HEADER PROTEIN BINDING 14-DEC-05 2DB0 TITLE CRYSTAL STRUCTURE OF PH0542 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 253AA LONG HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN, PH0542; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PRARE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HEAT REPEATS, HELICAL STRUCTURE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.NISHINO,N.HANDA,S.KISHISHITA,K.MURAYAMA,M.SHIROUZU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-MAR-24 2DB0 1 REMARK REVDAT 3 13-JUL-11 2DB0 1 VERSN REVDAT 2 24-FEB-09 2DB0 1 VERSN REVDAT 1 14-JUN-06 2DB0 0 JRNL AUTH N.HANDA,A.NISHINO,S.KISHISHITA,K.MURAYAMA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF PH0542 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.049 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.897 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.638 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.196 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.014 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS STRUCTURE WAS REFINED ALSO BY CNS REMARK 3 1.1. REMARK 4 REMARK 4 2DB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.9797, 0.9670 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.39750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.38950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.39750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.38950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 HIS A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 PHE B 8 REMARK 465 GLY B 249 REMARK 465 HIS B 250 REMARK 465 SER B 251 REMARK 465 SER B 252 REMARK 465 SER B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CG GLU A 21 CD 0.093 REMARK 500 TYR A 29 CE2 TYR A 29 CD2 0.096 REMARK 500 LYS A 35 CB LYS A 35 CG 0.167 REMARK 500 GLU A 39 CD GLU A 39 OE1 0.093 REMARK 500 TRP A 46 CB TRP A 46 CG -0.168 REMARK 500 VAL A 49 CB VAL A 49 CG1 0.147 REMARK 500 LYS A 50 CB LYS A 50 CG 0.174 REMARK 500 ALA A 52 CA ALA A 52 CB 0.149 REMARK 500 SER A 54 CA SER A 54 CB 0.094 REMARK 500 ALA A 60 CA ALA A 60 CB 0.136 REMARK 500 GLU A 64 CD GLU A 64 OE1 0.092 REMARK 500 GLU A 64 CD GLU A 64 OE2 0.080 REMARK 500 LEU A 78 CG LEU A 78 CD2 -0.222 REMARK 500 ILE A 84 CB ILE A 84 CG2 0.194 REMARK 500 GLU A 89 CD GLU A 89 OE2 0.081 REMARK 500 LYS A 92 CD LYS A 92 CE 0.157 REMARK 500 LYS A 92 CE LYS A 92 NZ 0.174 REMARK 500 MET A 97 SD MET A 97 CE -0.377 REMARK 500 LYS A 106 CE LYS A 106 NZ -0.162 REMARK 500 ASP A 120 C ASP A 120 O 0.116 REMARK 500 LYS A 124 CE LYS A 124 NZ 0.229 REMARK 500 ALA A 130 C ALA A 130 O -0.142 REMARK 500 MET A 142 CB MET A 142 CG 0.201 REMARK 500 MET A 142 SD MET A 142 CE -0.343 REMARK 500 LYS A 156 CD LYS A 156 CE 0.155 REMARK 500 PHE A 167 CE2 PHE A 167 CD2 -0.151 REMARK 500 GLU A 169 C GLU A 169 O -0.131 REMARK 500 GLU A 173 CG GLU A 173 CD 0.093 REMARK 500 ALA B 27 CA ALA B 27 CB 0.140 REMARK 500 ILE B 38 CB ILE B 38 CG2 0.221 REMARK 500 VAL B 48 CB VAL B 48 CG1 0.179 REMARK 500 GLN B 96 C GLN B 96 O 0.120 REMARK 500 GLU B 100 CD GLU B 100 OE2 -0.092 REMARK 500 GLU B 103 CD GLU B 103 OE1 -0.096 REMARK 500 VAL B 111 CB VAL B 111 CG2 0.160 REMARK 500 TYR B 116 CZ TYR B 116 CE2 0.089 REMARK 500 GLU B 121 CD GLU B 121 OE1 0.101 REMARK 500 LYS B 122 CD LYS B 122 CE 0.190 REMARK 500 TYR B 129 CE2 TYR B 129 CD2 0.130 REMARK 500 GLU B 133 CD GLU B 133 OE1 0.071 REMARK 500 MET B 142 SD MET B 142 CE -0.565 REMARK 500 ARG B 147 CG ARG B 147 CD 0.152 REMARK 500 LYS B 161 CD LYS B 161 CE -0.152 REMARK 500 PRO B 181 CG PRO B 181 CD 0.199 REMARK 500 ASN B 188 CG ASN B 188 ND2 0.198 REMARK 500 ALA B 209 CA ALA B 209 CB -0.129 REMARK 500 VAL B 218 CB VAL B 218 CG1 0.159 REMARK 500 VAL B 233 CB VAL B 233 CG2 -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 LYS A 92 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 LYS A 99 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 194 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 246 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP B 42 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 42 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 117 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 194 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 216 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG B 222 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 222 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU B 226 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 THR B 229 OG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 LEU B 232 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -71.82 -52.79 REMARK 500 GLU A 31 -42.88 -17.25 REMARK 500 LYS A 101 55.02 -142.28 REMARK 500 ASN A 138 82.66 -154.65 REMARK 500 SER A 155 157.10 -41.53 REMARK 500 GLU A 225 -30.40 -39.30 REMARK 500 ASN B 16 -155.75 -101.57 REMARK 500 HIS B 19 44.17 -94.93 REMARK 500 ARG B 63 68.53 -152.10 REMARK 500 ASP B 65 -39.45 -24.98 REMARK 500 LYS B 101 64.34 -117.71 REMARK 500 VAL B 111 -72.85 -32.75 REMARK 500 ALA B 114 107.60 -50.52 REMARK 500 ASN B 138 79.31 -152.65 REMARK 500 LEU B 190 2.92 -67.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000542.1 RELATED DB: TARGETDB DBREF 2DB0 A 1 253 UNP O58277 O58277_PYRHO 1 253 DBREF 2DB0 B 1 253 UNP O58277 O58277_PYRHO 1 253 SEQRES 1 A 253 MET SER MET GLU GLU GLU GLU PHE ASP ILE ARG GLU ALA SEQRES 2 A 253 LEU ALA ASN GLY GLU HIS LEU GLU LYS ILE LEU ILE MET SEQRES 3 A 253 ALA LYS TYR ASP GLU SER VAL LEU LYS LYS LEU ILE GLU SEQRES 4 A 253 LEU LEU ASP ASP ASP LEU TRP THR VAL VAL LYS ASN ALA SEQRES 5 A 253 ILE SER ILE ILE MET VAL ILE ALA LYS THR ARG GLU ASP SEQRES 6 A 253 LEU TYR GLU PRO MET LEU LYS LYS LEU PHE SER LEU LEU SEQRES 7 A 253 LYS LYS SER GLU ALA ILE PRO LEU THR GLN GLU ILE ALA SEQRES 8 A 253 LYS ALA PHE GLY GLN MET ALA LYS GLU LYS PRO GLU LEU SEQRES 9 A 253 VAL LYS SER MET ILE PRO VAL LEU PHE ALA ASN TYR ARG SEQRES 10 A 253 ILE GLY ASP GLU LYS THR LYS ILE ASN VAL SER TYR ALA SEQRES 11 A 253 LEU GLU GLU ILE ALA LYS ALA ASN PRO MET LEU MET ALA SEQRES 12 A 253 SER ILE VAL ARG ASP PHE MET SER MET LEU SER SER LYS SEQRES 13 A 253 ASN ARG GLU ASP LYS LEU THR ALA LEU ASN PHE ILE GLU SEQRES 14 A 253 ALA MET GLY GLU ASN SER PHE LYS TYR VAL ASN PRO PHE SEQRES 15 A 253 LEU PRO ARG ILE ILE ASN LEU LEU HIS ASP GLY ASP GLU SEQRES 16 A 253 ILE VAL ARG ALA SER ALA VAL GLU ALA LEU VAL HIS LEU SEQRES 17 A 253 ALA THR LEU ASN ASP LYS LEU ARG LYS VAL VAL ILE LYS SEQRES 18 A 253 ARG LEU GLU GLU LEU ASN ASP THR SER SER LEU VAL ASN SEQRES 19 A 253 LYS THR VAL LYS GLU GLY ILE SER ARG LEU LEU LEU LEU SEQRES 20 A 253 GLU GLY HIS SER SER SER SEQRES 1 B 253 MET SER MET GLU GLU GLU GLU PHE ASP ILE ARG GLU ALA SEQRES 2 B 253 LEU ALA ASN GLY GLU HIS LEU GLU LYS ILE LEU ILE MET SEQRES 3 B 253 ALA LYS TYR ASP GLU SER VAL LEU LYS LYS LEU ILE GLU SEQRES 4 B 253 LEU LEU ASP ASP ASP LEU TRP THR VAL VAL LYS ASN ALA SEQRES 5 B 253 ILE SER ILE ILE MET VAL ILE ALA LYS THR ARG GLU ASP SEQRES 6 B 253 LEU TYR GLU PRO MET LEU LYS LYS LEU PHE SER LEU LEU SEQRES 7 B 253 LYS LYS SER GLU ALA ILE PRO LEU THR GLN GLU ILE ALA SEQRES 8 B 253 LYS ALA PHE GLY GLN MET ALA LYS GLU LYS PRO GLU LEU SEQRES 9 B 253 VAL LYS SER MET ILE PRO VAL LEU PHE ALA ASN TYR ARG SEQRES 10 B 253 ILE GLY ASP GLU LYS THR LYS ILE ASN VAL SER TYR ALA SEQRES 11 B 253 LEU GLU GLU ILE ALA LYS ALA ASN PRO MET LEU MET ALA SEQRES 12 B 253 SER ILE VAL ARG ASP PHE MET SER MET LEU SER SER LYS SEQRES 13 B 253 ASN ARG GLU ASP LYS LEU THR ALA LEU ASN PHE ILE GLU SEQRES 14 B 253 ALA MET GLY GLU ASN SER PHE LYS TYR VAL ASN PRO PHE SEQRES 15 B 253 LEU PRO ARG ILE ILE ASN LEU LEU HIS ASP GLY ASP GLU SEQRES 16 B 253 ILE VAL ARG ALA SER ALA VAL GLU ALA LEU VAL HIS LEU SEQRES 17 B 253 ALA THR LEU ASN ASP LYS LEU ARG LYS VAL VAL ILE LYS SEQRES 18 B 253 ARG LEU GLU GLU LEU ASN ASP THR SER SER LEU VAL ASN SEQRES 19 B 253 LYS THR VAL LYS GLU GLY ILE SER ARG LEU LEU LEU LEU SEQRES 20 B 253 GLU GLY HIS SER SER SER FORMUL 3 HOH *101(H2 O) HELIX 1 1 ASP A 9 ASN A 16 1 8 HELIX 2 2 HIS A 19 ASP A 30 1 12 HELIX 3 3 ASP A 30 LEU A 41 1 12 HELIX 4 4 LEU A 45 LYS A 61 1 17 HELIX 5 5 THR A 62 ASP A 65 5 4 HELIX 6 6 LEU A 66 SER A 81 1 16 HELIX 7 7 ALA A 83 LYS A 101 1 19 HELIX 8 8 LYS A 101 TYR A 116 1 16 HELIX 9 9 ASP A 120 ASN A 138 1 19 HELIX 10 10 ASN A 138 LEU A 153 1 16 HELIX 11 11 ASN A 157 ALA A 170 1 14 HELIX 12 12 SER A 175 ASN A 180 1 6 HELIX 13 13 PHE A 182 ASN A 188 1 7 HELIX 14 14 LEU A 189 ASP A 192 5 4 HELIX 15 15 ASP A 194 THR A 210 1 17 HELIX 16 16 ASN A 212 LEU A 226 1 15 HELIX 17 17 SER A 230 LEU A 247 1 18 HELIX 18 18 ASP B 9 ASN B 16 1 8 HELIX 19 19 HIS B 19 ASP B 30 1 12 HELIX 20 20 ASP B 30 LEU B 41 1 12 HELIX 21 21 LEU B 45 ALA B 60 1 16 HELIX 22 22 LYS B 61 ASP B 65 5 5 HELIX 23 23 LEU B 66 SER B 81 1 16 HELIX 24 24 ALA B 83 LYS B 101 1 19 HELIX 25 25 LYS B 101 PHE B 113 1 13 HELIX 26 26 ASP B 120 ASN B 138 1 19 HELIX 27 27 ASN B 138 SER B 151 1 14 HELIX 28 28 MET B 152 SER B 155 5 4 HELIX 29 29 ASN B 157 GLU B 169 1 13 HELIX 30 30 SER B 175 ASN B 180 1 6 HELIX 31 31 PHE B 182 ASN B 188 1 7 HELIX 32 32 LEU B 189 ASP B 192 5 4 HELIX 33 33 ASP B 194 ASN B 212 1 19 HELIX 34 34 ASN B 212 GLU B 225 1 14 HELIX 35 35 SER B 230 LEU B 246 1 17 CRYST1 78.795 90.779 66.451 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015049 0.00000