HEADER IMMUNE SYSTEM 02-FEB-06 2DDQ TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF A R310 ANTIBODY TITLE 2 COMPLEXED WITH (R)-HNE-HISTIDINE ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: R310 ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: R310 ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOCLONAL ANTIBODY, 4-HYDROXY-2-NONENAL, IMMUNOGLOBULIN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ITO REVDAT 2 24-FEB-09 2DDQ 1 VERSN REVDAT 1 11-JUL-06 2DDQ 0 JRNL AUTH M.AKAGAWA,S.ITO,K.TOYODA,Y.ISHII,E.TATSUDA, JRNL AUTH 2 T.SHIBATA,S.YAMAGUCHI,Y.KAWAI,K.ISHINO,Y.KISHI, JRNL AUTH 3 T.ADACHI,T.TSUBATA,Y.TAKASAKI,N.HATTORI,T.MATSUDA, JRNL AUTH 4 K.UCHIDA JRNL TITL BISPECIFIC ABS AGAINST MODIFIED PROTEIN AND DNA JRNL TITL 2 WITH OXIDIZED LIPIDS JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 6160 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16603628 JRNL DOI 10.1073/PNAS.0600865103 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ITO,E.TATSUDA,K.ISHINO,K.SUZUKI,H.SAKAI,K.UCHIDA REMARK 1 TITL CRYSTALLIZATION AND MOLECULAR-REPLACEMENT STUDIES REMARK 1 TITL 2 OF THE MONOCLONAL ANTIBODY MABR310 SPECIFIC FOR REMARK 1 TITL 3 THE (R)-HNE-MODIFIED PROTEIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 562 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16754982 REMARK 1 DOI 10.1107/S1744309106016630 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1391391.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 18734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2373 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.46000 REMARK 3 B22 (A**2) : 9.98000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.920 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.880 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.150 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.44 REMARK 3 BSOL : 57.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ALL_PARAM.TXT REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ALL_TOP.TXT REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DDQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB025295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 35.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.89700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.89700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS H 40 CB CE REMARK 480 LEU H 141 CD2 REMARK 480 SER H 161 OG REMARK 480 SER H 186 OG REMARK 480 VAL H 206 CG1 CG2 REMARK 480 LEU L 9 CD2 REMARK 480 LEU L 38 CD1 REMARK 480 GLU L 84 OE1 OE2 REMARK 480 LEU L 109 CD2 REMARK 480 ARG L 193 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE L 144 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 41 125.55 -28.47 REMARK 500 GLN H 43 -169.21 -129.38 REMARK 500 ASP H 56 18.76 59.77 REMARK 500 ALA H 92 -178.23 171.27 REMARK 500 PHE H 146 138.89 -172.80 REMARK 500 PRO H 149 -169.70 -114.38 REMARK 500 GLN H 171 -104.96 -92.24 REMARK 500 SER H 172 -103.81 -70.88 REMARK 500 VAL L 56 -53.80 79.41 REMARK 500 SER L 57 21.55 -141.60 REMARK 500 SER L 206 139.51 -178.87 REMARK 500 ASN L 217 28.15 -77.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE L 144 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR H 132 -16.95 REMARK 500 SER H 172 -10.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 558 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH L 565 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH H 572 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH L 577 DISTANCE = 6.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE H 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HRB L 502 DBREF 2DDQ H 10 113 UNP Q9JL75 Q9JL75_MOUSE 1 109 DBREF 2DDQ L 1 218 PDB 2DDQ 2DDQ 1 218 SEQRES 1 H 213 LYS VAL LYS LEU GLN GLU SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 213 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 213 TYR THR PHE THR SER TYR VAL MET HIS TRP VAL LYS GLN SEQRES 4 H 213 LYS PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 213 PRO TYR ASN ASP GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 213 GLY LYS ALA THR LEU THR SER ASP LYS SER SER SER THR SEQRES 7 H 213 ALA TYR MET GLU LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 213 ALA VAL TYR TYR CYS ALA PRO TYR GLY GLY TYR TRP GLY SEQRES 9 H 213 GLN GLY THR THR VAL THR VAL SER SER ALA LYS THR THR SEQRES 10 H 213 ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP SEQRES 11 H 213 THR THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS SEQRES 12 H 213 GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER SEQRES 13 H 213 GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 14 H 213 LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR SEQRES 15 H 213 VAL THR SER SER THR TRP PRO SER GLN SER ILE THR CYS SEQRES 16 H 213 ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS SEQRES 17 H 213 LYS ILE GLU PRO ARG SEQRES 1 L 218 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 TYR CYS PHE GLN GLY SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 218 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU HET EPE H 501 15 HET HRB L 502 25 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM HRB N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2- HETNAM 2 HRB PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE HETSYN EPE HEPES FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 HRB C17 H27 N3 O5 FORMUL 5 HOH *149(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 GLU H 62 LYS H 65 5 4 HELIX 3 3 THR H 87 SER H 91 5 5 HELIX 4 4 SER H 156 SER H 158 5 3 HELIX 5 5 GLU L 84 LEU L 88 5 5 HELIX 6 6 SER L 126 SER L 132 1 7 HELIX 7 7 LYS L 188 GLU L 192 1 5 SHEET 1 A 4 LYS H 3 GLU H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 A 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 A 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 B 6 GLU H 10 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 108 N GLU H 10 SHEET 3 B 6 ALA H 92 ALA H 97 -1 N ALA H 92 O VAL H 109 SHEET 4 B 6 MET H 34 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 B 6 THR H 58 TYR H 60 -1 O LYS H 59 N TYR H 50 SHEET 1 C 4 SER H 120 LEU H 124 0 SHEET 2 C 4 SER H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 C 4 TYR H 175 THR H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 C 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 SER H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 D 4 TYR H 175 THR H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 D 4 VAL H 169 LEU H 170 -1 N VAL H 169 O THR H 176 SHEET 1 E 3 THR H 151 TRP H 154 0 SHEET 2 E 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 E 3 THR H 204 LYS H 209 -1 O THR H 204 N HIS H 199 SHEET 1 F 4 MET L 4 THR L 7 0 SHEET 2 F 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 F 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 F 4 PHE L 67 SER L 72 -1 N SER L 70 O THR L 77 SHEET 1 G 6 SER L 10 VAL L 13 0 SHEET 2 G 6 THR L 107 LEU L 111 1 O LYS L 108 N LEU L 11 SHEET 3 G 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 G 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 G 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 G 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 H 4 SER L 10 VAL L 13 0 SHEET 2 H 4 THR L 107 LEU L 111 1 O LYS L 108 N LEU L 11 SHEET 3 H 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 H 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 I 4 THR L 119 PHE L 123 0 SHEET 2 I 4 GLY L 134 PHE L 144 -1 O VAL L 138 N PHE L 123 SHEET 3 I 4 TYR L 178 THR L 187 -1 O MET L 180 N LEU L 141 SHEET 4 I 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 J 4 SER L 158 ARG L 160 0 SHEET 2 J 4 ILE L 149 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 J 4 SER L 196 HIS L 203 -1 O GLU L 200 N LYS L 152 SHEET 4 J 4 ILE L 210 ASN L 215 -1 O ILE L 210 N ALA L 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.09 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -0.20 CISPEP 2 GLU H 148 PRO H 149 0 -0.05 CISPEP 3 TRP H 188 PRO H 189 0 -0.11 CISPEP 4 THR L 7 PRO L 8 0 -0.07 CISPEP 5 VAL L 99 PRO L 100 0 0.02 CISPEP 6 TYR L 145 PRO L 146 0 0.11 SITE 1 AC1 7 SER H 7 GLY H 8 PRO H 9 GLU H 10 SITE 2 AC1 7 LEU H 11 TYR H 80 HOH H 557 SITE 1 AC2 8 HIS H 35 VAL H 37 TYR H 50 HIS L 31 SITE 2 AC2 8 ASN L 33 TYR L 37 GLU L 39 GLY L 96 CRYST1 127.318 65.794 64.310 90.00 118.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007854 0.000000 0.004313 0.00000 SCALE2 0.000000 0.015199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017739 0.00000