data_2DD2 # _entry.id 2DD2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DD2 pdb_00002dd2 10.2210/pdb2dd2/pdb RCSB RCSB025271 ? ? WWPDB D_1000025271 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DD1 ;3 sheared GA pairs closed by ua and cg WC pairs, 5'gguGGAggcu/3'pccaAAGccg ; unspecified PDB 2DD3 ;a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs, 5'gguGAAggcu/3'pccgAAGccg ; unspecified PDB 1XV0 ;3 sheared GA pairs closed by ug wobble and cg WC pairs, 5'gguGGAggcu/3'pccgAAGccg ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DD2 _pdbx_database_status.recvd_initial_deposition_date 2006-01-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, G.' 1 'Kennedy, S.D.' 2 'Krugh, T.R.' 3 'Turner, D.H.' 4 # _citation.id primary _citation.title 'An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA' _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 6889 _citation.page_last 6903 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16734425 _citation.pdbx_database_id_DOI 10.1021/bi0524464 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, G.' 1 ? primary 'Kennedy, S.D.' 2 ? primary 'Qiao, J.' 3 ? primary 'Krugh, T.R.' 4 ? primary 'Turner, D.H.' 5 ? # _cell.entry_id 2DD2 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DD2 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'" 3256.996 1 ? ? ? ? 2 polymer syn "5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'" 3183.991 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUGAAGGCU GGUGAAGGCU A ? 2 polyribonucleotide no yes 'GCCGAAGCC(P5P)' GCCGAAGCCA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 G n 1 9 C n 1 10 U n 2 1 G n 2 2 C n 2 3 C n 2 4 G n 2 5 A n 2 6 A n 2 7 G n 2 8 C n 2 9 C n 2 10 P5P n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2DD2 2DD2 ? ? ? 2 2 PDB 2DD2 2DD2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DD2 A 1 ? 10 ? 2DD2 1 ? 10 ? 1 10 2 2 2DD2 B 1 ? 10 ? 2DD2 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 P5P 'RNA linking' n ;PURINE RIBOSIDE-5'-MONOPHOSPHATE ; ? 'C10 H13 N4 O7 P' 332.207 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '80mM NaCl, 10mM sodium phosphate, 0.5mM Na2EDTA, 2mM total duplex concentrations, pH 5.1, pD 7.3' _pdbx_nmr_sample_details.solvent_system ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 500 ? 2 INOVA Varian 600 ? 3 AVANCE Bruker 500 ? # _pdbx_nmr_refine.entry_id 2DD2 _pdbx_nmr_refine.method 'distance geometry, simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DD2 _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 27 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DD2 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing Felix ? ? 1 refinement Discover ? ? 2 collection VNMR ? ? 3 # _exptl.entry_id 2DD2 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DD2 _struct.title ;An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DD2 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;alternating, conformation exchange, dynamics, sheared AA pair, sheared GA pair, thermodynamics, RNA secondary structure, A-minor motif, kink-turn, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B C 9 "O3'" ? ? ? 1_555 B P5P 10 P ? ? B C 19 B P5P 20 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B G 7 O6 ? ? A U 3 B G 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 B G 7 N1 ? ? A U 3 B G 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B A 6 N7 ? ? A G 4 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 N3 ? ? ? 1_555 B A 6 N6 ? ? A G 4 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A A 6 N7 ? ? ? 1_555 B G 4 N2 ? ? A A 6 B G 14 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 2DD2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DD2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n B 2 1 G 1 11 11 G G B . n B 2 2 C 2 12 12 C C B . n B 2 3 C 3 13 13 C C B . n B 2 4 G 4 14 14 G G B . n B 2 5 A 5 15 15 A A B . n B 2 6 A 6 16 16 A A B . n B 2 7 G 7 17 17 G G B . n B 2 8 C 8 18 18 C C B . n B 2 9 C 9 19 19 C C B . n B 2 10 P5P 10 20 20 P5P P5P B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id P5P _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id P5P _pdbx_struct_mod_residue.auth_seq_id 20 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ;PURINE RIBOSIDE-5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.92 108.50 4.42 0.70 N 2 1 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.23 108.50 5.73 0.70 N 3 1 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.62 108.50 5.12 0.70 N 4 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.84 108.50 4.34 0.70 N 5 1 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.63 108.50 5.13 0.70 N 6 1 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.87 108.50 4.37 0.70 N 7 2 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.85 108.50 4.35 0.70 N 8 2 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.44 108.50 5.94 0.70 N 9 2 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.86 108.50 5.36 0.70 N 10 2 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.32 108.50 4.82 0.70 N 11 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.82 108.50 4.32 0.70 N 12 2 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.86 108.50 4.36 0.70 N 13 2 "C3'" B G 14 ? ? "O3'" B G 14 ? ? P B A 15 ? ? 127.12 119.70 7.42 1.20 Y 14 2 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.78 108.50 4.28 0.70 N 15 3 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.75 108.50 4.25 0.70 N 16 3 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 112.72 108.50 4.22 0.70 N 17 3 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.96 108.50 5.46 0.70 N 18 3 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.59 108.50 5.09 0.70 N 19 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.07 108.50 4.57 0.70 N 20 3 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.74 108.50 5.24 0.70 N 21 4 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.33 108.50 5.83 0.70 N 22 4 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.61 108.50 5.11 0.70 N 23 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 24 4 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.56 108.50 5.06 0.70 N 25 4 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.97 108.50 4.47 0.70 N 26 5 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 113.03 108.50 4.53 0.70 N 27 5 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.45 108.50 5.95 0.70 N 28 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.83 108.50 4.33 0.70 N 29 5 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.91 108.50 4.41 0.70 N 30 5 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.85 108.50 4.35 0.70 N 31 6 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.77 108.50 4.27 0.70 N 32 6 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.47 108.50 5.97 0.70 N 33 6 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.47 108.50 4.97 0.70 N 34 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.77 108.50 4.27 0.70 N 35 6 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.90 108.50 4.40 0.70 N 36 7 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.40 108.50 5.90 0.70 N 37 7 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.55 108.50 5.05 0.70 N 38 7 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.85 108.50 4.35 0.70 N 39 7 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.49 108.50 4.99 0.70 N 40 8 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.84 108.50 4.34 0.70 N 41 8 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.05 108.50 5.55 0.70 N 42 8 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.60 108.50 5.10 0.70 N 43 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 44 8 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.49 108.50 4.99 0.70 N 45 9 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.00 108.50 5.50 0.70 N 46 9 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.16 108.50 4.66 0.70 N 47 9 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.64 108.50 5.14 0.70 N 48 9 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.14 108.50 4.64 0.70 N 49 9 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 114.04 108.50 5.54 0.70 N 50 10 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.46 108.50 5.96 0.70 N 51 10 "O4'" A A 5 ? ? "C1'" A A 5 ? ? N9 A A 5 ? ? 113.24 108.50 4.74 0.70 N 52 10 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.61 108.50 5.11 0.70 N 53 10 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.82 108.50 4.32 0.70 N 54 10 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.70 108.50 5.20 0.70 N 55 10 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.77 108.50 4.27 0.70 N 56 11 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.53 108.50 6.03 0.70 N 57 11 "C3'" A G 4 ? ? "O3'" A G 4 ? ? P A A 5 ? ? 126.93 119.70 7.23 1.20 Y 58 11 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.76 108.50 4.26 0.70 N 59 11 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.86 108.50 4.36 0.70 N 60 11 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.80 108.50 4.30 0.70 N 61 12 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.07 108.50 5.57 0.70 N 62 12 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.79 108.50 4.29 0.70 N 63 13 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.39 108.50 5.89 0.70 N 64 13 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 112.72 108.50 4.22 0.70 N 65 13 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.13 108.50 4.63 0.70 N 66 13 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.73 108.50 4.23 0.70 N 67 14 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.72 108.50 4.22 0.70 N 68 14 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.32 108.50 5.82 0.70 N 69 14 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.38 108.50 4.88 0.70 N 70 14 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.89 108.50 4.39 0.70 N 71 14 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.79 108.50 4.29 0.70 N 72 15 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.91 108.50 4.41 0.70 N 73 15 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.40 108.50 5.90 0.70 N 74 15 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.48 108.50 4.98 0.70 N 75 15 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.75 108.50 4.25 0.70 N 76 15 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.27 108.50 4.77 0.70 N 77 15 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.82 108.50 4.32 0.70 N 78 16 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.96 108.50 5.46 0.70 N 79 16 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.48 108.50 4.98 0.70 N 80 16 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.74 108.50 4.24 0.70 N 81 16 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.02 108.50 4.52 0.70 N 82 17 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.12 108.50 5.62 0.70 N 83 17 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.42 108.50 4.92 0.70 N 84 17 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.80 108.50 4.30 0.70 N 85 17 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.37 108.50 4.87 0.70 N 86 17 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.75 108.50 4.25 0.70 N 87 18 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.33 108.50 5.83 0.70 N 88 18 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.23 108.50 4.73 0.70 N 89 18 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.86 108.50 4.36 0.70 N 90 18 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.06 108.50 4.56 0.70 N 91 18 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.81 108.50 4.31 0.70 N 92 19 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.70 108.50 4.20 0.70 N 93 19 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.29 108.50 5.79 0.70 N 94 19 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.53 108.50 5.03 0.70 N 95 19 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.70 108.50 5.20 0.70 N 96 19 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.71 108.50 4.21 0.70 N 97 19 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.19 108.50 4.69 0.70 N 98 19 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.46 108.50 4.96 0.70 N 99 19 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.70 108.50 4.20 0.70 N 100 20 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.70 108.50 4.20 0.70 N 101 20 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.36 108.50 5.86 0.70 N 102 20 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.45 108.50 4.95 0.70 N 103 20 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.75 108.50 4.25 0.70 N 104 20 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.24 108.50 4.74 0.70 N 105 20 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.71 108.50 4.21 0.70 N 106 21 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.09 108.50 5.59 0.70 N 107 21 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.51 108.50 5.01 0.70 N 108 21 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.82 108.50 4.32 0.70 N 109 21 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.44 108.50 4.94 0.70 N 110 22 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.77 108.50 4.27 0.70 N 111 22 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.40 108.50 5.90 0.70 N 112 22 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.62 108.50 5.12 0.70 N 113 22 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.00 108.50 4.50 0.70 N 114 22 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.79 108.50 5.29 0.70 N 115 22 "C3'" B G 14 ? ? "O3'" B G 14 ? ? P B A 15 ? ? 127.31 119.70 7.61 1.20 Y 116 22 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.75 108.50 4.25 0.70 N 117 23 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.79 108.50 4.29 0.70 N 118 23 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.42 108.50 5.92 0.70 N 119 23 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.92 108.50 4.42 0.70 N 120 23 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 121 23 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.55 108.50 5.05 0.70 N 122 24 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.23 108.50 5.73 0.70 N 123 24 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.31 108.50 4.81 0.70 N 124 24 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.72 108.50 4.22 0.70 N 125 24 "C3'" B G 14 ? ? "O3'" B G 14 ? ? P B A 15 ? ? 127.00 119.70 7.30 1.20 Y 126 25 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.96 108.50 5.46 0.70 N 127 25 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.41 108.50 4.91 0.70 N 128 25 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.92 108.50 4.42 0.70 N 129 25 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.71 108.50 4.21 0.70 N 130 25 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 113.05 108.50 4.55 0.70 N 131 26 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.71 108.50 4.21 0.70 N 132 26 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.15 108.50 5.65 0.70 N 133 26 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.81 108.50 4.31 0.70 N 134 26 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.88 108.50 4.38 0.70 N 135 26 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.84 108.50 4.34 0.70 N 136 27 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.19 108.50 5.69 0.70 N 137 27 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.42 108.50 4.92 0.70 N 138 27 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.86 108.50 4.36 0.70 N 139 27 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.06 108.50 4.56 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 A A 5 ? ? 0.062 'SIDE CHAIN' 2 2 A B 15 ? ? 0.081 'SIDE CHAIN' 3 2 A B 16 ? ? 0.056 'SIDE CHAIN' 4 3 A A 5 ? ? 0.062 'SIDE CHAIN' 5 4 A A 5 ? ? 0.056 'SIDE CHAIN' 6 5 A A 5 ? ? 0.063 'SIDE CHAIN' 7 5 G B 11 ? ? 0.057 'SIDE CHAIN' 8 6 A B 16 ? ? 0.055 'SIDE CHAIN' 9 7 A A 5 ? ? 0.067 'SIDE CHAIN' 10 7 A B 15 ? ? 0.062 'SIDE CHAIN' 11 7 A B 16 ? ? 0.051 'SIDE CHAIN' 12 8 A B 15 ? ? 0.061 'SIDE CHAIN' 13 8 A B 16 ? ? 0.070 'SIDE CHAIN' 14 8 C B 18 ? ? 0.065 'SIDE CHAIN' 15 9 G A 4 ? ? 0.051 'SIDE CHAIN' 16 9 A A 5 ? ? 0.064 'SIDE CHAIN' 17 10 A A 5 ? ? 0.075 'SIDE CHAIN' 18 11 G B 11 ? ? 0.064 'SIDE CHAIN' 19 12 A A 5 ? ? 0.062 'SIDE CHAIN' 20 12 G B 11 ? ? 0.067 'SIDE CHAIN' 21 12 A B 15 ? ? 0.071 'SIDE CHAIN' 22 13 A B 15 ? ? 0.066 'SIDE CHAIN' 23 15 A B 15 ? ? 0.059 'SIDE CHAIN' 24 15 A B 16 ? ? 0.059 'SIDE CHAIN' 25 16 G B 14 ? ? 0.068 'SIDE CHAIN' 26 16 A B 15 ? ? 0.057 'SIDE CHAIN' 27 16 A B 16 ? ? 0.059 'SIDE CHAIN' 28 17 A B 15 ? ? 0.062 'SIDE CHAIN' 29 18 A A 5 ? ? 0.060 'SIDE CHAIN' 30 19 A A 5 ? ? 0.078 'SIDE CHAIN' 31 19 A B 15 ? ? 0.071 'SIDE CHAIN' 32 19 A B 16 ? ? 0.054 'SIDE CHAIN' 33 20 A B 15 ? ? 0.061 'SIDE CHAIN' 34 20 A B 16 ? ? 0.061 'SIDE CHAIN' 35 21 A A 5 ? ? 0.060 'SIDE CHAIN' 36 22 A B 15 ? ? 0.064 'SIDE CHAIN' 37 22 A B 16 ? ? 0.072 'SIDE CHAIN' 38 23 A A 5 ? ? 0.060 'SIDE CHAIN' 39 23 G B 11 ? ? 0.058 'SIDE CHAIN' 40 23 A B 16 ? ? 0.057 'SIDE CHAIN' 41 24 A A 5 ? ? 0.055 'SIDE CHAIN' 42 24 A B 15 ? ? 0.057 'SIDE CHAIN' 43 24 A B 16 ? ? 0.069 'SIDE CHAIN' 44 24 C B 19 ? ? 0.073 'SIDE CHAIN' 45 26 G B 11 ? ? 0.059 'SIDE CHAIN' 46 26 A B 15 ? ? 0.058 'SIDE CHAIN' 47 27 A A 5 ? ? 0.064 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DD2 'a-form double helix' 2DD2 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 9 1_555 -0.755 -0.216 -0.105 -7.985 -11.761 -0.347 1 A_G1:C19_B A 1 ? B 19 ? 19 1 1 A G 2 1_555 B C 8 1_555 -0.257 -0.026 -0.260 -13.994 -19.856 1.527 2 A_G2:C18_B A 2 ? B 18 ? 19 1 1 A U 3 1_555 B G 7 1_555 2.491 -0.357 0.187 -15.865 -16.188 3.978 3 A_U3:G17_B A 3 ? B 17 ? 28 ? 1 A G 4 1_555 B A 6 1_555 6.733 -3.867 -0.483 -11.225 -15.112 -0.789 4 A_G4:A16_B A 4 ? B 16 ? 11 9 1 A A 6 1_555 B G 4 1_555 -6.986 -6.367 -0.694 -14.358 -8.654 -25.700 5 A_A6:G14_B A 6 ? B 14 ? ? 10 1 A G 7 1_555 B C 3 1_555 -0.749 -0.188 -0.199 -6.791 -9.400 0.120 6 A_G7:C13_B A 7 ? B 13 ? 19 1 1 A G 8 1_555 B C 2 1_555 -0.555 -0.098 0.155 9.063 -4.519 -0.483 7 A_G8:C12_B A 8 ? B 12 ? 19 1 1 A C 9 1_555 B G 1 1_555 0.783 -0.183 -0.297 17.528 -14.292 0.198 8 A_C9:G11_B A 9 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 9 1_555 A G 2 1_555 B C 8 1_555 0.182 -1.516 3.464 2.702 6.416 34.426 -3.494 0.111 3.144 10.705 -4.508 35.102 1 AA_G1G2:C18C19_BB A 1 ? B 19 ? A 2 ? B 18 ? 1 A G 2 1_555 B C 8 1_555 A U 3 1_555 B G 7 1_555 0.427 -1.123 3.320 1.413 4.091 44.111 -1.871 -0.435 3.221 5.431 -1.876 44.312 2 AA_G2U3:G17C18_BB A 2 ? B 18 ? A 3 ? B 17 ? 1 A U 3 1_555 B G 7 1_555 A G 4 1_555 B A 6 1_555 -0.096 -0.543 3.338 11.188 -1.607 59.260 -0.460 0.657 3.286 -1.609 -11.204 60.232 3 AA_U3G4:A16G17_BB A 3 ? B 17 ? A 4 ? B 16 ? 1 A A 6 1_555 B G 4 1_555 A G 7 1_555 B C 3 1_555 1.778 -0.978 3.355 3.629 -2.846 63.669 -0.796 -1.518 3.477 -2.694 -3.435 63.818 4 AA_A6G7:C13G14_BB A 6 ? B 14 ? A 7 ? B 13 ? 1 A G 7 1_555 B C 3 1_555 A G 8 1_555 B C 2 1_555 -0.187 -1.694 2.910 -3.292 2.104 28.510 -3.821 -0.268 2.783 4.247 6.646 28.771 5 AA_G7G8:C12C13_BB A 7 ? B 13 ? A 8 ? B 12 ? 1 A G 8 1_555 B C 2 1_555 A C 9 1_555 B G 1 1_555 -0.018 -1.585 3.108 1.009 3.183 35.762 -2.994 0.163 2.959 5.169 -1.639 35.913 6 AA_G8C9:G11C12_BB A 8 ? B 12 ? A 9 ? B 11 ? #