data_2DB1 # _entry.id 2DB1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DB1 pdb_00002db1 10.2210/pdb2db1/pdb RCSB RCSB025202 ? ? WWPDB D_1000025202 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008001147.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DB1 _pdbx_database_status.recvd_initial_deposition_date 2005-12-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title ;Solution structure of the RNA binding domain in heterogeneous nuclear ribonucleoprotein F homolog ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'heterogeneous nuclear ribonucleoprotein F' _entity.formula_weight 12851.251 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008001147.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 MET n 1 10 LEU n 1 11 GLY n 1 12 PRO n 1 13 GLU n 1 14 GLY n 1 15 GLY n 1 16 GLU n 1 17 GLY n 1 18 TYR n 1 19 VAL n 1 20 VAL n 1 21 LYS n 1 22 LEU n 1 23 ARG n 1 24 GLY n 1 25 LEU n 1 26 PRO n 1 27 TRP n 1 28 SER n 1 29 CYS n 1 30 SER n 1 31 ILE n 1 32 GLU n 1 33 ASP n 1 34 VAL n 1 35 GLN n 1 36 ASN n 1 37 PHE n 1 38 LEU n 1 39 SER n 1 40 ASP n 1 41 CYS n 1 42 THR n 1 43 ILE n 1 44 HIS n 1 45 ASP n 1 46 GLY n 1 47 VAL n 1 48 ALA n 1 49 GLY n 1 50 VAL n 1 51 HIS n 1 52 PHE n 1 53 ILE n 1 54 TYR n 1 55 THR n 1 56 ARG n 1 57 GLU n 1 58 GLY n 1 59 ARG n 1 60 GLN n 1 61 SER n 1 62 GLY n 1 63 GLU n 1 64 ALA n 1 65 PHE n 1 66 VAL n 1 67 GLU n 1 68 LEU n 1 69 GLU n 1 70 SER n 1 71 GLU n 1 72 ASP n 1 73 ASP n 1 74 VAL n 1 75 LYS n 1 76 LEU n 1 77 ALA n 1 78 LEU n 1 79 LYS n 1 80 LYS n 1 81 ASP n 1 82 ARG n 1 83 GLU n 1 84 SER n 1 85 MET n 1 86 GLY n 1 87 HIS n 1 88 ARG n 1 89 TYR n 1 90 ILE n 1 91 GLU n 1 92 VAL n 1 93 PHE n 1 94 LYS n 1 95 SER n 1 96 HIS n 1 97 ARG n 1 98 THR n 1 99 GLU n 1 100 MET n 1 101 ASP n 1 102 TRP n 1 103 VAL n 1 104 LEU n 1 105 LYS n 1 106 HIS n 1 107 SER n 1 108 GLY n 1 109 PRO n 1 110 ASN n 1 111 SER n 1 112 ALA n 1 113 SER n 1 114 GLY n 1 115 PRO n 1 116 SER n 1 117 SER n 1 118 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'hnRNP F' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050425-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9Z2X1_MOUSE _struct_ref.pdbx_db_accession Q9Z2X1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DB1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Z2X1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 105 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DB1 GLY A 1 ? UNP Q9Z2X1 ? ? 'cloning artifact' -6 1 1 2DB1 SER A 2 ? UNP Q9Z2X1 ? ? 'cloning artifact' -5 2 1 2DB1 SER A 3 ? UNP Q9Z2X1 ? ? 'cloning artifact' -4 3 1 2DB1 GLY A 4 ? UNP Q9Z2X1 ? ? 'cloning artifact' -3 4 1 2DB1 SER A 5 ? UNP Q9Z2X1 ? ? 'cloning artifact' -2 5 1 2DB1 SER A 6 ? UNP Q9Z2X1 ? ? 'cloning artifact' -1 6 1 2DB1 GLY A 7 ? UNP Q9Z2X1 ? ? 'cloning artifact' 0 7 1 2DB1 SER A 113 ? UNP Q9Z2X1 ? ? 'cloning artifact' 106 8 1 2DB1 GLY A 114 ? UNP Q9Z2X1 ? ? 'cloning artifact' 107 9 1 2DB1 PRO A 115 ? UNP Q9Z2X1 ? ? 'cloning artifact' 108 10 1 2DB1 SER A 116 ? UNP Q9Z2X1 ? ? 'cloning artifact' 109 11 1 2DB1 SER A 117 ? UNP Q9Z2X1 ? ? 'cloning artifact' 110 12 1 2DB1 GLY A 118 ? UNP Q9Z2X1 ? ? 'cloning artifact' 111 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DB1 _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DB1 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DB1 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.93191 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2DB1 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DB1 _struct.title 'Solution structure of the RNA binding domain in heterogeneous nuclear ribonucleoprotein F homolog' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DB1 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 30 ? LEU A 38 ? SER A 23 LEU A 31 1 ? 9 HELX_P HELX_P2 2 ASP A 45 ? ALA A 48 ? ASP A 38 ALA A 41 5 ? 4 HELX_P HELX_P3 3 SER A 70 ? LEU A 78 ? SER A 63 LEU A 71 1 ? 9 HELX_P HELX_P4 4 LYS A 79 ? ASP A 81 ? LYS A 72 ASP A 74 5 ? 3 HELX_P HELX_P5 5 HIS A 96 ? HIS A 106 ? HIS A 89 HIS A 99 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 50 ? TYR A 54 ? VAL A 43 TYR A 47 A 2 GLN A 60 ? GLU A 67 ? GLN A 53 GLU A 60 A 3 VAL A 19 ? ARG A 23 ? VAL A 12 ARG A 16 A 4 ARG A 88 ? SER A 95 ? ARG A 81 SER A 88 A 5 GLU A 83 ? MET A 85 ? GLU A 76 MET A 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 53 ? N ILE A 46 O GLU A 63 ? O GLU A 56 A 2 3 O ALA A 64 ? O ALA A 57 N LEU A 22 ? N LEU A 15 A 3 4 N LYS A 21 ? N LYS A 14 O PHE A 93 ? O PHE A 86 A 4 5 O ILE A 90 ? O ILE A 83 N GLU A 83 ? N GLU A 76 # _database_PDB_matrix.entry_id 2DB1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DB1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 -6 GLY GLY A . n A 1 2 SER 2 -5 -5 SER SER A . n A 1 3 SER 3 -4 -4 SER SER A . n A 1 4 GLY 4 -3 -3 GLY GLY A . n A 1 5 SER 5 -2 -2 SER SER A . n A 1 6 SER 6 -1 -1 SER SER A . n A 1 7 GLY 7 0 0 GLY GLY A . n A 1 8 MET 8 1 1 MET MET A . n A 1 9 MET 9 2 2 MET MET A . n A 1 10 LEU 10 3 3 LEU LEU A . n A 1 11 GLY 11 4 4 GLY GLY A . n A 1 12 PRO 12 5 5 PRO PRO A . n A 1 13 GLU 13 6 6 GLU GLU A . n A 1 14 GLY 14 7 7 GLY GLY A . n A 1 15 GLY 15 8 8 GLY GLY A . n A 1 16 GLU 16 9 9 GLU GLU A . n A 1 17 GLY 17 10 10 GLY GLY A . n A 1 18 TYR 18 11 11 TYR TYR A . n A 1 19 VAL 19 12 12 VAL VAL A . n A 1 20 VAL 20 13 13 VAL VAL A . n A 1 21 LYS 21 14 14 LYS LYS A . n A 1 22 LEU 22 15 15 LEU LEU A . n A 1 23 ARG 23 16 16 ARG ARG A . n A 1 24 GLY 24 17 17 GLY GLY A . n A 1 25 LEU 25 18 18 LEU LEU A . n A 1 26 PRO 26 19 19 PRO PRO A . n A 1 27 TRP 27 20 20 TRP TRP A . n A 1 28 SER 28 21 21 SER SER A . n A 1 29 CYS 29 22 22 CYS CYS A . n A 1 30 SER 30 23 23 SER SER A . n A 1 31 ILE 31 24 24 ILE ILE A . n A 1 32 GLU 32 25 25 GLU GLU A . n A 1 33 ASP 33 26 26 ASP ASP A . n A 1 34 VAL 34 27 27 VAL VAL A . n A 1 35 GLN 35 28 28 GLN GLN A . n A 1 36 ASN 36 29 29 ASN ASN A . n A 1 37 PHE 37 30 30 PHE PHE A . n A 1 38 LEU 38 31 31 LEU LEU A . n A 1 39 SER 39 32 32 SER SER A . n A 1 40 ASP 40 33 33 ASP ASP A . n A 1 41 CYS 41 34 34 CYS CYS A . n A 1 42 THR 42 35 35 THR THR A . n A 1 43 ILE 43 36 36 ILE ILE A . n A 1 44 HIS 44 37 37 HIS HIS A . n A 1 45 ASP 45 38 38 ASP ASP A . n A 1 46 GLY 46 39 39 GLY GLY A . n A 1 47 VAL 47 40 40 VAL VAL A . n A 1 48 ALA 48 41 41 ALA ALA A . n A 1 49 GLY 49 42 42 GLY GLY A . n A 1 50 VAL 50 43 43 VAL VAL A . n A 1 51 HIS 51 44 44 HIS HIS A . n A 1 52 PHE 52 45 45 PHE PHE A . n A 1 53 ILE 53 46 46 ILE ILE A . n A 1 54 TYR 54 47 47 TYR TYR A . n A 1 55 THR 55 48 48 THR THR A . n A 1 56 ARG 56 49 49 ARG ARG A . n A 1 57 GLU 57 50 50 GLU GLU A . n A 1 58 GLY 58 51 51 GLY GLY A . n A 1 59 ARG 59 52 52 ARG ARG A . n A 1 60 GLN 60 53 53 GLN GLN A . n A 1 61 SER 61 54 54 SER SER A . n A 1 62 GLY 62 55 55 GLY GLY A . n A 1 63 GLU 63 56 56 GLU GLU A . n A 1 64 ALA 64 57 57 ALA ALA A . n A 1 65 PHE 65 58 58 PHE PHE A . n A 1 66 VAL 66 59 59 VAL VAL A . n A 1 67 GLU 67 60 60 GLU GLU A . n A 1 68 LEU 68 61 61 LEU LEU A . n A 1 69 GLU 69 62 62 GLU GLU A . n A 1 70 SER 70 63 63 SER SER A . n A 1 71 GLU 71 64 64 GLU GLU A . n A 1 72 ASP 72 65 65 ASP ASP A . n A 1 73 ASP 73 66 66 ASP ASP A . n A 1 74 VAL 74 67 67 VAL VAL A . n A 1 75 LYS 75 68 68 LYS LYS A . n A 1 76 LEU 76 69 69 LEU LEU A . n A 1 77 ALA 77 70 70 ALA ALA A . n A 1 78 LEU 78 71 71 LEU LEU A . n A 1 79 LYS 79 72 72 LYS LYS A . n A 1 80 LYS 80 73 73 LYS LYS A . n A 1 81 ASP 81 74 74 ASP ASP A . n A 1 82 ARG 82 75 75 ARG ARG A . n A 1 83 GLU 83 76 76 GLU GLU A . n A 1 84 SER 84 77 77 SER SER A . n A 1 85 MET 85 78 78 MET MET A . n A 1 86 GLY 86 79 79 GLY GLY A . n A 1 87 HIS 87 80 80 HIS HIS A . n A 1 88 ARG 88 81 81 ARG ARG A . n A 1 89 TYR 89 82 82 TYR TYR A . n A 1 90 ILE 90 83 83 ILE ILE A . n A 1 91 GLU 91 84 84 GLU GLU A . n A 1 92 VAL 92 85 85 VAL VAL A . n A 1 93 PHE 93 86 86 PHE PHE A . n A 1 94 LYS 94 87 87 LYS LYS A . n A 1 95 SER 95 88 88 SER SER A . n A 1 96 HIS 96 89 89 HIS HIS A . n A 1 97 ARG 97 90 90 ARG ARG A . n A 1 98 THR 98 91 91 THR THR A . n A 1 99 GLU 99 92 92 GLU GLU A . n A 1 100 MET 100 93 93 MET MET A . n A 1 101 ASP 101 94 94 ASP ASP A . n A 1 102 TRP 102 95 95 TRP TRP A . n A 1 103 VAL 103 96 96 VAL VAL A . n A 1 104 LEU 104 97 97 LEU LEU A . n A 1 105 LYS 105 98 98 LYS LYS A . n A 1 106 HIS 106 99 99 HIS HIS A . n A 1 107 SER 107 100 100 SER SER A . n A 1 108 GLY 108 101 101 GLY GLY A . n A 1 109 PRO 109 102 102 PRO PRO A . n A 1 110 ASN 110 103 103 ASN ASN A . n A 1 111 SER 111 104 104 SER SER A . n A 1 112 ALA 112 105 105 ALA ALA A . n A 1 113 SER 113 106 106 SER SER A . n A 1 114 GLY 114 107 107 GLY GLY A . n A 1 115 PRO 115 108 108 PRO PRO A . n A 1 116 SER 116 109 109 SER SER A . n A 1 117 SER 117 110 110 SER SER A . n A 1 118 GLY 118 111 111 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 6 ? ? -34.54 112.48 2 1 LEU A 31 ? ? -95.66 39.83 3 1 ASP A 33 ? ? -49.19 -19.03 4 1 ALA A 57 ? ? -160.13 118.53 5 1 ARG A 75 ? ? 31.49 38.87 6 1 THR A 91 ? ? -39.58 -26.90 7 1 SER A 100 ? ? -134.66 -57.12 8 1 SER A 110 ? ? -44.74 150.23 9 2 SER A -4 ? ? -83.92 46.85 10 2 MET A 2 ? ? 72.63 41.09 11 2 GLU A 6 ? ? -65.94 76.90 12 2 THR A 35 ? ? -110.54 73.18 13 2 LYS A 98 ? ? -39.38 -30.14 14 2 SER A 100 ? ? -123.32 -53.84 15 2 PRO A 102 ? ? -69.77 2.73 16 2 SER A 106 ? ? -69.82 88.31 17 3 MET A 2 ? ? -89.82 41.52 18 3 GLU A 6 ? ? -54.50 98.59 19 3 LEU A 31 ? ? -97.20 39.34 20 3 ASP A 33 ? ? -49.31 -19.93 21 3 ASP A 65 ? ? -38.01 -37.81 22 3 SER A 100 ? ? -131.76 -57.56 23 3 PRO A 102 ? ? -69.75 0.30 24 3 ALA A 105 ? ? -98.59 -63.59 25 3 SER A 109 ? ? -48.69 98.87 26 4 MET A 1 ? ? -59.82 88.63 27 4 MET A 2 ? ? -99.72 -69.94 28 4 LEU A 3 ? ? -99.57 31.86 29 4 PRO A 5 ? ? -69.74 -163.67 30 4 GLU A 9 ? ? -47.60 172.78 31 4 LEU A 31 ? ? -105.79 41.73 32 4 THR A 35 ? ? -106.90 72.34 33 4 GLN A 53 ? ? -66.07 95.50 34 4 ARG A 75 ? ? 33.33 34.50 35 5 LEU A 3 ? ? -50.36 109.48 36 5 PRO A 5 ? ? -69.75 -178.17 37 5 LEU A 31 ? ? -94.91 38.33 38 5 GLN A 53 ? ? -62.32 97.83 39 5 ARG A 75 ? ? 31.15 44.88 40 5 PRO A 102 ? ? -69.76 2.83 41 5 SER A 106 ? ? -82.89 47.08 42 5 PRO A 108 ? ? -69.79 85.17 43 6 PRO A 5 ? ? -69.76 98.12 44 6 LEU A 31 ? ? -91.64 37.50 45 6 SER A 100 ? ? -127.27 -58.94 46 6 PRO A 108 ? ? -69.80 89.00 47 6 SER A 110 ? ? -48.06 159.53 48 7 SER A -4 ? ? -91.11 42.76 49 7 SER A -1 ? ? -67.63 93.94 50 7 PRO A 5 ? ? -69.75 -174.46 51 7 LEU A 31 ? ? -89.13 39.00 52 7 GLN A 53 ? ? -67.40 89.27 53 7 ARG A 75 ? ? 33.27 36.70 54 7 THR A 91 ? ? -33.17 -34.58 55 7 SER A 100 ? ? -128.44 -59.83 56 7 PRO A 108 ? ? -69.78 0.79 57 8 LEU A 3 ? ? -51.53 97.88 58 8 THR A 35 ? ? -102.19 74.21 59 8 THR A 91 ? ? -38.80 -29.92 60 8 MET A 93 ? ? -49.42 -19.60 61 9 PRO A 5 ? ? -69.72 -175.70 62 9 TYR A 11 ? ? -54.06 108.94 63 9 LEU A 31 ? ? -93.72 38.61 64 9 THR A 35 ? ? -108.21 76.98 65 9 ALA A 57 ? ? -162.05 117.40 66 9 SER A 100 ? ? -133.91 -62.29 67 10 PRO A 5 ? ? -69.82 2.39 68 10 GLU A 6 ? ? -84.44 38.80 69 10 LEU A 31 ? ? -90.27 39.19 70 10 GLN A 53 ? ? -65.04 80.77 71 10 PRO A 102 ? ? -69.77 2.91 72 11 SER A -2 ? ? -39.01 146.75 73 11 MET A 1 ? ? -101.59 42.82 74 11 GLU A 9 ? ? -39.81 159.25 75 11 TYR A 11 ? ? -56.25 106.66 76 11 LEU A 31 ? ? -93.93 40.08 77 11 GLN A 53 ? ? -111.87 78.63 78 11 ARG A 75 ? ? 49.08 29.87 79 11 PRO A 108 ? ? -69.76 0.01 80 12 MET A 1 ? ? -91.01 -63.82 81 12 MET A 2 ? ? -105.10 -62.87 82 12 LEU A 3 ? ? -171.89 145.79 83 12 GLU A 9 ? ? -44.25 169.13 84 12 THR A 35 ? ? -107.58 76.49 85 12 ARG A 75 ? ? 32.46 37.46 86 13 MET A 1 ? ? 70.38 40.14 87 13 TYR A 11 ? ? -49.41 108.57 88 13 THR A 35 ? ? -105.67 72.69 89 13 ALA A 57 ? ? -165.43 118.27 90 13 ARG A 75 ? ? 36.06 30.22 91 13 SER A 100 ? ? -128.03 -55.38 92 14 SER A -2 ? ? -105.07 43.48 93 14 PRO A 5 ? ? -69.80 2.90 94 14 LEU A 31 ? ? -105.76 42.22 95 14 GLN A 53 ? ? -66.01 98.95 96 14 PRO A 108 ? ? -69.74 1.90 97 14 SER A 109 ? ? -42.03 163.39 98 15 LEU A 3 ? ? -34.23 130.82 99 15 PRO A 5 ? ? -69.80 -176.83 100 15 GLU A 9 ? ? -48.41 159.82 101 15 LEU A 31 ? ? -99.06 43.05 102 15 ARG A 75 ? ? 34.40 33.30 103 15 LYS A 98 ? ? -39.92 -30.84 104 15 SER A 100 ? ? -120.50 -50.19 105 15 SER A 104 ? ? -45.03 107.80 106 16 SER A -2 ? ? -99.39 42.09 107 16 PRO A 5 ? ? -69.74 1.25 108 16 GLU A 9 ? ? -42.10 150.35 109 16 TYR A 11 ? ? -58.66 103.19 110 16 LEU A 31 ? ? -88.33 39.77 111 16 ARG A 75 ? ? 43.23 29.62 112 16 LEU A 97 ? ? -91.59 -60.58 113 16 PRO A 102 ? ? -69.78 0.59 114 16 SER A 106 ? ? -107.21 43.48 115 16 PRO A 108 ? ? -69.82 2.06 116 16 SER A 109 ? ? -35.29 131.90 117 17 PRO A 5 ? ? -69.70 -175.86 118 17 GLU A 6 ? ? -42.51 99.61 119 17 LEU A 31 ? ? -89.74 41.55 120 17 ARG A 49 ? ? -49.08 -17.05 121 17 ARG A 75 ? ? 32.20 36.19 122 17 PRO A 102 ? ? -69.73 0.70 123 18 LEU A 3 ? ? 33.78 43.02 124 18 PRO A 5 ? ? -69.77 89.90 125 18 GLU A 6 ? ? 26.19 51.05 126 18 THR A 35 ? ? -104.54 77.89 127 18 SER A 110 ? ? -38.36 110.80 128 19 LEU A 3 ? ? -34.21 115.45 129 19 GLU A 9 ? ? -41.78 152.68 130 19 THR A 35 ? ? -112.55 75.74 131 19 ARG A 49 ? ? -47.77 -19.43 132 19 ARG A 75 ? ? 31.17 39.42 133 19 SER A 100 ? ? -127.46 -71.56 134 19 PRO A 102 ? ? -69.79 -90.76 135 20 SER A -2 ? ? -67.89 94.45 136 20 MET A 1 ? ? 34.56 40.26 137 20 PRO A 5 ? ? -69.78 1.16 138 20 LEU A 31 ? ? -103.97 41.51 139 20 THR A 35 ? ? -102.63 79.57 140 20 GLN A 53 ? ? -62.49 97.48 141 20 ALA A 57 ? ? -160.72 116.88 142 20 ARG A 75 ? ? 49.93 29.84 143 20 LYS A 98 ? ? -39.98 -32.95 144 20 SER A 100 ? ? -121.18 -52.42 145 20 ASN A 103 ? ? -127.15 -67.65 #