data_2DCE # _entry.id 2DCE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DCE pdb_00002dce 10.2210/pdb2dce/pdb RCSB RCSB025248 ? ? WWPDB D_1000025248 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002101882.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DCE _pdbx_database_status.recvd_initial_deposition_date 2006-01-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Tochio, N.' 2 'Umehara, T.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Tanaka, A.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Structural and Functional Differences of SWIRM Domain Subtypes' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 369 _citation.page_first 222 _citation.page_last 238 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17428495 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.03.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Tochio, N.' 2 ? primary 'Umehara, T.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yabuki, T.' 6 ? primary 'Aoki, M.' 7 ? primary 'Seki, E.' 8 ? primary 'Matsuda, T.' 9 ? primary 'Watanabe, S.' 10 ? primary 'Tomo, Y.' 11 ? primary 'Nishimura, Y.' 12 ? primary 'Harada, T.' 13 ? primary 'Terada, T.' 14 ? primary 'Shirouzu, M.' 15 ? primary 'Hayashizaki, Y.' 16 ? primary 'Ohara, O.' 17 ? primary 'Tanaka, A.' 18 ? primary 'Kigawa, T.' 19 ? primary 'Yokoyama, S.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'KIAA1915 protein' _entity.formula_weight 12829.412 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SWIRM domain, residues 8-111' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGHEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKN CGDVNCIGRIHTYLELIGAINFGCEQAVYNR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGHEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKN CGDVNCIGRIHTYLELIGAINFGCEQAVYNR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002101882.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 HIS n 1 9 GLU n 1 10 GLU n 1 11 GLU n 1 12 GLU n 1 13 LEU n 1 14 LYS n 1 15 PRO n 1 16 PRO n 1 17 GLU n 1 18 GLN n 1 19 GLU n 1 20 ILE n 1 21 GLU n 1 22 ILE n 1 23 ASP n 1 24 ARG n 1 25 ASN n 1 26 ILE n 1 27 ILE n 1 28 GLN n 1 29 GLU n 1 30 GLU n 1 31 GLU n 1 32 LYS n 1 33 GLN n 1 34 ALA n 1 35 ILE n 1 36 PRO n 1 37 GLU n 1 38 PHE n 1 39 PHE n 1 40 GLU n 1 41 GLY n 1 42 ARG n 1 43 GLN n 1 44 ALA n 1 45 LYS n 1 46 THR n 1 47 PRO n 1 48 GLU n 1 49 ARG n 1 50 TYR n 1 51 LEU n 1 52 LYS n 1 53 ILE n 1 54 ARG n 1 55 ASN n 1 56 TYR n 1 57 ILE n 1 58 LEU n 1 59 ASP n 1 60 GLN n 1 61 TRP n 1 62 GLU n 1 63 ILE n 1 64 CYS n 1 65 LYS n 1 66 PRO n 1 67 LYS n 1 68 TYR n 1 69 LEU n 1 70 ASN n 1 71 LYS n 1 72 THR n 1 73 SER n 1 74 VAL n 1 75 ARG n 1 76 PRO n 1 77 GLY n 1 78 LEU n 1 79 LYS n 1 80 ASN n 1 81 CYS n 1 82 GLY n 1 83 ASP n 1 84 VAL n 1 85 ASN n 1 86 CYS n 1 87 ILE n 1 88 GLY n 1 89 ARG n 1 90 ILE n 1 91 HIS n 1 92 THR n 1 93 TYR n 1 94 LEU n 1 95 GLU n 1 96 LEU n 1 97 ILE n 1 98 GLY n 1 99 ALA n 1 100 ILE n 1 101 ASN n 1 102 PHE n 1 103 GLY n 1 104 CYS n 1 105 GLU n 1 106 GLN n 1 107 ALA n 1 108 VAL n 1 109 TYR n 1 110 ASN n 1 111 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA1915 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041018-14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYSM1_HUMAN _struct_ref.pdbx_db_accession Q5VVJ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCI GRIHTYLELIGAINFGCEQAVYNR ; _struct_ref.pdbx_align_begin 367 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DCE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VVJ2 _struct_ref_seq.db_align_beg 367 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 470 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DCE GLY A 1 ? UNP Q5VVJ2 ? ? 'cloning artifact' 1 1 1 2DCE SER A 2 ? UNP Q5VVJ2 ? ? 'cloning artifact' 2 2 1 2DCE SER A 3 ? UNP Q5VVJ2 ? ? 'cloning artifact' 3 3 1 2DCE GLY A 4 ? UNP Q5VVJ2 ? ? 'cloning artifact' 4 4 1 2DCE SER A 5 ? UNP Q5VVJ2 ? ? 'cloning artifact' 5 5 1 2DCE SER A 6 ? UNP Q5VVJ2 ? ? 'cloning artifact' 6 6 1 2DCE GLY A 7 ? UNP Q5VVJ2 ? ? 'cloning artifact' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 320mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.17mM SWIRM domain U-15N,13C; 20mM d-Tris HCl; 300mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DCE _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DCE _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DCE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9318 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DCE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DCE _struct.title 'Solution structure of the SWIRM domain of human KIAA1915 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DCE _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;SWIRM domain, KIAA1915, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 28 ? GLN A 33 ? GLN A 28 GLN A 33 1 ? 6 HELX_P HELX_P2 2 ILE A 35 ? GLU A 40 ? ILE A 35 GLU A 40 5 ? 6 HELX_P HELX_P3 3 THR A 46 ? LYS A 65 ? THR A 46 LYS A 65 1 ? 20 HELX_P HELX_P4 4 ASN A 70 ? VAL A 74 ? ASN A 70 VAL A 74 5 ? 5 HELX_P HELX_P5 5 ASP A 83 ? GLY A 98 ? ASP A 83 GLY A 98 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 1 -0.06 2 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 2 -0.04 3 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 3 -0.12 4 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 4 -0.18 5 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 5 -0.07 6 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 6 -0.04 7 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 7 -0.11 8 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 8 -0.07 9 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 9 -0.18 10 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 10 -0.10 11 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 11 -0.06 12 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 12 -0.10 13 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 13 -0.12 14 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 14 -0.11 15 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 15 -0.14 16 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 16 -0.06 17 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 17 -0.10 18 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 18 -0.09 19 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 19 -0.13 20 LYS 65 A . ? LYS 65 A PRO 66 A ? PRO 66 A 20 -0.11 # _database_PDB_matrix.entry_id 2DCE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DCE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 CYS 104 104 104 CYS CYS A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 ARG 111 111 111 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-06 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 12 ? ? 37.57 29.04 2 1 LYS A 65 ? ? -40.55 154.68 3 1 ALA A 99 ? ? -34.00 -33.73 4 1 GLN A 106 ? ? -96.84 42.80 5 2 SER A 6 ? ? -55.83 97.78 6 2 HIS A 8 ? ? -37.52 124.52 7 2 GLU A 40 ? ? -59.70 -72.84 8 2 LYS A 65 ? ? -38.41 155.05 9 2 LYS A 79 ? ? -104.36 -66.76 10 2 ALA A 99 ? ? -33.81 -34.62 11 2 GLU A 105 ? ? -34.41 -35.04 12 2 GLN A 106 ? ? -83.09 39.45 13 3 GLU A 9 ? ? -171.45 128.54 14 3 GLU A 12 ? ? 35.01 48.15 15 3 LYS A 65 ? ? -36.40 154.83 16 3 ASN A 80 ? ? -79.81 46.00 17 3 GLN A 106 ? ? -95.47 36.54 18 4 GLU A 11 ? ? -110.88 73.03 19 4 LYS A 65 ? ? -43.51 154.56 20 4 LEU A 78 ? ? 71.74 45.31 21 4 CYS A 81 ? ? -63.16 -75.07 22 4 ALA A 99 ? ? -34.09 -37.07 23 5 HIS A 8 ? ? -87.39 42.88 24 5 GLU A 10 ? ? -43.14 155.98 25 5 GLU A 30 ? ? -38.05 -36.43 26 5 ARG A 42 ? ? -37.04 155.44 27 5 ARG A 54 ? ? -51.64 -70.02 28 5 LYS A 65 ? ? -39.38 154.47 29 5 PRO A 76 ? ? -69.76 1.33 30 5 LYS A 79 ? ? -98.12 -74.58 31 5 CYS A 81 ? ? -106.25 50.42 32 5 VAL A 84 ? ? -35.83 -36.89 33 5 ALA A 107 ? ? -45.08 164.54 34 6 SER A 2 ? ? 38.99 44.56 35 6 HIS A 8 ? ? -89.95 39.13 36 6 GLU A 29 ? ? -34.73 -32.60 37 6 ARG A 42 ? ? -66.23 -178.97 38 6 GLN A 43 ? ? -95.22 -70.39 39 6 LYS A 65 ? ? -44.04 154.31 40 6 LEU A 78 ? ? -106.90 69.23 41 6 ASN A 80 ? ? -40.83 -72.53 42 6 ALA A 99 ? ? -35.01 -33.65 43 7 ARG A 54 ? ? -51.88 -70.69 44 7 LYS A 65 ? ? -35.99 154.86 45 7 LYS A 79 ? ? -99.80 -66.04 46 7 ALA A 99 ? ? -33.77 -36.73 47 7 GLN A 106 ? ? -98.06 44.07 48 8 SER A 2 ? ? -170.48 140.90 49 8 GLU A 10 ? ? -48.12 157.24 50 8 GLU A 11 ? ? -90.37 53.31 51 8 LYS A 65 ? ? -38.89 154.64 52 8 GLN A 106 ? ? -98.31 46.88 53 9 HIS A 8 ? ? -106.51 78.96 54 9 GLU A 11 ? ? -39.01 -27.03 55 9 GLU A 12 ? ? -108.70 42.08 56 9 GLU A 29 ? ? -34.26 -34.04 57 9 LYS A 65 ? ? -42.73 154.51 58 9 ASN A 80 ? ? 38.37 49.82 59 9 ALA A 99 ? ? -34.01 -35.72 60 9 ASN A 101 ? ? 34.68 51.26 61 10 GLU A 10 ? ? -122.10 -50.10 62 10 GLU A 29 ? ? -34.10 -38.96 63 10 ASN A 55 ? ? -37.28 -35.35 64 10 LYS A 65 ? ? -43.53 154.47 65 10 ALA A 99 ? ? -33.65 -37.14 66 10 ASN A 101 ? ? 36.05 50.67 67 11 GLU A 11 ? ? -98.32 -61.65 68 11 PRO A 36 ? ? -69.76 0.07 69 11 ARG A 42 ? ? -35.80 139.93 70 11 LYS A 65 ? ? -43.02 154.11 71 11 LYS A 79 ? ? -94.46 -60.36 72 11 ALA A 99 ? ? -34.63 -37.12 73 11 GLN A 106 ? ? -97.01 31.67 74 12 GLU A 10 ? ? -34.82 119.02 75 12 LYS A 14 ? ? -174.97 133.85 76 12 ASN A 55 ? ? -35.40 -39.91 77 12 LYS A 65 ? ? -37.77 154.67 78 12 LYS A 67 ? ? -49.18 151.36 79 12 GLN A 106 ? ? -104.56 58.27 80 13 GLU A 40 ? ? -93.74 40.36 81 13 GLN A 43 ? ? -86.68 -70.31 82 13 LYS A 65 ? ? -44.09 154.61 83 13 LYS A 79 ? ? -107.21 -66.82 84 13 CYS A 81 ? ? -52.58 -75.17 85 13 ALA A 99 ? ? -33.82 -37.59 86 14 LYS A 14 ? ? -172.35 135.74 87 14 GLU A 19 ? ? -39.54 136.19 88 14 ARG A 54 ? ? -52.12 -74.19 89 14 LYS A 65 ? ? -39.98 154.49 90 14 PRO A 76 ? ? -69.74 97.03 91 14 LEU A 78 ? ? -101.41 66.97 92 14 ALA A 99 ? ? -35.75 -35.76 93 14 GLN A 106 ? ? -90.10 36.90 94 15 GLU A 11 ? ? -111.76 78.95 95 15 GLN A 43 ? ? -77.37 -75.04 96 15 ASN A 55 ? ? -36.49 -39.17 97 15 LYS A 65 ? ? -38.57 154.59 98 15 LYS A 67 ? ? -47.08 152.70 99 15 PRO A 76 ? ? -69.78 97.63 100 15 ASP A 83 ? ? -101.78 78.68 101 15 VAL A 84 ? ? 33.90 34.10 102 15 ALA A 99 ? ? -34.88 -38.68 103 15 ALA A 107 ? ? -40.87 162.55 104 16 GLU A 11 ? ? -90.93 58.98 105 16 GLU A 29 ? ? -39.47 -26.75 106 16 PRO A 36 ? ? -69.77 2.97 107 16 LYS A 65 ? ? -37.51 154.84 108 16 PRO A 76 ? ? -69.77 2.58 109 16 ALA A 99 ? ? -33.84 -36.01 110 16 ALA A 107 ? ? -39.57 159.91 111 17 LEU A 13 ? ? -35.83 147.24 112 17 GLU A 29 ? ? -39.52 -35.20 113 17 LYS A 65 ? ? -39.49 155.27 114 17 GLU A 105 ? ? -38.09 -30.00 115 17 GLN A 106 ? ? -90.93 45.40 116 18 HIS A 8 ? ? -83.89 40.79 117 18 GLU A 10 ? ? -82.92 41.63 118 18 ASN A 55 ? ? -38.42 -34.42 119 18 LYS A 65 ? ? -39.06 155.03 120 18 LYS A 67 ? ? -49.59 157.82 121 18 VAL A 84 ? ? -36.52 -32.99 122 18 ALA A 99 ? ? -33.93 -36.49 123 19 SER A 2 ? ? -174.44 127.42 124 19 GLU A 10 ? ? -40.28 107.58 125 19 LYS A 65 ? ? -40.90 154.22 126 19 PRO A 76 ? ? -69.80 2.84 127 19 ALA A 99 ? ? -35.03 -33.23 128 19 GLN A 106 ? ? -104.80 57.13 129 20 SER A 5 ? ? -88.51 40.01 130 20 GLU A 9 ? ? -94.20 44.22 131 20 GLU A 10 ? ? -104.19 79.32 132 20 PRO A 36 ? ? -69.84 2.96 133 20 LYS A 65 ? ? -41.33 154.49 134 20 LYS A 79 ? ? -94.82 -70.03 135 20 ALA A 99 ? ? -34.27 -37.38 136 20 ASN A 101 ? ? 35.50 46.60 #