data_2DBJ # _entry.id 2DBJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DBJ pdb_00002dbj 10.2210/pdb2dbj/pdb RCSB RCSB025219 ? ? WWPDB D_1000025219 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DBJ _pdbx_database_status.recvd_initial_deposition_date 2005-12-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sato, M.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structures of the fn3 domain of human Proto-oncogene tyrosine-protein kinase MER precursor' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sato, M.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Proto-oncogene tyrosine-protein kinase MER precursor' _entity.formula_weight 13012.497 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.1.112 _entity.pdbx_mutation ? _entity.pdbx_fragment 'Fibronectin type III domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'C-mer, Receptor tyrosine kinase MerTK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSR ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSR ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TRP n 1 9 ILE n 1 10 LEU n 1 11 ALA n 1 12 SER n 1 13 THR n 1 14 THR n 1 15 GLU n 1 16 GLY n 1 17 ALA n 1 18 PRO n 1 19 SER n 1 20 VAL n 1 21 ALA n 1 22 PRO n 1 23 LEU n 1 24 ASN n 1 25 VAL n 1 26 THR n 1 27 VAL n 1 28 PHE n 1 29 LEU n 1 30 ASN n 1 31 GLU n 1 32 SER n 1 33 SER n 1 34 ASP n 1 35 ASN n 1 36 VAL n 1 37 ASP n 1 38 ILE n 1 39 ARG n 1 40 TRP n 1 41 MET n 1 42 LYS n 1 43 PRO n 1 44 PRO n 1 45 THR n 1 46 LYS n 1 47 GLN n 1 48 GLN n 1 49 ASP n 1 50 GLY n 1 51 GLU n 1 52 LEU n 1 53 VAL n 1 54 GLY n 1 55 TYR n 1 56 ARG n 1 57 ILE n 1 58 SER n 1 59 HIS n 1 60 VAL n 1 61 TRP n 1 62 GLN n 1 63 SER n 1 64 ALA n 1 65 GLY n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 GLU n 1 70 LEU n 1 71 LEU n 1 72 GLU n 1 73 GLU n 1 74 VAL n 1 75 GLY n 1 76 GLN n 1 77 ASN n 1 78 GLY n 1 79 SER n 1 80 ARG n 1 81 ALA n 1 82 ARG n 1 83 ILE n 1 84 SER n 1 85 VAL n 1 86 GLN n 1 87 VAL n 1 88 HIS n 1 89 ASN n 1 90 ALA n 1 91 THR n 1 92 CYS n 1 93 THR n 1 94 VAL n 1 95 ARG n 1 96 ILE n 1 97 ALA n 1 98 ALA n 1 99 VAL n 1 100 THR n 1 101 ARG n 1 102 GLY n 1 103 GLY n 1 104 VAL n 1 105 GLY n 1 106 PRO n 1 107 PHE n 1 108 SER n 1 109 ASP n 1 110 PRO n 1 111 VAL n 1 112 LYS n 1 113 ILE n 1 114 PHE n 1 115 ILE n 1 116 PRO n 1 117 ALA n 1 118 HIS n 1 119 SER n 1 120 GLY n 1 121 PRO n 1 122 SER n 1 123 SER n 1 124 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MERTK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050314-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MERTK_HUMAN _struct_ref.pdbx_db_accession Q12866 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQV HNATCTVRIAAVTRGGVGPFSDPVKIFIPAH ; _struct_ref.pdbx_align_begin 373 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DBJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q12866 _struct_ref_seq.db_align_beg 373 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 483 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DBJ GLY A 1 ? UNP Q12866 ? ? 'cloning artifact' 1 1 1 2DBJ SER A 2 ? UNP Q12866 ? ? 'cloning artifact' 2 2 1 2DBJ SER A 3 ? UNP Q12866 ? ? 'cloning artifact' 3 3 1 2DBJ GLY A 4 ? UNP Q12866 ? ? 'cloning artifact' 4 4 1 2DBJ SER A 5 ? UNP Q12866 ? ? 'cloning artifact' 5 5 1 2DBJ SER A 6 ? UNP Q12866 ? ? 'cloning artifact' 6 6 1 2DBJ GLY A 7 ? UNP Q12866 ? ? 'cloning artifact' 7 7 1 2DBJ SER A 119 ? UNP Q12866 ? ? 'cloning artifact' 119 8 1 2DBJ GLY A 120 ? UNP Q12866 ? ? 'cloning artifact' 120 9 1 2DBJ PRO A 121 ? UNP Q12866 ? ? 'cloning artifact' 121 10 1 2DBJ SER A 122 ? UNP Q12866 ? ? 'cloning artifact' 122 11 1 2DBJ SER A 123 ? UNP Q12866 ? ? 'cloning artifact' 123 12 1 2DBJ GLY A 124 ? UNP Q12866 ? ? 'cloning artifact' 124 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1mM fn3 domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DBJ _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DBJ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DBJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DBJ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DBJ _struct.title 'Solution structures of the fn3 domain of human Proto-oncogene tyrosine-protein kinase MER precursor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DBJ _struct_keywords.pdbx_keywords 'Transferase, SIGNALING PROTEIN' _struct_keywords.text ;EC 2.7.1.112, C-mer, Receptor tyrosine kinase MerTK, fn3 domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Transferase, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 23 ? LEU A 29 ? LEU A 23 LEU A 29 A 2 ASN A 35 ? MET A 41 ? ASN A 35 MET A 41 A 3 ALA A 81 ? SER A 84 ? ALA A 81 SER A 84 B 1 ILE A 66 ? GLY A 75 ? ILE A 66 GLY A 75 B 2 LEU A 52 ? SER A 63 ? LEU A 52 SER A 63 B 3 ILE A 96 ? THR A 100 ? ILE A 96 THR A 100 C 1 ILE A 66 ? GLY A 75 ? ILE A 66 GLY A 75 C 2 LEU A 52 ? SER A 63 ? LEU A 52 SER A 63 C 3 THR A 91 ? VAL A 94 ? THR A 91 VAL A 94 C 4 VAL A 111 ? PHE A 114 ? VAL A 111 PHE A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 23 ? N LEU A 23 O MET A 41 ? O MET A 41 A 2 3 N ILE A 38 ? N ILE A 38 O ALA A 81 ? O ALA A 81 B 1 2 O ILE A 66 ? O ILE A 66 N SER A 63 ? N SER A 63 B 2 3 N GLY A 54 ? N GLY A 54 O VAL A 99 ? O VAL A 99 C 1 2 O ILE A 66 ? O ILE A 66 N SER A 63 ? N SER A 63 C 2 3 N GLN A 62 ? N GLN A 62 O THR A 91 ? O THR A 91 C 3 4 N CYS A 92 ? N CYS A 92 O ILE A 113 ? O ILE A 113 # _database_PDB_matrix.entry_id 2DBJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DBJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 MET 41 41 41 MET MET A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLY 124 124 124 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? 37.33 49.77 2 1 ILE A 9 ? ? -48.06 91.12 3 1 PRO A 18 ? ? -69.76 90.35 4 1 SER A 19 ? ? -78.37 43.29 5 1 ASP A 34 ? ? -80.66 48.27 6 1 PRO A 44 ? ? -69.76 5.07 7 1 THR A 45 ? ? -55.19 82.58 8 1 GLN A 48 ? ? -34.79 -32.35 9 1 SER A 79 ? ? 45.90 28.50 10 1 VAL A 85 ? ? -34.20 106.78 11 1 PRO A 121 ? ? -69.79 -174.46 12 2 SER A 5 ? ? -160.26 115.92 13 2 THR A 14 ? ? 36.40 36.37 14 2 PRO A 18 ? ? -69.68 88.57 15 2 SER A 19 ? ? -80.23 42.73 16 2 PRO A 44 ? ? -69.70 4.85 17 2 THR A 45 ? ? -59.29 83.58 18 2 ALA A 64 ? ? -55.89 102.95 19 2 ASN A 77 ? ? -97.25 49.86 20 2 SER A 79 ? ? 36.35 30.63 21 2 ARG A 80 ? ? -173.36 135.45 22 2 VAL A 85 ? ? -35.57 105.33 23 2 ALA A 117 ? ? -41.89 164.70 24 3 SER A 2 ? ? -160.53 115.50 25 3 PRO A 18 ? ? -69.79 90.00 26 3 SER A 19 ? ? -78.94 44.00 27 3 PRO A 44 ? ? -69.81 3.85 28 3 THR A 45 ? ? -61.30 91.72 29 3 VAL A 85 ? ? -34.68 103.36 30 3 ALA A 117 ? ? -43.68 163.05 31 3 SER A 119 ? ? -48.57 166.39 32 4 PRO A 18 ? ? -69.72 89.68 33 4 SER A 19 ? ? -78.98 43.56 34 4 PRO A 44 ? ? -69.81 4.89 35 4 ALA A 64 ? ? -63.33 99.96 36 4 ASN A 77 ? ? -99.16 54.05 37 4 VAL A 85 ? ? -36.60 112.83 38 4 PRO A 121 ? ? -69.70 95.81 39 4 SER A 122 ? ? -57.44 92.68 40 5 PRO A 18 ? ? -69.75 89.81 41 5 SER A 19 ? ? -78.95 43.57 42 5 PRO A 44 ? ? -69.79 5.12 43 5 LYS A 46 ? ? -132.27 -57.42 44 5 VAL A 85 ? ? -36.68 98.70 45 5 ALA A 117 ? ? -40.32 154.97 46 5 SER A 123 ? ? -132.66 -33.21 47 6 SER A 3 ? ? -62.02 89.04 48 6 PRO A 18 ? ? -69.76 90.90 49 6 SER A 19 ? ? -78.92 43.60 50 6 ASP A 34 ? ? -94.59 52.39 51 6 PRO A 44 ? ? -69.79 6.17 52 6 THR A 45 ? ? -66.88 72.00 53 6 VAL A 85 ? ? -38.21 102.05 54 7 THR A 13 ? ? -34.19 126.78 55 7 PRO A 18 ? ? -69.79 89.27 56 7 SER A 19 ? ? -79.53 43.88 57 7 ASP A 34 ? ? -88.26 47.53 58 7 PRO A 44 ? ? -69.77 2.83 59 7 THR A 45 ? ? 30.66 50.68 60 7 GLN A 48 ? ? 34.81 43.72 61 7 ALA A 64 ? ? -59.45 99.80 62 7 VAL A 85 ? ? -36.41 106.21 63 7 ALA A 117 ? ? -48.51 -73.35 64 8 PRO A 18 ? ? -69.79 87.82 65 8 SER A 19 ? ? -80.55 42.26 66 8 PRO A 44 ? ? -69.80 4.38 67 8 THR A 45 ? ? -59.32 78.78 68 8 GLN A 48 ? ? 38.91 39.05 69 8 SER A 79 ? ? -84.45 34.47 70 8 VAL A 85 ? ? -39.11 103.64 71 8 ALA A 117 ? ? -44.06 155.91 72 8 PRO A 121 ? ? -69.80 -174.96 73 9 PRO A 18 ? ? -69.73 89.37 74 9 SER A 19 ? ? -79.40 43.57 75 9 PRO A 44 ? ? -69.77 4.68 76 9 THR A 45 ? ? -33.74 132.80 77 9 SER A 79 ? ? 38.86 28.80 78 9 ARG A 80 ? ? -174.77 132.05 79 9 VAL A 85 ? ? -33.98 102.21 80 9 ALA A 117 ? ? -42.66 157.85 81 10 THR A 13 ? ? -35.78 107.93 82 10 PRO A 18 ? ? -69.78 90.25 83 10 SER A 19 ? ? -79.06 43.47 84 10 ASN A 24 ? ? 43.69 29.83 85 10 ASP A 34 ? ? -66.90 76.30 86 10 PRO A 44 ? ? -69.76 4.90 87 10 THR A 45 ? ? -65.61 89.15 88 10 ALA A 64 ? ? -62.90 99.80 89 10 VAL A 85 ? ? -36.46 106.49 90 10 HIS A 118 ? ? 34.52 54.36 91 10 SER A 119 ? ? -49.70 107.45 92 11 PRO A 18 ? ? -69.77 89.18 93 11 SER A 19 ? ? -79.42 43.79 94 11 ASP A 34 ? ? -68.86 77.60 95 11 PRO A 44 ? ? -69.82 4.48 96 11 THR A 45 ? ? -35.21 136.50 97 11 SER A 79 ? ? 37.71 27.81 98 11 VAL A 85 ? ? -34.02 114.41 99 11 HIS A 118 ? ? 37.87 30.80 100 12 SER A 2 ? ? -170.15 109.50 101 12 ASP A 34 ? ? -69.98 72.32 102 12 PRO A 44 ? ? -69.79 4.64 103 12 THR A 45 ? ? -58.65 79.62 104 12 LYS A 46 ? ? -131.79 -36.45 105 12 GLN A 48 ? ? 38.87 46.92 106 12 ASP A 49 ? ? -125.90 -58.12 107 12 ASN A 77 ? ? -50.42 -72.01 108 12 VAL A 85 ? ? -40.41 102.11 109 12 SER A 108 ? ? -65.56 -175.89 110 12 ALA A 117 ? ? -42.51 -74.25 111 13 SER A 12 ? ? -160.84 118.33 112 13 PRO A 18 ? ? -69.77 89.11 113 13 SER A 19 ? ? -79.54 43.44 114 13 ASN A 24 ? ? 44.06 25.84 115 13 PRO A 44 ? ? -69.80 4.57 116 13 THR A 45 ? ? -60.32 76.19 117 13 GLN A 47 ? ? -132.39 -37.45 118 13 ASP A 49 ? ? -129.28 -52.75 119 13 ALA A 64 ? ? -57.16 99.84 120 13 VAL A 85 ? ? -32.73 105.41 121 13 SER A 119 ? ? 36.23 51.97 122 13 PRO A 121 ? ? -69.76 1.76 123 14 SER A 19 ? ? 36.17 30.09 124 14 ASN A 24 ? ? 36.40 40.00 125 14 PRO A 44 ? ? -69.67 4.66 126 14 THR A 45 ? ? -36.14 104.38 127 14 VAL A 85 ? ? -36.00 99.26 128 14 ALA A 117 ? ? -41.48 155.93 129 15 PRO A 18 ? ? -69.75 89.18 130 15 SER A 19 ? ? -79.69 43.49 131 15 ASN A 24 ? ? 39.52 42.85 132 15 ASP A 34 ? ? -58.29 79.23 133 15 PRO A 44 ? ? -69.75 5.97 134 15 GLN A 47 ? ? -85.36 -75.05 135 15 HIS A 118 ? ? -41.48 159.06 136 15 SER A 119 ? ? -170.98 139.97 137 16 LEU A 10 ? ? -53.14 173.93 138 16 THR A 13 ? ? -41.05 152.49 139 16 PRO A 18 ? ? -69.74 89.01 140 16 SER A 19 ? ? -80.09 43.64 141 16 ASN A 24 ? ? 33.49 48.02 142 16 PRO A 44 ? ? -69.75 3.65 143 16 THR A 45 ? ? 32.42 54.51 144 16 GLN A 47 ? ? -61.72 75.19 145 16 GLN A 48 ? ? 33.35 45.02 146 16 VAL A 85 ? ? -33.85 104.76 147 16 ALA A 117 ? ? -45.75 157.79 148 16 HIS A 118 ? ? -37.01 -38.47 149 16 SER A 123 ? ? 34.57 40.02 150 17 PRO A 18 ? ? -69.76 90.75 151 17 SER A 19 ? ? -78.97 43.22 152 17 ASP A 34 ? ? -83.49 48.77 153 17 PRO A 44 ? ? -69.79 5.17 154 17 THR A 45 ? ? -41.45 92.96 155 17 LYS A 46 ? ? -132.14 -43.52 156 17 ASP A 49 ? ? -124.08 -55.95 157 17 ASN A 77 ? ? -98.92 58.35 158 17 VAL A 85 ? ? -33.13 110.74 159 17 ALA A 117 ? ? -46.51 167.61 160 18 ALA A 11 ? ? -161.04 119.63 161 18 SER A 12 ? ? 35.08 45.22 162 18 THR A 13 ? ? -105.05 79.30 163 18 PRO A 18 ? ? -69.81 90.18 164 18 SER A 19 ? ? -81.18 40.03 165 18 ASP A 34 ? ? -67.07 75.87 166 18 PRO A 44 ? ? -69.82 5.02 167 18 GLN A 47 ? ? -130.02 -48.84 168 18 SER A 79 ? ? -37.50 -32.42 169 18 VAL A 85 ? ? -49.08 99.17 170 18 ALA A 117 ? ? -43.00 162.81 171 19 SER A 2 ? ? -173.23 146.40 172 19 SER A 6 ? ? -35.18 125.20 173 19 PRO A 18 ? ? -69.75 89.32 174 19 SER A 19 ? ? -79.55 42.85 175 19 ASP A 34 ? ? -67.98 75.61 176 19 PRO A 44 ? ? -69.66 4.75 177 19 THR A 45 ? ? -33.84 97.08 178 19 VAL A 85 ? ? -35.63 115.87 179 19 ALA A 117 ? ? -46.24 166.97 180 19 PRO A 121 ? ? -69.69 80.08 181 20 PRO A 18 ? ? -69.75 90.37 182 20 SER A 19 ? ? -78.80 44.07 183 20 ASN A 24 ? ? 32.47 47.98 184 20 PRO A 44 ? ? -69.75 4.70 185 20 SER A 79 ? ? -36.40 -38.77 186 20 VAL A 85 ? ? -35.95 109.91 #