HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-JAN-06 2DCL TITLE STRUCTURE OF PH1503 PROTEIN FROM PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL UPF0166 PROTEIN PH1503; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PH1503; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HEXAMER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR B.BAGAUTDINOV,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2DCL 1 REMARK REVDAT 4 25-DEC-19 2DCL 1 REMARK REVDAT 3 13-JUL-11 2DCL 1 VERSN REVDAT 2 24-FEB-09 2DCL 1 VERSN REVDAT 1 08-JUL-06 2DCL 0 JRNL AUTH B.BAGAUTDINOV,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF PH1503 PROTEIN FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 15772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 790 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.23000 REMARK 3 B22 (A**2) : 9.77000 REMARK 3 B33 (A**2) : -18.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000025254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1O51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3000, 100MM ACETATE, PH 4.5, REMARK 280 MICROBATCH, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.78100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.78100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 35.82882 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -56.30503 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 907 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 924 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 931 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 911 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 141 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 54 REMARK 465 LYS A 55 REMARK 465 SER A 56 REMARK 465 ARG A 57 REMARK 465 VAL A 58 REMARK 465 HIS A 59 REMARK 465 SER A 60 REMARK 465 SER A 61 REMARK 465 ASP A 62 REMARK 465 VAL A 63 REMARK 465 ILE A 64 REMARK 465 ARG A 65 REMARK 465 LEU A 66 REMARK 465 SER A 67 REMARK 465 ILE A 115 REMARK 465 LYS A 116 REMARK 465 LYS A 117 REMARK 465 PHE A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 122 REMARK 465 ILE A 123 REMARK 465 ALA A 124 REMARK 465 GLU A 125 REMARK 465 ARG A 126 REMARK 465 GLN A 127 REMARK 465 MET B 1 REMARK 465 SER B 56 REMARK 465 ARG B 57 REMARK 465 VAL B 58 REMARK 465 HIS B 59 REMARK 465 SER B 60 REMARK 465 SER B 61 REMARK 465 ASP B 62 REMARK 465 VAL B 63 REMARK 465 ILE B 64 REMARK 465 ARG B 65 REMARK 465 LEU B 66 REMARK 465 THR B 111 REMARK 465 GLN B 112 REMARK 465 GLU B 113 REMARK 465 GLU B 114 REMARK 465 ILE B 115 REMARK 465 LYS B 116 REMARK 465 LYS B 117 REMARK 465 PHE B 118 REMARK 465 GLU B 119 REMARK 465 GLU B 120 REMARK 465 ASP B 121 REMARK 465 ALA B 122 REMARK 465 ILE B 123 REMARK 465 ALA B 124 REMARK 465 GLU B 125 REMARK 465 ARG B 126 REMARK 465 GLN B 127 REMARK 465 MET C 1 REMARK 465 LYS C 55 REMARK 465 SER C 56 REMARK 465 ARG C 57 REMARK 465 VAL C 58 REMARK 465 HIS C 59 REMARK 465 SER C 60 REMARK 465 SER C 61 REMARK 465 ASP C 62 REMARK 465 VAL C 63 REMARK 465 TRP C 108 REMARK 465 VAL C 109 REMARK 465 GLY C 110 REMARK 465 THR C 111 REMARK 465 GLN C 112 REMARK 465 GLU C 113 REMARK 465 GLU C 114 REMARK 465 ILE C 115 REMARK 465 LYS C 116 REMARK 465 LYS C 117 REMARK 465 PHE C 118 REMARK 465 GLU C 119 REMARK 465 GLU C 120 REMARK 465 ASP C 121 REMARK 465 ALA C 122 REMARK 465 ILE C 123 REMARK 465 ALA C 124 REMARK 465 GLU C 125 REMARK 465 ARG C 126 REMARK 465 GLN C 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 98 CG MET B 98 SD 0.196 REMARK 500 MET C 98 CG MET C 98 SD 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 25 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 25 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 -179.26 -171.33 REMARK 500 VAL A 109 -34.23 -137.76 REMARK 500 VAL B 109 -140.80 -160.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001503.1 RELATED DB: TARGETDB DBREF 2DCL A 1 127 UNP O59172 Y1503_PYRHO 1 127 DBREF 2DCL B 1 127 UNP O59172 Y1503_PYRHO 1 127 DBREF 2DCL C 1 127 UNP O59172 Y1503_PYRHO 1 127 SEQRES 1 A 127 MET VAL GLU VAL GLU HIS TRP ASN THR LEU ARG LEU ARG SEQRES 2 A 127 ILE TYR ILE GLY GLU ASN ASP LYS TRP GLU GLY ARG PRO SEQRES 3 A 127 LEU TYR LYS VAL ILE VAL GLU LYS LEU ARG GLU MET GLY SEQRES 4 A 127 ILE ALA GLY ALA THR VAL TYR ARG GLY ILE TYR GLY PHE SEQRES 5 A 127 GLY LYS LYS SER ARG VAL HIS SER SER ASP VAL ILE ARG SEQRES 6 A 127 LEU SER THR ASP LEU PRO ILE ILE VAL GLU VAL VAL ASP SEQRES 7 A 127 ARG GLY HIS ASN ILE GLU LYS VAL VAL ASN VAL ILE LYS SEQRES 8 A 127 PRO MET ILE LYS ASP GLY MET ILE THR VAL GLU PRO THR SEQRES 9 A 127 ILE VAL LEU TRP VAL GLY THR GLN GLU GLU ILE LYS LYS SEQRES 10 A 127 PHE GLU GLU ASP ALA ILE ALA GLU ARG GLN SEQRES 1 B 127 MET VAL GLU VAL GLU HIS TRP ASN THR LEU ARG LEU ARG SEQRES 2 B 127 ILE TYR ILE GLY GLU ASN ASP LYS TRP GLU GLY ARG PRO SEQRES 3 B 127 LEU TYR LYS VAL ILE VAL GLU LYS LEU ARG GLU MET GLY SEQRES 4 B 127 ILE ALA GLY ALA THR VAL TYR ARG GLY ILE TYR GLY PHE SEQRES 5 B 127 GLY LYS LYS SER ARG VAL HIS SER SER ASP VAL ILE ARG SEQRES 6 B 127 LEU SER THR ASP LEU PRO ILE ILE VAL GLU VAL VAL ASP SEQRES 7 B 127 ARG GLY HIS ASN ILE GLU LYS VAL VAL ASN VAL ILE LYS SEQRES 8 B 127 PRO MET ILE LYS ASP GLY MET ILE THR VAL GLU PRO THR SEQRES 9 B 127 ILE VAL LEU TRP VAL GLY THR GLN GLU GLU ILE LYS LYS SEQRES 10 B 127 PHE GLU GLU ASP ALA ILE ALA GLU ARG GLN SEQRES 1 C 127 MET VAL GLU VAL GLU HIS TRP ASN THR LEU ARG LEU ARG SEQRES 2 C 127 ILE TYR ILE GLY GLU ASN ASP LYS TRP GLU GLY ARG PRO SEQRES 3 C 127 LEU TYR LYS VAL ILE VAL GLU LYS LEU ARG GLU MET GLY SEQRES 4 C 127 ILE ALA GLY ALA THR VAL TYR ARG GLY ILE TYR GLY PHE SEQRES 5 C 127 GLY LYS LYS SER ARG VAL HIS SER SER ASP VAL ILE ARG SEQRES 6 C 127 LEU SER THR ASP LEU PRO ILE ILE VAL GLU VAL VAL ASP SEQRES 7 C 127 ARG GLY HIS ASN ILE GLU LYS VAL VAL ASN VAL ILE LYS SEQRES 8 C 127 PRO MET ILE LYS ASP GLY MET ILE THR VAL GLU PRO THR SEQRES 9 C 127 ILE VAL LEU TRP VAL GLY THR GLN GLU GLU ILE LYS LYS SEQRES 10 C 127 PHE GLU GLU ASP ALA ILE ALA GLU ARG GLN HET AMP A 901 23 HET AMP B 902 23 HET AMP B 903 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 AMP 3(C10 H14 N5 O7 P) FORMUL 7 HOH *123(H2 O) HELIX 1 1 LEU A 27 MET A 38 1 12 HELIX 2 2 GLY A 80 LYS A 91 1 12 HELIX 3 3 LEU B 27 MET B 38 1 12 HELIX 4 4 GLY B 80 LYS B 91 1 12 HELIX 5 5 LEU C 27 GLY C 39 1 13 HELIX 6 6 GLY C 80 LYS C 91 1 12 HELIX 7 7 PRO C 92 ILE C 94 5 3 SHEET 1 A10 TYR A 50 PHE A 52 0 SHEET 2 A10 ALA B 43 ARG B 47 -1 O VAL B 45 N TYR A 50 SHEET 3 A10 PRO B 71 ARG B 79 -1 O ILE B 73 N TYR B 46 SHEET 4 A10 HIS B 6 GLY B 17 -1 N ILE B 16 O ILE B 72 SHEET 5 A10 MET B 98 VAL B 106 -1 O MET B 98 N TYR B 15 SHEET 6 A10 MET C 98 LEU C 107 -1 O LEU C 107 N ILE B 99 SHEET 7 A10 THR C 9 GLY C 17 -1 N TYR C 15 O MET C 98 SHEET 8 A10 PRO C 71 ARG C 79 -1 O VAL C 76 N LEU C 12 SHEET 9 A10 GLY C 42 ARG C 47 -1 N THR C 44 O GLU C 75 SHEET 10 A10 TYR B 50 GLY B 53 -1 N TYR B 50 O VAL C 45 SHEET 1 B 8 ILE A 105 TRP A 108 0 SHEET 2 B 8 MET C 98 LEU C 107 -1 O ILE C 99 N LEU A 107 SHEET 3 B 8 MET B 98 VAL B 106 -1 N ILE B 99 O LEU C 107 SHEET 4 B 8 MET A 98 PRO A 103 -1 N VAL A 101 O ILE B 105 SHEET 5 B 8 THR A 9 GLY A 17 -1 N TYR A 15 O MET A 98 SHEET 6 B 8 PRO A 71 ARG A 79 -1 O VAL A 76 N LEU A 12 SHEET 7 B 8 ALA A 43 ARG A 47 -1 N THR A 44 O GLU A 75 SHEET 8 B 8 TYR C 50 PHE C 52 -1 O TYR C 50 N VAL A 45 SHEET 1 C 2 LYS A 21 TRP A 22 0 SHEET 2 C 2 ARG A 25 PRO A 26 -1 O ARG A 25 N TRP A 22 SHEET 1 D 2 LYS B 21 TRP B 22 0 SHEET 2 D 2 ARG B 25 PRO B 26 -1 O ARG B 25 N TRP B 22 SHEET 1 E 2 LYS C 21 TRP C 22 0 SHEET 2 E 2 ARG C 25 PRO C 26 -1 O ARG C 25 N TRP C 22 SITE 1 AC1 11 ALA A 41 GLY A 42 ALA A 43 THR A 44 SITE 2 AC1 11 GLU A 75 VAL A 77 GLY C 53 ARG C 65 SITE 3 AC1 11 PRO C 71 ASP C 96 MET C 98 SITE 1 AC2 10 TYR A 15 GLY A 51 PHE A 52 GLY A 53 SITE 2 AC2 10 PRO A 71 ALA B 43 THR B 44 GLU B 75 SITE 3 AC2 10 VAL B 76 VAL B 77 SITE 1 AC3 13 TYR B 15 GLY B 51 PHE B 52 PRO B 71 SITE 2 AC3 13 ASP B 96 GLY B 97 MET B 98 HOH B 940 SITE 3 AC3 13 GLY C 42 ALA C 43 THR C 44 GLU C 75 SITE 4 AC3 13 VAL C 77 CRYST1 107.562 59.647 66.738 90.00 122.47 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009297 0.000000 0.005916 0.00000 SCALE2 0.000000 0.016765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017760 0.00000