HEADER SIGNALING PROTEIN 15-DEC-05 2DBD TITLE SOLUTION STRUCTURE OF THE CARD DOMAIN IN HUMAN CASPASE RECRUITMENT TITLE 2 DOMAIN PROTEIN 4 (NOD1 PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE RECRUITMENT DOMAIN PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARD DOMAIN; COMPND 5 SYNONYM: CARD4, NOD1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC1621_H11; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050613-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS APOPTOSIS, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DBD 1 REMARK REVDAT 3 09-MAR-22 2DBD 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DBD 1 VERSN REVDAT 1 19-DEC-06 2DBD 0 JRNL AUTH K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CARD DOMAIN IN HUMAN CASPASE JRNL TITL 2 RECRUITMENT DOMAIN PROTEIN 4 (NOD1 PROTEIN) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.8, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DBD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025214. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-TRIS-HCL, REMARK 210 PH7.0, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002, NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 8 77.72 60.57 REMARK 500 1 ARG A 26 -46.46 -130.93 REMARK 500 1 ARG A 92 -61.42 -179.36 REMARK 500 1 PRO A 104 -174.26 -53.48 REMARK 500 2 SER A 5 174.05 58.77 REMARK 500 2 ASN A 17 45.31 -103.53 REMARK 500 2 LYS A 69 -75.18 -60.75 REMARK 500 2 TYR A 88 -177.82 -62.54 REMARK 500 2 VAL A 89 -46.86 -145.15 REMARK 500 2 ARG A 92 -60.90 179.90 REMARK 500 3 SER A 6 103.33 60.25 REMARK 500 3 HIS A 8 77.47 60.13 REMARK 500 3 ASN A 17 40.30 -105.40 REMARK 500 3 ASP A 39 61.01 64.19 REMARK 500 3 LEU A 91 31.31 -96.37 REMARK 500 4 ARG A 92 -60.19 179.26 REMARK 500 4 PHE A 100 99.72 -64.87 REMARK 500 4 SER A 101 -67.84 68.59 REMARK 500 4 SER A 106 116.54 -166.36 REMARK 500 5 SER A 2 -55.86 -172.11 REMARK 500 5 SER A 3 -47.77 -145.63 REMARK 500 5 SER A 5 -47.18 -141.76 REMARK 500 5 ARG A 26 -47.66 -143.17 REMARK 500 5 ASP A 90 -44.74 -131.85 REMARK 500 5 ARG A 92 -57.99 176.79 REMARK 500 6 SER A 3 167.28 60.55 REMARK 500 6 ASN A 17 37.28 -97.84 REMARK 500 6 ARG A 92 -61.36 -178.20 REMARK 500 6 SER A 102 32.17 -98.18 REMARK 500 7 ASN A 17 54.62 -114.28 REMARK 500 7 ASP A 90 -46.27 -135.15 REMARK 500 7 ARG A 92 -52.56 -179.49 REMARK 500 8 SER A 2 -56.82 -150.14 REMARK 500 8 ASN A 17 42.86 -100.14 REMARK 500 8 VAL A 89 -46.97 -132.18 REMARK 500 8 ARG A 92 -61.36 -179.20 REMARK 500 8 SER A 101 -62.09 -131.74 REMARK 500 9 SER A 2 36.02 -172.84 REMARK 500 9 SER A 5 61.53 -102.45 REMARK 500 9 ASP A 39 71.14 65.98 REMARK 500 9 TYR A 40 -48.20 -132.34 REMARK 500 9 ARG A 92 -58.81 179.22 REMARK 500 9 PHE A 100 34.61 -98.46 REMARK 500 10 SER A 3 176.79 60.31 REMARK 500 10 SER A 5 35.15 -158.61 REMARK 500 10 SER A 6 -56.76 -138.25 REMARK 500 10 ARG A 92 -52.10 -179.41 REMARK 500 10 SER A 106 37.13 -97.69 REMARK 500 11 SER A 3 -177.26 60.49 REMARK 500 11 SER A 6 88.15 -155.77 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DBD A 8 101 UNP Q9Y239 CARD4_HUMAN 17 110 SEQADV 2DBD GLY A 1 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 2 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 3 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD GLY A 4 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 5 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 6 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD GLY A 7 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 102 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD GLY A 103 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD PRO A 104 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 105 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD SER A 106 UNP Q9Y239 CLONING ARTIFACT SEQADV 2DBD GLY A 107 UNP Q9Y239 CLONING ARTIFACT SEQRES 1 A 107 GLY SER SER GLY SER SER GLY HIS PRO HIS ILE GLN LEU SEQRES 2 A 107 LEU LYS SER ASN ARG GLU LEU LEU VAL THR HIS ILE ARG SEQRES 3 A 107 ASN THR GLN CYS LEU VAL ASP ASN LEU LEU LYS ASN ASP SEQRES 4 A 107 TYR PHE SER ALA GLU ASP ALA GLU ILE VAL CYS ALA CYS SEQRES 5 A 107 PRO THR GLN PRO ASP LYS VAL ARG LYS ILE LEU ASP LEU SEQRES 6 A 107 VAL GLN SER LYS GLY GLU GLU VAL SER GLU PHE PHE LEU SEQRES 7 A 107 TYR LEU LEU GLN GLN LEU ALA ASP ALA TYR VAL ASP LEU SEQRES 8 A 107 ARG PRO TRP LEU LEU GLU ILE GLY PHE SER SER GLY PRO SEQRES 9 A 107 SER SER GLY HELIX 1 1 HIS A 10 ASN A 17 1 8 HELIX 2 2 ASN A 17 ILE A 25 1 9 HELIX 3 3 THR A 28 ASN A 38 1 11 HELIX 4 4 SER A 42 CYS A 52 1 11 HELIX 5 5 THR A 54 GLY A 70 1 17 HELIX 6 6 GLY A 70 ASP A 86 1 17 HELIX 7 7 ARG A 92 GLY A 99 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1