 500 2 PRO A 68 -175.06 -69.71 REMARK 500 2 TYR A 71 140.33 -30.33 REMARK 500 2 HIS A 73 -38.94 -32.41 REMARK 500 2 PRO A 83 82.72 -69.78 REMARK 500 2 ALA A 109 126.73 -39.36 REMARK 500 3 TRP A 11 122.84 -170.50 REMARK 500 3 TYR A 24 44.29 -91.23 REMARK 500 3 THR A 37 28.26 47.94 REMARK 500 3 PRO A 48 92.87 -69.79 REMARK 500 3 ALA A 49 44.16 -83.28 REMARK 500 3 GLU A 52 33.38 -93.59 REMARK 500 3 PRO A 68 -173.77 -69.77 REMARK 500 3 TYR A 71 141.26 -29.24 REMARK 500 3 HIS A 73 -39.12 -31.68 REMARK 500 3 PRO A 83 85.18 -69.79 REMARK 500 3 VAL A 97 -71.54 -66.16 REMARK 500 3 SER A 123 31.95 -87.72 REMARK 500 4 SER A 2 97.51 -50.59 REMARK 500 4 TYR A 24 45.52 -95.42 REMARK 500 4 GLU A 27 -31.97 -35.82 REMARK 500 4 LYS A 32 101.95 -40.55 REMARK 500 4 THR A 37 31.39 -92.95 REMARK 500 4 ALA A 49 43.17 -89.21 REMARK 500 4 ALA A 51 44.27 -87.30 REMARK 500 4 GLU A 52 43.06 35.04 REMARK 500 4 ASP A 53 49.64 34.97 REMARK 500 4 TYR A 71 141.22 -31.65 REMARK 500 4 PRO A 83 80.79 -69.73 REMARK 500 4 LEU A 95 -70.65 -76.56 REMARK 500 REMARK 500 THIS ENTRY HAS 253 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000178.1 RELATED DB: TARGETDB DBREF 2DAY A 8 122 UNP Q96BH1 RNF25_HUMAN 10 125 SEQADV 2DAY GLY A 1 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 2 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 3 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY GLY A 4 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 5 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 6 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY GLY A 7 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 123 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY GLY A 124 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY PRO A 125 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 126 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY SER A 127 UNP Q96BH1 CLONING ARTIFACT SEQADV 2DAY GLY A 128 UNP Q96BH1 CLONING ARTIFACT SEQRES 1 A 128 GLY SER SER GLY SER SER GLY GLU GLU ASP TRP VAL LEU SEQRES 2 A 128 PRO SER GLU VAL GLU VAL LEU GLU SER ILE TYR LEU ASP SEQRES 3 A 128 GLU LEU GLN VAL ILE LYS GLY ASN GLY ARG THR SER PRO SEQRES 4 A 128 TRP GLU ILE TYR ILE THR LEU HIS PRO ALA THR ALA GLU SEQRES 5 A 128 ASP GLN ASP SER GLN TYR VAL CYS PHE THR LEU VAL LEU SEQRES 6 A 128 GLN VAL PRO ALA GLU TYR PRO HIS GLU VAL PRO GLN ILE SEQRES 7 A 128 SER ILE ARG ASN PRO ARG GLY LEU SER ASP GLU GLN ILE SEQRES 8 A 128 HIS THR ILE LEU GLN VAL LEU GLY HIS VAL ALA LYS ALA SEQRES 9 A 128 GLY LEU GLY THR ALA MET LEU TYR GLU LEU ILE GLU LYS SEQRES 10 A 128 GLY LYS GLU ILE LEU SER GLY PRO SER SER GLY HELIX 1 1 TRP A 11 TYR A 24 1 14 HELIX 2 2 SER A 87 GLY A 105 1 19 HELIX 3 3 MET A 110 SER A 123 1 14 SHEET 1 A 4 LEU A 28 ILE A 31 0 SHEET 2 A 4 TRP A 40 LEU A 46 -1 O GLU A 41 N ILE A 31 SHEET 3 A 4 CYS A 60 VAL A 67 -1 O LEU A 65 N ILE A 42 SHEET 4 A 4 GLN A 77 ARG A 84 -1 O SER A 79 N VAL A 64 CISPEP 1 TYR A 71 PRO A 72 1 -0.01 CISPEP 2 TYR A 71 PRO A 72 2 -0.07 CISPEP 3 TYR A 71 PRO A 72 3 -0.04 CISPEP 4 TYR A 71 PRO A 72 4 0.02 CISPEP 5 TYR A 71 PRO A 72 5 -0.07 CISPEP 6 TYR A 71 PRO A 72 6 -0.08 CISPEP 7 TYR A 71 PRO A 72 7 -0.06 CISPEP 8 TYR A 71 PRO A 72 8 -0.11 CISPEP 9 TYR A 71 PRO A 72 9 -0.02 CISPEP 10 TYR A 71 PRO A 72 10 -0.11 CISPEP 11 TYR A 71 PRO A 72 11 -0.11 CISPEP 12 TYR A 71 PRO A 72 12 -0.04 CISPEP 13 TYR A 71 PRO A 72 13 -0.09 CISPEP 14 TYR A 71 PRO A 72 14 -0.04 CISPEP 15 TYR A 71 PRO A 72 15 -0.04 CISPEP 16 TYR A 71 PRO A 72 16 -0.04 CISPEP 17 TYR A 71 PRO A 72 17 0.00 CISPEP 18 TYR A 71 PRO A 72 18 -0.03 CISPEP 19 TYR A 71 PRO A 72 19 -0.04 CISPEP 20 TYR A 71 PRO A 72 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1