data_2DES # _entry.id 2DES # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DES pdb_00002des 10.2210/pdb2des/pdb RCSB DDF041 ? ? WWPDB D_1000177991 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DES _pdbx_database_status.recvd_initial_deposition_date 1993-03-16 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cirilli, M.' 1 'Bachechi, F.' 2 'Ughetto, G.' 3 'Colonna, F.P.' 4 'Capobianco, M.L.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Interactions between morpholinyl anthracyclines and DNA. The crystal structure of a morpholino doxorubicin bound to d(CGTACG).' J.Mol.Biol. 230 878 889 1993 JMOBAK UK 0022-2836 0070 ? 8478940 10.1006/jmbi.1993.1208 1 ;Interactions Between an Anthracycline Antibiotic and DNA: Molecular Structure of Daunomycin Complexed to d(CpGpTpApCpG) at 1.2-Angstroms Resolution ; Biochemistry 26 1152 1163 1987 BICHAW US 0006-2960 0033 ? ? ? 2 'Structure of 11-Deoxydaunomycin Bound to DNA Containing a Phosphorothioate' J.Mol.Biol. 215 313 320 1990 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cirilli, M.' 1 ? primary 'Bachechi, F.' 2 ? primary 'Ughetto, G.' 3 ? primary 'Colonna, F.P.' 4 ? primary 'Capobianco, M.L.' 5 ? 1 'Wang, A.-H.J.' 6 ? 1 'Ughetto, G.' 7 ? 1 'Quigley, G.J.' 8 ? 1 'Rich, A.' 9 ? 2 'Williams, L.D.' 10 ? 2 'Egli, M.' 11 ? 2 'Ughetto, G.' 12 ? 2 'Van Der Marel, G.A.' 13 ? 2 'Van Boom, J.H.' 14 ? 2 'Quigley, G.J.' 15 ? 2 'Wang, A.H.-J.' 16 ? 2 'Rich, A.' 17 ? 2 'Frederick, C.A.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') ; 1809.217 2 ? ? ? ? 2 non-polymer syn "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" 643.635 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 79 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" DMM 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DMM non-polymer . "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" ? 'C32 H37 N O13' 643.635 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMM 1 13 13 DMM DMM A . D 2 DMM 1 14 14 DMM DMM A . E 3 NA 1 17 17 NA NA A . F 4 MG 1 15 15 MG MG B . G 3 NA 1 16 16 NA NA B . H 5 HOH 1 18 18 HOH HOH A . H 5 HOH 2 20 20 HOH HOH A . H 5 HOH 3 22 22 HOH HOH A . H 5 HOH 4 23 23 HOH HOH A . H 5 HOH 5 24 24 HOH HOH A . H 5 HOH 6 25 25 HOH HOH A . H 5 HOH 7 26 26 HOH HOH A . H 5 HOH 8 27 27 HOH HOH A . H 5 HOH 9 29 29 HOH HOH A . H 5 HOH 10 31 31 HOH HOH A . H 5 HOH 11 36 36 HOH HOH A . H 5 HOH 12 37 37 HOH HOH A . H 5 HOH 13 40 40 HOH HOH A . H 5 HOH 14 42 42 HOH HOH A . H 5 HOH 15 43 43 HOH HOH A . H 5 HOH 16 45 45 HOH HOH A . H 5 HOH 17 47 47 HOH HOH A . H 5 HOH 18 48 48 HOH HOH A . H 5 HOH 19 55 55 HOH HOH A . H 5 HOH 20 57 57 HOH HOH A . H 5 HOH 21 60 60 HOH HOH A . H 5 HOH 22 63 63 HOH HOH A . H 5 HOH 23 64 64 HOH HOH A . H 5 HOH 24 67 67 HOH HOH A . H 5 HOH 25 69 69 HOH HOH A . H 5 HOH 26 70 70 HOH HOH A . H 5 HOH 27 72 72 HOH HOH A . H 5 HOH 28 73 73 HOH HOH A . H 5 HOH 29 74 74 HOH HOH A . H 5 HOH 30 75 75 HOH HOH A . H 5 HOH 31 77 77 HOH HOH A . H 5 HOH 32 78 78 HOH HOH A . H 5 HOH 33 79 79 HOH HOH A . H 5 HOH 34 80 80 HOH HOH A . H 5 HOH 35 81 81 HOH HOH A . H 5 HOH 36 84 84 HOH HOH A . H 5 HOH 37 85 85 HOH HOH A . H 5 HOH 38 86 86 HOH HOH A . H 5 HOH 39 87 87 HOH HOH A . H 5 HOH 40 88 88 HOH HOH A . H 5 HOH 41 89 89 HOH HOH A . H 5 HOH 42 90 90 HOH HOH A . H 5 HOH 43 91 91 HOH HOH A . H 5 HOH 44 92 92 HOH HOH A . H 5 HOH 45 93 93 HOH HOH A . H 5 HOH 46 95 95 HOH HOH A . H 5 HOH 47 96 96 HOH HOH A . I 5 HOH 1 19 19 HOH HOH B . I 5 HOH 2 21 21 HOH HOH B . I 5 HOH 3 28 28 HOH HOH B . I 5 HOH 4 30 30 HOH HOH B . I 5 HOH 5 32 32 HOH HOH B . I 5 HOH 6 33 33 HOH HOH B . I 5 HOH 7 34 34 HOH HOH B . I 5 HOH 8 35 35 HOH HOH B . I 5 HOH 9 38 38 HOH HOH B . I 5 HOH 10 39 39 HOH HOH B . I 5 HOH 11 41 41 HOH HOH B . I 5 HOH 12 44 44 HOH HOH B . I 5 HOH 13 46 46 HOH HOH B . I 5 HOH 14 49 49 HOH HOH B . I 5 HOH 15 50 50 HOH HOH B . I 5 HOH 16 51 51 HOH HOH B . I 5 HOH 17 52 52 HOH HOH B . I 5 HOH 18 53 53 HOH HOH B . I 5 HOH 19 54 54 HOH HOH B . I 5 HOH 20 56 56 HOH HOH B . I 5 HOH 21 58 58 HOH HOH B . I 5 HOH 22 59 59 HOH HOH B . I 5 HOH 23 61 61 HOH HOH B . I 5 HOH 24 62 62 HOH HOH B . I 5 HOH 25 65 65 HOH HOH B . I 5 HOH 26 66 66 HOH HOH B . I 5 HOH 27 68 68 HOH HOH B . I 5 HOH 28 71 71 HOH HOH B . I 5 HOH 29 76 76 HOH HOH B . I 5 HOH 30 82 82 HOH HOH B . I 5 HOH 31 83 83 HOH HOH B . I 5 HOH 32 94 94 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 2DES _cell.length_a 18.010 _cell.length_b 18.830 _cell.length_c 26.750 _cell.angle_alpha 92.60 _cell.angle_beta 100.50 _cell.angle_gamma 94.90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DES _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2DES _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.82 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 5.50 _exptl_crystal_grow.pdbx_details 'pH 5.50, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE_HCL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SYNTEX P21' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2DES _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 3988 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2DES _refine.ls_number_reflns_obs 3588 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1920000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 95 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 414 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 2DES _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DES _struct.title 'INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DES _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DES _struct_ref.pdbx_db_accession 2DES _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DES A 1 ? 6 ? 2DES 1 ? 6 ? 1 6 2 1 2DES B 1 ? 6 ? 2DES 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 E NA . NA ? ? A DG 6 A NA 17 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc2 metalc ? ? C DMM . O4 ? ? ? 1_555 G NA . NA ? ? A DMM 13 B NA 16 1_555 ? ? ? ? ? ? ? 2.515 ? ? metalc3 metalc ? ? D DMM . O4 ? ? ? 1_555 E NA . NA ? ? A DMM 14 A NA 17 1_555 ? ? ? ? ? ? ? 2.966 ? ? metalc4 metalc ? ? D DMM . O6 ? ? ? 1_555 E NA . NA ? ? A DMM 14 A NA 17 1_555 ? ? ? ? ? ? ? 2.975 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 81 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 85 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 87 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 48 B MG 15 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc9 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 57 B MG 15 1_555 ? ? ? ? ? ? ? 1.960 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 15 B HOH 49 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc11 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 15 B HOH 50 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc12 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 15 B HOH 51 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 15 B HOH 58 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc14 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 16 B HOH 46 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc15 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 16 B HOH 59 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc16 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 16 B HOH 65 1_555 ? ? ? ? ? ? ? 2.783 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O4 ? D DMM . ? A DMM 14 ? 1_555 124.7 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O6 ? D DMM . ? A DMM 14 ? 1_555 74.3 ? 3 O4 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O6 ? D DMM . ? A DMM 14 ? 1_555 51.4 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 151.6 ? 5 O4 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 81.2 ? 6 O6 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 132.6 ? 7 N7 ? A DG 6 ? A DG 6 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 96.0 ? 8 O4 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 115.2 ? 9 O6 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 116.7 ? 10 O ? H HOH . ? A HOH 81 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 80.1 ? 11 N7 ? A DG 6 ? A DG 6 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 65.6 ? 12 O4 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 142.8 ? 13 O6 ? D DMM . ? A DMM 14 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 129.7 ? 14 O ? H HOH . ? A HOH 81 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 86.9 ? 15 O ? H HOH . ? A HOH 85 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 97.0 ? 16 O4 ? C DMM . ? A DMM 13 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 46 ? 1_555 94.3 ? 17 O4 ? C DMM . ? A DMM 13 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 59 ? 1_555 135.8 ? 18 O ? I HOH . ? B HOH 46 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 59 ? 1_555 129.1 ? 19 O4 ? C DMM . ? A DMM 13 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 65 ? 1_555 113.2 ? 20 O ? I HOH . ? B HOH 46 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 65 ? 1_555 90.9 ? 21 O ? I HOH . ? B HOH 59 ? 1_555 NA ? G NA . ? B NA 16 ? 1_555 O ? I HOH . ? B HOH 65 ? 1_555 65.0 ? 22 O ? H HOH . ? A HOH 48 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? A HOH 57 ? 1_555 89.2 ? 23 O ? H HOH . ? A HOH 48 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 49 ? 1_555 92.4 ? 24 O ? H HOH . ? A HOH 57 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 49 ? 1_555 89.6 ? 25 O ? H HOH . ? A HOH 48 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 97.8 ? 26 O ? H HOH . ? A HOH 57 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 170.6 ? 27 O ? I HOH . ? B HOH 49 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 50 ? 1_555 83.8 ? 28 O ? H HOH . ? A HOH 48 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 91.2 ? 29 O ? H HOH . ? A HOH 57 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 94.4 ? 30 O ? I HOH . ? B HOH 49 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 174.7 ? 31 O ? I HOH . ? B HOH 50 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 91.8 ? 32 O ? H HOH . ? A HOH 48 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 58 ? 1_555 175.9 ? 33 O ? H HOH . ? A HOH 57 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 58 ? 1_555 93.3 ? 34 O ? I HOH . ? B HOH 49 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 58 ? 1_555 84.4 ? 35 O ? I HOH . ? B HOH 50 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 58 ? 1_555 79.4 ? 36 O ? I HOH . ? B HOH 51 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? I HOH . ? B HOH 58 ? 1_555 91.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DMM 13 ? 17 'BINDING SITE FOR RESIDUE DMM A 13' AC2 Software A DMM 14 ? 14 'BINDING SITE FOR RESIDUE DMM A 14' AC3 Software B MG 15 ? 6 'BINDING SITE FOR RESIDUE MG B 15' AC4 Software B NA 16 ? 5 'BINDING SITE FOR RESIDUE NA B 16' AC5 Software A NA 17 ? 5 'BINDING SITE FOR RESIDUE NA A 17' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 17 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 17 DT A 3 ? DT A 3 . ? 1_555 ? 4 AC1 17 DT A 3 ? DT A 3 . ? 1_455 ? 5 AC1 17 DA A 4 ? DA A 4 . ? 1_555 ? 6 AC1 17 DA A 4 ? DA A 4 . ? 1_455 ? 7 AC1 17 DMM D . ? DMM A 14 . ? 1_555 ? 8 AC1 17 HOH H . ? HOH A 23 . ? 1_555 ? 9 AC1 17 HOH H . ? HOH A 25 . ? 1_555 ? 10 AC1 17 HOH H . ? HOH A 27 . ? 1_555 ? 11 AC1 17 HOH H . ? HOH A 60 . ? 1_655 ? 12 AC1 17 HOH H . ? HOH A 64 . ? 1_655 ? 13 AC1 17 HOH H . ? HOH A 64 . ? 1_555 ? 14 AC1 17 DA B 4 ? DA B 10 . ? 1_555 ? 15 AC1 17 DC B 5 ? DC B 11 . ? 1_555 ? 16 AC1 17 DG B 6 ? DG B 12 . ? 1_555 ? 17 AC1 17 NA G . ? NA B 16 . ? 1_555 ? 18 AC2 14 DA A 4 ? DA A 4 . ? 1_555 ? 19 AC2 14 DC A 5 ? DC A 5 . ? 1_555 ? 20 AC2 14 DG A 6 ? DG A 6 . ? 1_555 ? 21 AC2 14 DMM C . ? DMM A 13 . ? 1_555 ? 22 AC2 14 NA E . ? NA A 17 . ? 1_555 ? 23 AC2 14 HOH H . ? HOH A 37 . ? 1_555 ? 24 AC2 14 HOH H . ? HOH A 40 . ? 1_555 ? 25 AC2 14 HOH H . ? HOH A 48 . ? 1_555 ? 26 AC2 14 HOH H . ? HOH A 93 . ? 1_555 ? 27 AC2 14 DC B 1 ? DC B 7 . ? 1_555 ? 28 AC2 14 DG B 2 ? DG B 8 . ? 1_555 ? 29 AC2 14 DT B 3 ? DT B 9 . ? 1_655 ? 30 AC2 14 DT B 3 ? DT B 9 . ? 1_555 ? 31 AC2 14 DA B 4 ? DA B 10 . ? 1_555 ? 32 AC3 6 HOH H . ? HOH A 48 . ? 1_555 ? 33 AC3 6 HOH H . ? HOH A 57 . ? 1_555 ? 34 AC3 6 HOH I . ? HOH B 49 . ? 1_555 ? 35 AC3 6 HOH I . ? HOH B 50 . ? 1_555 ? 36 AC3 6 HOH I . ? HOH B 51 . ? 1_555 ? 37 AC3 6 HOH I . ? HOH B 58 . ? 1_555 ? 38 AC4 5 DMM C . ? DMM A 13 . ? 1_555 ? 39 AC4 5 DG B 6 ? DG B 12 . ? 1_555 ? 40 AC4 5 HOH I . ? HOH B 46 . ? 1_555 ? 41 AC4 5 HOH I . ? HOH B 59 . ? 1_555 ? 42 AC4 5 HOH I . ? HOH B 65 . ? 1_555 ? 43 AC5 5 DG A 6 ? DG A 6 . ? 1_555 ? 44 AC5 5 DMM D . ? DMM A 14 . ? 1_555 ? 45 AC5 5 HOH H . ? HOH A 81 . ? 1_555 ? 46 AC5 5 HOH H . ? HOH A 85 . ? 1_555 ? 47 AC5 5 HOH H . ? HOH A 87 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 19 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 35 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 A DA 4 ? ? 1_555 O B HOH 19 ? ? 1_655 1.56 2 1 OP2 B DA 10 ? ? 1_555 O A HOH 18 ? ? 1_455 1.98 3 1 P A DA 4 ? ? 1_555 O B HOH 19 ? ? 1_655 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.365 1.419 -0.054 0.006 N 2 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.380 1.419 -0.039 0.006 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.332 1.391 -0.059 0.007 N 4 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.232 1.341 -0.109 0.010 N 5 1 "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 1.595 1.519 0.076 0.010 N 6 1 C5 A DA 4 ? ? C6 A DA 4 ? ? 1.462 1.406 0.056 0.009 N 7 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.597 1.529 0.068 0.010 N 8 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.620 1.519 0.101 0.010 N 9 1 "O3'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.353 1.419 -0.066 0.006 N 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.495 1.420 0.075 0.011 N 11 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.362 1.419 -0.057 0.006 N 12 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.348 1.391 -0.043 0.007 N 13 1 C5 A DG 6 ? ? N7 A DG 6 ? ? 1.347 1.388 -0.041 0.006 N 14 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.319 1.374 -0.055 0.007 N 15 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.234 1.341 -0.107 0.010 N 16 1 "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.606 1.529 0.077 0.010 N 17 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.382 1.335 0.047 0.007 N 18 1 P B DG 8 ? ? OP2 B DG 8 ? ? 1.381 1.485 -0.104 0.017 N 19 1 P B DG 8 ? ? "O5'" B DG 8 ? ? 1.675 1.593 0.082 0.010 N 20 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.602 1.519 0.083 0.010 N 21 1 "O3'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.374 1.419 -0.045 0.006 N 22 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.278 1.391 -0.113 0.007 N 23 1 C5 B DG 8 ? ? N7 B DG 8 ? ? 1.326 1.388 -0.062 0.006 N 24 1 C8 B DG 8 ? ? N9 B DG 8 ? ? 1.282 1.374 -0.092 0.007 N 25 1 N9 B DG 8 ? ? C4 B DG 8 ? ? 1.434 1.375 0.059 0.008 N 26 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.221 1.341 -0.120 0.010 N 27 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? 1.564 1.512 0.052 0.007 N 28 1 "O3'" B DT 9 ? ? "C3'" B DT 9 ? ? 1.338 1.419 -0.081 0.006 N 29 1 "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? 1.600 1.529 0.071 0.010 N 30 1 "C2'" B DA 10 ? ? "C1'" B DA 10 ? ? 1.580 1.519 0.061 0.010 N 31 1 "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 1.371 1.446 -0.075 0.010 N 32 1 "O3'" B DA 10 ? ? "C3'" B DA 10 ? ? 1.364 1.419 -0.055 0.006 N 33 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.592 1.519 0.073 0.010 N 34 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.407 1.335 0.072 0.007 N 35 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.373 1.425 -0.052 0.008 N 36 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.438 1.509 -0.071 0.011 N 37 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.598 1.529 0.069 0.010 N 38 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.308 1.391 -0.083 0.007 N 39 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.351 1.388 -0.037 0.006 N 40 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.331 1.374 -0.043 0.007 N 41 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.245 1.341 -0.096 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 102.52 109.40 -6.88 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 100.84 104.50 -3.66 0.40 N 3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 126.55 119.90 6.65 0.50 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 114.64 121.90 -7.26 0.40 N 5 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.59 118.00 4.59 0.70 N 6 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 122.97 110.70 12.27 1.20 N 7 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 93.12 105.70 -12.58 0.90 N 8 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 98.68 109.40 -10.72 0.80 N 9 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.49 104.50 -3.01 0.40 N 10 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.37 102.40 -5.03 0.80 N 11 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.70 108.30 7.40 0.30 N 12 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.12 125.10 -6.98 0.60 N 13 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.51 123.90 3.61 0.60 N 14 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 114.45 118.80 -4.35 0.60 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 119.78 111.50 8.28 0.50 N 16 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 109.87 113.10 -3.23 0.50 N 17 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 109.29 106.40 2.89 0.40 N 18 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 135.11 130.40 4.71 0.60 N 19 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 121.84 116.20 5.64 0.90 N 20 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 110.59 119.90 -9.31 0.70 N 21 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.08 128.60 -5.52 0.60 N 22 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 129.77 119.70 10.07 1.20 Y 23 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 118.42 110.70 7.72 1.20 N 24 1 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? 94.01 109.70 -15.69 2.50 N 25 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? "C2'" A DT 3 ? ? 113.88 106.80 7.08 0.50 N 26 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 100.95 108.00 -7.05 0.70 N 27 1 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.97 119.00 3.97 0.60 N 28 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 125.27 110.70 14.57 1.20 N 29 1 P A DA 4 ? ? "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? 133.10 120.90 12.20 1.60 N 30 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 96.79 105.90 -9.11 0.80 N 31 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.14 108.00 -4.86 0.70 N 32 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 126.68 118.60 8.08 0.60 N 33 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 122.17 129.30 -7.13 0.50 N 34 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 114.63 117.70 -3.07 0.50 N 35 1 C4 A DA 4 ? ? C5 A DA 4 ? ? N7 A DA 4 ? ? 114.49 110.70 3.79 0.50 N 36 1 N9 A DA 4 ? ? C4 A DA 4 ? ? C5 A DA 4 ? ? 102.92 105.80 -2.88 0.40 N 37 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 123.23 118.60 4.63 0.60 N 38 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 118.13 110.70 7.43 1.20 N 39 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.23 110.10 -6.87 1.00 N 40 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.45 102.40 -4.95 0.80 N 41 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.42 108.30 5.12 0.30 N 42 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 117.31 120.30 -2.99 0.40 N 43 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 126.43 119.90 6.53 0.50 N 44 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 114.06 121.90 -7.84 0.40 N 45 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 124.84 121.00 3.84 0.50 N 46 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 124.31 118.00 6.31 0.70 N 47 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 134.45 119.70 14.75 1.20 Y 48 1 N9 A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 123.46 114.30 9.16 1.40 N 49 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.25 108.00 -5.75 0.70 N 50 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 116.98 125.10 -8.12 0.60 N 51 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 131.96 123.90 8.06 0.60 N 52 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 107.80 111.90 -4.10 0.50 N 53 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 117.70 111.50 6.20 0.50 N 54 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 124.48 116.20 8.28 0.90 N 55 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 103.41 119.90 -16.49 0.70 N 56 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 122.70 128.60 -5.90 0.60 N 57 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 95.92 109.40 -13.48 0.80 N 58 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 100.63 104.50 -3.87 0.40 N 59 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 124.18 115.70 8.48 1.20 N 60 1 "C1'" B DC 7 ? ? "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 114.62 110.30 4.32 0.70 N 61 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 102.50 108.00 -5.50 0.70 N 62 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 126.90 118.90 8.00 0.60 N 63 1 N3 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 115.61 121.90 -6.29 0.70 N 64 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 124.71 120.20 4.51 0.70 N 65 1 OP1 B DG 8 ? ? P B DG 8 ? ? OP2 B DG 8 ? ? 132.95 119.60 13.35 1.50 N 66 1 "O5'" B DG 8 ? ? P B DG 8 ? ? OP2 B DG 8 ? ? 97.36 105.70 -8.34 0.90 N 67 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 102.50 109.40 -6.90 0.80 N 68 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 114.94 110.30 4.64 0.70 N 69 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 97.19 102.40 -5.21 0.80 N 70 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 124.83 108.30 16.53 0.30 N 71 1 C4 B DG 8 ? ? C5 B DG 8 ? ? C6 B DG 8 ? ? 115.07 118.80 -3.73 0.60 N 72 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 118.89 111.50 7.39 0.50 N 73 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 126.19 116.20 9.99 0.90 N 74 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 107.38 119.90 -12.52 0.70 N 75 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 122.70 128.60 -5.90 0.60 N 76 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DT 9 ? ? 142.67 119.70 22.97 1.20 Y 77 1 "O3'" B DG 8 ? ? P B DT 9 ? ? "O5'" B DT 9 ? ? 115.78 104.00 11.78 1.90 Y 78 1 "O3'" B DG 8 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 91.65 105.20 -13.55 2.20 Y 79 1 "O5'" B DT 9 ? ? P B DT 9 ? ? OP1 B DT 9 ? ? 94.19 105.70 -11.51 0.90 N 80 1 "O5'" B DT 9 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 122.52 110.70 11.82 1.20 N 81 1 P B DT 9 ? ? "O5'" B DT 9 ? ? "C5'" B DT 9 ? ? 102.28 120.90 -18.62 1.60 N 82 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 99.03 114.10 -15.07 1.80 N 83 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 98.89 108.00 -9.11 0.70 N 84 1 "C3'" B DT 9 ? ? "O3'" B DT 9 ? ? P B DA 10 ? ? 112.11 119.70 -7.59 1.20 Y 85 1 "O3'" B DT 9 ? ? P B DA 10 ? ? "O5'" B DA 10 ? ? 116.87 104.00 12.87 1.90 Y 86 1 P B DA 10 ? ? "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? 106.78 120.90 -14.12 1.60 N 87 1 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 115.03 110.30 4.73 0.70 N 88 1 "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? "C2'" B DA 10 ? ? 108.59 103.10 5.49 0.90 N 89 1 "O5'" B DC 11 ? ? P B DC 11 ? ? OP1 B DC 11 ? ? 98.04 105.70 -7.66 0.90 N 90 1 "O5'" B DC 11 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 129.78 110.70 19.08 1.20 N 91 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 95.75 102.40 -6.65 0.80 N 92 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 99.58 105.90 -6.32 0.80 N 93 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 114.10 108.30 5.80 0.30 N 94 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 124.02 119.90 4.12 0.50 N 95 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 115.94 121.90 -5.96 0.40 N 96 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 120.78 117.40 3.38 0.50 N 97 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.59 118.90 3.69 0.60 N 98 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 126.78 120.20 6.58 0.70 N 99 1 "O3'" B DC 11 ? ? P B DG 12 ? ? "O5'" B DG 12 ? ? 117.27 104.00 13.27 1.90 Y 100 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP1 B DG 12 ? ? 97.06 105.70 -8.64 0.90 N 101 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 121.10 110.70 10.40 1.20 N 102 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 100.24 104.50 -4.26 0.40 N 103 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 94.02 102.20 -8.18 0.70 N 104 1 C4 B DG 12 ? ? C5 B DG 12 ? ? C6 B DG 12 ? ? 114.34 118.80 -4.46 0.60 N 105 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 118.76 111.50 7.26 0.50 N 106 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 102.49 105.40 -2.91 0.40 N 107 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 130.81 126.00 4.81 0.60 N 108 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 114.67 119.90 -5.23 0.70 N 109 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 121.63 128.60 -6.97 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DMM C1 C Y N 108 DMM C2 C Y N 109 DMM C3 C Y N 110 DMM C4 C Y N 111 DMM O4 O N N 112 DMM C5 C Y N 113 DMM C6 C N N 114 DMM O6 O N N 115 DMM C7 C Y N 116 DMM C8 C Y N 117 DMM O8 O N N 118 DMM C9 C Y N 119 DMM C10 C N S 120 DMM O10 O N N 121 DMM C11 C N N 122 DMM C12 C N S 123 DMM O12 O N N 124 DMM C13 C N N 125 DMM O13 O N N 126 DMM C14 C N N 127 DMM O14 O N N 128 DMM C15 C N N 129 DMM C16 C Y N 130 DMM C17 C Y N 131 DMM O17 O N N 132 DMM C18 C Y N 133 DMM C19 C N N 134 DMM O19 O N N 135 DMM C20 C Y N 136 DMM C21 C N N 137 DMM "C1'" C N R 138 DMM "C2'" C N N 139 DMM "C3'" C N S 140 DMM "C4'" C N S 141 DMM "O4'" O N N 142 DMM "C5'" C N S 143 DMM "O5'" O N N 144 DMM "C6'" C N N 145 DMM "N3'" N N N 146 DMM C33 C N N 147 DMM C23 C N S 148 DMM O16 O N N 149 DMM C63 C N N 150 DMM C53 C N N 151 DMM O23 O N N 152 DMM C73 C N N 153 DMM H1 H N N 154 DMM H2 H N N 155 DMM H3 H N N 156 DMM HO8 H N N 157 DMM H10 H N N 158 DMM H111 H N N 159 DMM H112 H N N 160 DMM HO12 H N N 161 DMM H141 H N N 162 DMM H142 H N N 163 DMM HO14 H N N 164 DMM H151 H N N 165 DMM H152 H N N 166 DMM HO17 H N N 167 DMM H211 H N N 168 DMM H212 H N N 169 DMM H213 H N N 170 DMM "H1'" H N N 171 DMM "H2'1" H N N 172 DMM "H2'2" H N N 173 DMM "H3'" H N N 174 DMM "H4'" H N N 175 DMM "HO4'" H N N 176 DMM "H5'" H N N 177 DMM "H6'1" H N N 178 DMM "H6'2" H N N 179 DMM "H6'3" H N N 180 DMM H331 H N N 181 DMM H332 H N N 182 DMM H23 H N N 183 DMM H631 H N N 184 DMM H632 H N N 185 DMM H531 H N N 186 DMM H532 H N N 187 DMM H731 H N N 188 DMM H732 H N N 189 DMM H733 H N N 190 DT OP3 O N N 191 DT P P N N 192 DT OP1 O N N 193 DT OP2 O N N 194 DT "O5'" O N N 195 DT "C5'" C N N 196 DT "C4'" C N R 197 DT "O4'" O N N 198 DT "C3'" C N S 199 DT "O3'" O N N 200 DT "C2'" C N N 201 DT "C1'" C N R 202 DT N1 N N N 203 DT C2 C N N 204 DT O2 O N N 205 DT N3 N N N 206 DT C4 C N N 207 DT O4 O N N 208 DT C5 C N N 209 DT C7 C N N 210 DT C6 C N N 211 DT HOP3 H N N 212 DT HOP2 H N N 213 DT "H5'" H N N 214 DT "H5''" H N N 215 DT "H4'" H N N 216 DT "H3'" H N N 217 DT "HO3'" H N N 218 DT "H2'" H N N 219 DT "H2''" H N N 220 DT "H1'" H N N 221 DT H3 H N N 222 DT H71 H N N 223 DT H72 H N N 224 DT H73 H N N 225 DT H6 H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 MG MG MG N N 230 NA NA NA N N 231 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DMM C1 C2 doub Y N 113 DMM C1 C20 sing Y N 114 DMM C1 H1 sing N N 115 DMM C2 C3 sing Y N 116 DMM C2 H2 sing N N 117 DMM C3 C4 doub Y N 118 DMM C3 H3 sing N N 119 DMM C4 O4 sing N N 120 DMM C4 C5 sing Y N 121 DMM O4 C21 sing N N 122 DMM C5 C6 sing N N 123 DMM C5 C20 doub Y N 124 DMM C6 O6 doub N N 125 DMM C6 C7 sing N N 126 DMM C7 C8 doub Y N 127 DMM C7 C18 sing Y N 128 DMM C8 O8 sing N N 129 DMM C8 C9 sing Y N 130 DMM O8 HO8 sing N N 131 DMM C9 C10 sing N N 132 DMM C9 C16 doub Y N 133 DMM C10 O10 sing N N 134 DMM C10 C11 sing N N 135 DMM C10 H10 sing N N 136 DMM O10 "C1'" sing N N 137 DMM C11 C12 sing N N 138 DMM C11 H111 sing N N 139 DMM C11 H112 sing N N 140 DMM C12 O12 sing N N 141 DMM C12 C13 sing N N 142 DMM C12 C15 sing N N 143 DMM O12 HO12 sing N N 144 DMM C13 O13 doub N N 145 DMM C13 C14 sing N N 146 DMM C14 O14 sing N N 147 DMM C14 H141 sing N N 148 DMM C14 H142 sing N N 149 DMM O14 HO14 sing N N 150 DMM C15 C16 sing N N 151 DMM C15 H151 sing N N 152 DMM C15 H152 sing N N 153 DMM C16 C17 sing Y N 154 DMM C17 O17 sing N N 155 DMM C17 C18 doub Y N 156 DMM O17 HO17 sing N N 157 DMM C18 C19 sing N N 158 DMM C19 O19 doub N N 159 DMM C19 C20 sing N N 160 DMM C21 H211 sing N N 161 DMM C21 H212 sing N N 162 DMM C21 H213 sing N N 163 DMM "C1'" "C2'" sing N N 164 DMM "C1'" "O5'" sing N N 165 DMM "C1'" "H1'" sing N N 166 DMM "C2'" "C3'" sing N N 167 DMM "C2'" "H2'1" sing N N 168 DMM "C2'" "H2'2" sing N N 169 DMM "C3'" "C4'" sing N N 170 DMM "C3'" "N3'" sing N N 171 DMM "C3'" "H3'" sing N N 172 DMM "C4'" "O4'" sing N N 173 DMM "C4'" "C5'" sing N N 174 DMM "C4'" "H4'" sing N N 175 DMM "O4'" "HO4'" sing N N 176 DMM "C5'" "O5'" sing N N 177 DMM "C5'" "C6'" sing N N 178 DMM "C5'" "H5'" sing N N 179 DMM "C6'" "H6'1" sing N N 180 DMM "C6'" "H6'2" sing N N 181 DMM "C6'" "H6'3" sing N N 182 DMM "N3'" C33 sing N N 183 DMM "N3'" C53 sing N N 184 DMM C33 C23 sing N N 185 DMM C33 H331 sing N N 186 DMM C33 H332 sing N N 187 DMM C23 O16 sing N N 188 DMM C23 O23 sing N N 189 DMM C23 H23 sing N N 190 DMM O16 C63 sing N N 191 DMM C63 C53 sing N N 192 DMM C63 H631 sing N N 193 DMM C63 H632 sing N N 194 DMM C53 H531 sing N N 195 DMM C53 H532 sing N N 196 DMM O23 C73 sing N N 197 DMM C73 H731 sing N N 198 DMM C73 H732 sing N N 199 DMM C73 H733 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 # _ndb_struct_conf_na.entry_id 2DES _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 0.356 -0.211 -0.328 11.873 1.497 -1.507 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 -0.233 -0.129 -0.247 -12.101 1.655 3.465 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 -0.241 -0.094 -0.046 -7.803 -13.154 3.932 3 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.182 -0.114 0.130 8.053 -8.611 3.486 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.369 -0.216 -0.107 13.863 3.483 1.693 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 -0.224 -0.170 -0.303 -12.575 1.532 -2.054 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 1.579 1.013 7.062 0.361 -0.222 32.517 1.894 -2.684 7.071 -0.396 -0.645 32.520 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.889 -0.332 3.322 -0.494 -0.552 28.900 -0.540 1.669 3.342 -1.105 0.989 28.909 2 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.067 0.963 3.109 -2.478 9.199 41.552 0.414 -0.154 3.239 12.765 3.439 42.583 3 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.803 -0.381 3.380 1.020 -3.637 31.363 0.004 -1.279 3.425 -6.698 -1.878 31.584 4 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -1.516 1.158 7.044 -0.772 -1.795 32.784 2.708 2.397 7.005 -3.176 1.366 32.841 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 2DES _atom_sites.fract_transf_matrix[1][1] 0.055525 _atom_sites.fract_transf_matrix[1][2] 0.004760 _atom_sites.fract_transf_matrix[1][3] 0.010607 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.053302 _atom_sites.fract_transf_matrix[2][3] 0.003321 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038094 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_