HEADER HYDROLASE 16-FEB-06 2DEO TITLE 1510-N MEMBRANE PROTEASE SPECIFIC FOR A STOMATIN HOMOLOG FROM TITLE 2 PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 441AA LONG HYPOTHETICAL NFED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 16-236; COMPND 5 SYNONYM: 1510-N MEMBRANE PROTEASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH1510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS MEMBRANE PROTEASE, SPECIFIC FOR A STOMATIN HOMOLOG, ARCHAEA, KEYWDS 2 PYROCOCCUS, THERMOSTABLE, CATALYTIC DYAD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,I.MATSUI REVDAT 3 13-JUL-11 2DEO 1 VERSN REVDAT 2 24-FEB-09 2DEO 1 VERSN REVDAT 1 16-MAY-06 2DEO 0 JRNL AUTH H.YOKOYAMA,E.MATSUI,T.AKIBA,K.HARATA,I.MATSUI JRNL TITL MOLECULAR STRUCTURE OF A NOVEL MEMBRANE PROTEASE SPECIFIC JRNL TITL 2 FOR A STOMATIN HOMOLOG FROM THE HYPERTHERMOPHILIC ARCHAEON JRNL TITL 3 PYROCOCCUS HORIKOSHII JRNL REF J.MOL.BIOL. V. 358 1152 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16574150 JRNL DOI 10.1016/J.JMB.2006.02.052 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOKOYAMA,I.MATSUI REMARK 1 TITL A NOVEL THERMOSTABLE MEMBRANE PROTEASE FORMING AN OPERON REMARK 1 TITL 2 WITH A STOMATIN HOMOLOG FROM THE HYPERTHERMOPHILIC REMARK 1 TITL 3 ARCHAEBACTERIUM PYROCOCCUS HORIKOSHII REMARK 1 REF J.BIOL.CHEM. V. 280 6588 2005 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15611110 REMARK 1 DOI 10.1074/JBC.M411748200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2211094.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1803 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 217 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 2.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.63 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.830 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.110; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 70.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB025328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9792, 0.9900 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUAMTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12407 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG8000, 0.1M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.60600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.60600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 LEU A 19 REMARK 465 PRO A 122 REMARK 465 ILE A 123 REMARK 465 LEU A 124 REMARK 465 GLY A 125 REMARK 465 TYR A 126 REMARK 465 SER A 127 REMARK 465 GLN A 128 REMARK 465 ASN A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ILE A 132 REMARK 465 ILE A 133 REMARK 465 GLU A 134 REMARK 465 ALA A 135 REMARK 465 PRO A 136 REMARK 465 PRO A 137 REMARK 465 LYS A 138 REMARK 465 ILE A 139 REMARK 465 LEU A 237 REMARK 465 GLU A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MSE B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 PRO B 122 REMARK 465 ILE B 123 REMARK 465 LEU B 124 REMARK 465 GLY B 125 REMARK 465 TYR B 126 REMARK 465 SER B 127 REMARK 465 GLN B 128 REMARK 465 ASN B 129 REMARK 465 GLY B 130 REMARK 465 SER B 131 REMARK 465 ILE B 132 REMARK 465 ILE B 133 REMARK 465 GLU B 134 REMARK 465 ALA B 135 REMARK 465 PRO B 136 REMARK 465 PRO B 137 REMARK 465 LYS B 138 REMARK 465 ILE B 139 REMARK 465 ASP B 236 REMARK 465 LEU B 237 REMARK 465 GLU B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 28 CG CD OE1 NE2 REMARK 480 LYS A 30 CG CD CE NZ REMARK 480 GLN A 32 CG CD OE1 NE2 REMARK 480 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 72 CG OD1 ND2 REMARK 480 LYS A 81 CG CD CE NZ REMARK 480 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 147 CG1 CG2 CD1 REMARK 480 GLU A 162 CG CD OE1 OE2 REMARK 480 ILE A 165 CG1 CG2 CD1 REMARK 480 ASN A 206 CG OD1 ND2 REMARK 480 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 216 CG OD1 ND2 REMARK 480 PHE A 226 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS A 227 CG CD CE NZ REMARK 480 LYS A 229 CG CD CE NZ REMARK 480 LEU A 230 CG CD1 CD2 REMARK 480 ILE A 231 CG1 CG2 CD1 REMARK 480 TYR A 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ILE A 234 CG1 CG2 CD1 REMARK 480 THR A 235 OG1 CG2 REMARK 480 ASP A 236 CG OD1 OD2 REMARK 480 ILE B 18 CG1 CG2 CD1 REMARK 480 GLN B 28 CG CD OE1 NE2 REMARK 480 LYS B 30 CG CD CE NZ REMARK 480 GLN B 32 CG CD OE1 NE2 REMARK 480 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 72 CG OD1 ND2 REMARK 480 LYS B 81 CG CD CE NZ REMARK 480 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 480 ILE B 147 CG1 CG2 CD1 REMARK 480 GLU B 162 CG CD OE1 OE2 REMARK 480 ILE B 165 CG1 CG2 CD1 REMARK 480 ASN B 206 CG OD1 ND2 REMARK 480 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 216 CG OD1 ND2 REMARK 480 PHE B 226 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 227 CG CD CE NZ REMARK 480 LYS B 229 CG CD CE NZ REMARK 480 LEU B 230 CG CD1 CD2 REMARK 480 ILE B 231 CG1 CG2 CD1 REMARK 480 TYR B 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ILE B 234 CG1 CG2 CD1 REMARK 480 THR B 235 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 63 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO A 63 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO B 63 C - N - CA ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 86.57 -158.45 REMARK 500 ALA A 55 172.61 176.36 REMARK 500 ARG A 66 100.49 20.87 REMARK 500 ASP A 68 103.59 -175.33 REMARK 500 ALA A 69 -24.37 -143.25 REMARK 500 SER A 97 -101.91 50.02 REMARK 500 ASN A 141 48.51 -67.89 REMARK 500 TYR A 142 -59.31 -162.16 REMARK 500 LYS A 167 18.65 -150.20 REMARK 500 ASP A 168 65.57 31.53 REMARK 500 PHE A 214 50.40 -105.81 REMARK 500 ILE A 231 -8.09 -43.70 REMARK 500 THR A 235 13.85 -69.37 REMARK 500 LEU B 19 161.42 164.54 REMARK 500 LYS B 21 -168.51 -165.61 REMARK 500 ILE B 29 88.07 -154.15 REMARK 500 ALA B 55 179.99 175.84 REMARK 500 ARG B 66 76.95 -42.20 REMARK 500 ALA B 67 -160.66 -59.80 REMARK 500 ASP B 68 -14.63 -153.90 REMARK 500 SER B 97 -123.37 57.52 REMARK 500 ASN B 157 107.14 -54.97 REMARK 500 LYS B 167 11.25 -141.89 REMARK 500 PHE B 214 49.05 -108.22 REMARK 500 SER B 225 -179.99 -68.85 REMARK 500 ILE B 231 -3.52 -47.92 REMARK 500 SER B 232 -94.34 -92.43 REMARK 500 TYR B 233 -38.98 -26.35 REMARK 500 ILE B 234 28.93 -71.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 87 0.08 SIDE CHAIN REMARK 500 TYR A 89 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2DEO A 16 236 UNP O59179 O59179_PYRHO 16 236 DBREF 2DEO B 16 236 UNP O59179 O59179_PYRHO 16 236 SEQADV 2DEO MSE A 15 UNP O59179 INITIATING METHIONINE SEQADV 2DEO MSE A 70 UNP O59179 MET 70 MODIFIED RESIDUE SEQADV 2DEO MSE A 71 UNP O59179 MET 71 MODIFIED RESIDUE SEQADV 2DEO MSE A 111 UNP O59179 MET 111 MODIFIED RESIDUE SEQADV 2DEO MSE A 199 UNP O59179 MET 199 MODIFIED RESIDUE SEQADV 2DEO LEU A 237 UNP O59179 CLONING ARTIFACT SEQADV 2DEO GLU A 238 UNP O59179 CLONING ARTIFACT SEQADV 2DEO HIS A 239 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS A 240 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS A 241 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS A 242 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS A 243 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS A 244 UNP O59179 EXPRESSION TAG SEQADV 2DEO MSE B 15 UNP O59179 INITIATING METHIONINE SEQADV 2DEO MSE B 70 UNP O59179 MET 70 MODIFIED RESIDUE SEQADV 2DEO MSE B 71 UNP O59179 MET 71 MODIFIED RESIDUE SEQADV 2DEO MSE B 111 UNP O59179 MET 111 MODIFIED RESIDUE SEQADV 2DEO MSE B 199 UNP O59179 MET 199 MODIFIED RESIDUE SEQADV 2DEO LEU B 237 UNP O59179 CLONING ARTIFACT SEQADV 2DEO GLU B 238 UNP O59179 CLONING ARTIFACT SEQADV 2DEO HIS B 239 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS B 240 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS B 241 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS B 242 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS B 243 UNP O59179 EXPRESSION TAG SEQADV 2DEO HIS B 244 UNP O59179 EXPRESSION TAG SEQRES 1 A 230 MSE SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 A 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 A 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 A 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 A 230 ALA ASP ALA MSE MSE ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 A 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 A 230 ALA SER ALA ALA SER ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 A 230 SER HIS LEU ILE ALA MSE ALA PRO GLY THR SER ILE GLY SEQRES 9 A 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 A 230 ILE ILE GLU ALA PRO PRO LYS ILE THR ASN TYR PHE ILE SEQRES 11 A 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 A 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 A 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 A 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 A 230 ASN GLY MSE LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 A 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 A 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 A 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 230 MSE SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 B 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 B 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 B 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 B 230 ALA ASP ALA MSE MSE ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 B 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 B 230 ALA SER ALA ALA SER ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 B 230 SER HIS LEU ILE ALA MSE ALA PRO GLY THR SER ILE GLY SEQRES 9 B 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 B 230 ILE ILE GLU ALA PRO PRO LYS ILE THR ASN TYR PHE ILE SEQRES 11 B 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 B 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 B 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 B 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 B 230 ASN GLY MSE LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 B 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 B 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 B 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2DEO MSE A 70 MET SELENOMETHIONINE MODRES 2DEO MSE A 71 MET SELENOMETHIONINE MODRES 2DEO MSE A 111 MET SELENOMETHIONINE MODRES 2DEO MSE A 199 MET SELENOMETHIONINE MODRES 2DEO MSE B 70 MET SELENOMETHIONINE MODRES 2DEO MSE B 71 MET SELENOMETHIONINE MODRES 2DEO MSE B 111 MET SELENOMETHIONINE MODRES 2DEO MSE B 199 MET SELENOMETHIONINE HET MSE A 70 8 HET MSE A 71 8 HET MSE A 111 8 HET MSE A 199 8 HET MSE B 70 8 HET MSE B 71 8 HET MSE B 111 8 HET MSE B 199 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *32(H2 O) HELIX 1 1 THR A 34 ASP A 51 1 18 HELIX 2 2 ALA A 69 GLN A 79 1 11 HELIX 3 3 SER A 97 GLY A 105 1 9 HELIX 4 4 TYR A 142 GLU A 153 1 12 HELIX 5 5 ASN A 157 LYS A 167 1 11 HELIX 6 6 THR A 172 TYR A 179 1 8 HELIX 7 7 ASP A 188 ASN A 197 1 10 HELIX 8 8 SER A 225 THR A 235 1 11 HELIX 9 9 THR B 34 ASP B 51 1 18 HELIX 10 10 ASP B 68 GLN B 79 1 12 HELIX 11 11 SER B 97 GLY B 105 1 9 HELIX 12 12 THR B 140 GLU B 153 1 14 HELIX 13 13 ASN B 157 ASP B 168 1 12 HELIX 14 14 THR B 172 TYR B 179 1 8 HELIX 15 15 ASP B 188 ASN B 197 1 10 HELIX 16 16 SER B 225 ILE B 234 1 10 SHEET 1 A 6 VAL A 184 VAL A 185 0 SHEET 2 A 6 LEU A 108 MSE A 111 1 N MSE A 111 O VAL A 184 SHEET 3 A 6 VAL A 84 VAL A 88 1 N VAL A 88 O ALA A 110 SHEET 4 A 6 ALA A 55 ASP A 61 1 N LEU A 60 O TYR A 87 SHEET 5 A 6 ASN A 22 LYS A 30 1 N ALA A 27 O GLU A 59 SHEET 6 A 6 VAL A 217 LEU A 222 1 O ARG A 220 N VAL A 24 SHEET 1 B 3 SER A 94 ALA A 96 0 SHEET 2 B 3 SER A 116 GLY A 118 1 O SER A 116 N ALA A 95 SHEET 3 B 3 SER A 170 LEU A 171 -1 O LEU A 171 N ILE A 117 SHEET 1 C 6 VAL B 184 VAL B 185 0 SHEET 2 C 6 LEU B 108 MSE B 111 1 N MSE B 111 O VAL B 184 SHEET 3 C 6 VAL B 84 VAL B 88 1 N ILE B 86 O LEU B 108 SHEET 4 C 6 ALA B 55 ASP B 61 1 N LEU B 60 O TYR B 87 SHEET 5 C 6 ASN B 22 LYS B 30 1 N TYR B 25 O ILE B 57 SHEET 6 C 6 VAL B 217 TYR B 221 1 O GLU B 218 N ASN B 22 SHEET 1 D 3 SER B 94 ALA B 96 0 SHEET 2 D 3 SER B 116 GLY B 118 1 O GLY B 118 N ALA B 95 SHEET 3 D 3 SER B 170 LEU B 171 -1 O LEU B 171 N ILE B 117 LINK C ALA A 69 N MSE A 70 1555 1555 1.36 LINK C MSE A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N ASN A 72 1555 1555 1.34 LINK C ALA A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N ALA A 112 1555 1555 1.32 LINK C GLY A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N LYS A 200 1555 1555 1.32 LINK C ALA B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N ASN B 72 1555 1555 1.33 LINK C ALA B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N ALA B 112 1555 1555 1.33 LINK C GLY B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N LYS B 200 1555 1555 1.33 CISPEP 1 TYR A 89 PRO A 90 0 0.11 CISPEP 2 TYR B 89 PRO B 90 0 0.30 CRYST1 103.212 108.400 59.342 90.00 110.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009689 0.000000 0.003538 0.00000 SCALE2 0.000000 0.009225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017940 0.00000