data_2DET # _entry.id 2DET # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DET NDB PR0193 RCSB RCSB025332 WWPDB D_1000025332 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DER 'The same protein/tRNA complex in the initial tRNA binding state' unspecified PDB 2DEU 'The same protein/tRNA complex in the adenylated intermediate state' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DET _pdbx_database_status.recvd_initial_deposition_date 2006-02-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Numata, T.' 1 'Ikeuchi, Y.' 2 'Fukai, S.' 3 'Suzuki, T.' 4 'Nureki, O.' 5 # _citation.id primary _citation.title 'Snapshots of tRNA sulphuration via an adenylated intermediate' _citation.journal_abbrev Nature _citation.journal_volume 442 _citation.page_first 419 _citation.page_last 424 _citation.year 2006 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16871210 _citation.pdbx_database_id_DOI 10.1038/nature04896 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Numata, T.' 1 primary 'Ikeuchi, Y.' 2 primary 'Fukai, S.' 3 primary 'Suzuki, T.' 4 primary 'Nureki, O.' 5 # _cell.entry_id 2DET _cell.length_a 101.537 _cell.length_b 108.015 _cell.length_c 211.239 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DET _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn tRNA 24378.514 1 ? ? ? ? 2 polymer man 'tRNA-specific 2-thiouridylase mnmA' 42411.816 1 2.8.1.- ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RNA sulfuration enzyme MnmA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA C ? 2 'polypeptide(L)' no no ;MRGSHHHHHHGSMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSN KDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDE IGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTV KTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV ; ;MRGSHHHHHHGSMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSN KDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDE IGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTV KTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 C n 1 4 C n 1 5 C n 1 6 C n 1 7 U n 1 8 U n 1 9 C n 1 10 G n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 G n 1 16 A n 1 17 G n 1 18 G n 1 19 C n 1 20 C n 1 21 C n 1 22 A n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 A n 1 28 C n 1 29 C n 1 30 G n 1 31 C n 1 32 C n 1 33 C n 1 34 U n 1 35 U n 1 36 U n 1 37 C n 1 38 A n 1 39 C n 1 40 G n 1 41 G n 1 42 C n 1 43 G n 1 44 G n 1 45 U n 1 46 A n 1 47 A n 1 48 C n 1 49 A n 1 50 G n 1 51 G n 1 52 G n 1 53 G n 1 54 U n 1 55 U n 1 56 C n 1 57 G n 1 58 A n 1 59 A n 1 60 U n 1 61 C n 1 62 C n 1 63 C n 1 64 C n 1 65 U n 1 66 A n 1 67 G n 1 68 G n 1 69 G n 1 70 G n 1 71 A n 1 72 C n 1 73 G n 1 74 C n 1 75 C n 1 76 A n 2 1 MET n 2 2 ARG n 2 3 GLY n 2 4 SER n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 GLY n 2 12 SER n 2 13 MET n 2 14 SER n 2 15 GLU n 2 16 THR n 2 17 ALA n 2 18 LYS n 2 19 LYS n 2 20 VAL n 2 21 ILE n 2 22 VAL n 2 23 GLY n 2 24 MET n 2 25 SER n 2 26 GLY n 2 27 GLY n 2 28 VAL n 2 29 ASP n 2 30 SER n 2 31 SER n 2 32 VAL n 2 33 SER n 2 34 ALA n 2 35 TRP n 2 36 LEU n 2 37 LEU n 2 38 GLN n 2 39 GLN n 2 40 GLN n 2 41 GLY n 2 42 TYR n 2 43 GLN n 2 44 VAL n 2 45 GLU n 2 46 GLY n 2 47 LEU n 2 48 PHE n 2 49 MET n 2 50 LYS n 2 51 ASN n 2 52 TRP n 2 53 GLU n 2 54 GLU n 2 55 ASP n 2 56 ASP n 2 57 GLY n 2 58 GLU n 2 59 GLU n 2 60 TYR n 2 61 CYS n 2 62 THR n 2 63 ALA n 2 64 ALA n 2 65 ALA n 2 66 ASP n 2 67 LEU n 2 68 ALA n 2 69 ASP n 2 70 ALA n 2 71 GLN n 2 72 ALA n 2 73 VAL n 2 74 CYS n 2 75 ASP n 2 76 LYS n 2 77 LEU n 2 78 GLY n 2 79 ILE n 2 80 GLU n 2 81 LEU n 2 82 HIS n 2 83 THR n 2 84 VAL n 2 85 ASN n 2 86 PHE n 2 87 ALA n 2 88 ALA n 2 89 GLU n 2 90 TYR n 2 91 TRP n 2 92 ASP n 2 93 ASN n 2 94 VAL n 2 95 PHE n 2 96 GLU n 2 97 LEU n 2 98 PHE n 2 99 LEU n 2 100 ALA n 2 101 GLU n 2 102 TYR n 2 103 LYS n 2 104 ALA n 2 105 GLY n 2 106 ARG n 2 107 THR n 2 108 PRO n 2 109 ASN n 2 110 PRO n 2 111 ASP n 2 112 ILE n 2 113 LEU n 2 114 CYS n 2 115 ASN n 2 116 LYS n 2 117 GLU n 2 118 ILE n 2 119 LYS n 2 120 PHE n 2 121 LYS n 2 122 ALA n 2 123 PHE n 2 124 LEU n 2 125 GLU n 2 126 PHE n 2 127 ALA n 2 128 ALA n 2 129 GLU n 2 130 ASP n 2 131 LEU n 2 132 GLY n 2 133 ALA n 2 134 ASP n 2 135 TYR n 2 136 ILE n 2 137 ALA n 2 138 THR n 2 139 GLY n 2 140 HIS n 2 141 TYR n 2 142 VAL n 2 143 ARG n 2 144 ARG n 2 145 ALA n 2 146 ASP n 2 147 VAL n 2 148 ASP n 2 149 GLY n 2 150 LYS n 2 151 SER n 2 152 ARG n 2 153 LEU n 2 154 LEU n 2 155 ARG n 2 156 GLY n 2 157 LEU n 2 158 ASP n 2 159 SER n 2 160 ASN n 2 161 LYS n 2 162 ASP n 2 163 GLN n 2 164 SER n 2 165 TYR n 2 166 PHE n 2 167 LEU n 2 168 TYR n 2 169 THR n 2 170 LEU n 2 171 SER n 2 172 HIS n 2 173 GLU n 2 174 GLN n 2 175 ILE n 2 176 ALA n 2 177 GLN n 2 178 SER n 2 179 LEU n 2 180 PHE n 2 181 PRO n 2 182 VAL n 2 183 GLY n 2 184 GLU n 2 185 LEU n 2 186 GLU n 2 187 LYS n 2 188 PRO n 2 189 GLN n 2 190 VAL n 2 191 ARG n 2 192 LYS n 2 193 ILE n 2 194 ALA n 2 195 GLU n 2 196 ASP n 2 197 LEU n 2 198 GLY n 2 199 LEU n 2 200 VAL n 2 201 THR n 2 202 ALA n 2 203 LYS n 2 204 LYS n 2 205 LYS n 2 206 ASP n 2 207 SER n 2 208 THR n 2 209 GLY n 2 210 ILE n 2 211 CYS n 2 212 PHE n 2 213 ILE n 2 214 GLY n 2 215 GLU n 2 216 ARG n 2 217 LYS n 2 218 PHE n 2 219 ARG n 2 220 GLU n 2 221 PHE n 2 222 LEU n 2 223 GLY n 2 224 ARG n 2 225 TYR n 2 226 LEU n 2 227 PRO n 2 228 ALA n 2 229 GLN n 2 230 PRO n 2 231 GLY n 2 232 LYS n 2 233 ILE n 2 234 ILE n 2 235 THR n 2 236 VAL n 2 237 ASP n 2 238 GLY n 2 239 ASP n 2 240 GLU n 2 241 ILE n 2 242 GLY n 2 243 GLU n 2 244 HIS n 2 245 GLN n 2 246 GLY n 2 247 LEU n 2 248 MET n 2 249 TYR n 2 250 HIS n 2 251 THR n 2 252 LEU n 2 253 GLY n 2 254 GLN n 2 255 ARG n 2 256 LYS n 2 257 GLY n 2 258 LEU n 2 259 GLY n 2 260 ILE n 2 261 GLY n 2 262 GLY n 2 263 THR n 2 264 LYS n 2 265 GLU n 2 266 GLY n 2 267 THR n 2 268 GLU n 2 269 GLU n 2 270 PRO n 2 271 TRP n 2 272 TYR n 2 273 VAL n 2 274 VAL n 2 275 ASP n 2 276 LYS n 2 277 ASP n 2 278 VAL n 2 279 GLU n 2 280 ASN n 2 281 ASN n 2 282 ILE n 2 283 LEU n 2 284 VAL n 2 285 VAL n 2 286 ALA n 2 287 GLN n 2 288 GLY n 2 289 HIS n 2 290 GLU n 2 291 HIS n 2 292 PRO n 2 293 ARG n 2 294 LEU n 2 295 MET n 2 296 SER n 2 297 VAL n 2 298 GLY n 2 299 LEU n 2 300 ILE n 2 301 ALA n 2 302 GLN n 2 303 GLN n 2 304 LEU n 2 305 HIS n 2 306 TRP n 2 307 VAL n 2 308 ASP n 2 309 ARG n 2 310 GLU n 2 311 PRO n 2 312 PHE n 2 313 THR n 2 314 GLY n 2 315 THR n 2 316 MET n 2 317 ARG n 2 318 CYS n 2 319 THR n 2 320 VAL n 2 321 LYS n 2 322 THR n 2 323 ARG n 2 324 TYR n 2 325 ARG n 2 326 GLN n 2 327 THR n 2 328 ASP n 2 329 ILE n 2 330 PRO n 2 331 CYS n 2 332 THR n 2 333 VAL n 2 334 LYS n 2 335 ALA n 2 336 LEU n 2 337 ASP n 2 338 ASP n 2 339 ASP n 2 340 ARG n 2 341 ILE n 2 342 GLU n 2 343 VAL n 2 344 ILE n 2 345 PHE n 2 346 ASP n 2 347 GLU n 2 348 PRO n 2 349 VAL n 2 350 ALA n 2 351 ALA n 2 352 VAL n 2 353 THR n 2 354 PRO n 2 355 GLY n 2 356 GLN n 2 357 SER n 2 358 ALA n 2 359 VAL n 2 360 PHE n 2 361 TYR n 2 362 ASN n 2 363 GLY n 2 364 GLU n 2 365 VAL n 2 366 CYS n 2 367 LEU n 2 368 GLY n 2 369 GLY n 2 370 GLY n 2 371 ILE n 2 372 ILE n 2 373 GLU n 2 374 GLN n 2 375 ARG n 2 376 LEU n 2 377 PRO n 2 378 LEU n 2 379 PRO n 2 380 VAL n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE80L _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP TRMU_ECOLI P25745 2 1 ? ? 2 PDB 2DET 2DET 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DET A 13 ? 380 ? P25745 1 ? 368 ? 1 368 2 2 2DET C 1 ? 76 ? 2DET 1 ? 76 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DET MET A 1 ? UNP P25745 ? ? 'EXPRESSION TAG' -11 1 1 2DET ARG A 2 ? UNP P25745 ? ? 'EXPRESSION TAG' -10 2 1 2DET GLY A 3 ? UNP P25745 ? ? 'EXPRESSION TAG' -9 3 1 2DET SER A 4 ? UNP P25745 ? ? 'EXPRESSION TAG' -8 4 1 2DET HIS A 5 ? UNP P25745 ? ? 'EXPRESSION TAG' -7 5 1 2DET HIS A 6 ? UNP P25745 ? ? 'EXPRESSION TAG' -6 6 1 2DET HIS A 7 ? UNP P25745 ? ? 'EXPRESSION TAG' -5 7 1 2DET HIS A 8 ? UNP P25745 ? ? 'EXPRESSION TAG' -4 8 1 2DET HIS A 9 ? UNP P25745 ? ? 'EXPRESSION TAG' -3 9 1 2DET HIS A 10 ? UNP P25745 ? ? 'EXPRESSION TAG' -2 10 1 2DET GLY A 11 ? UNP P25745 ? ? 'EXPRESSION TAG' -1 11 1 2DET SER A 12 ? UNP P25745 ? ? 'EXPRESSION TAG' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DET _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.33 _exptl_crystal.density_percent_sol 71.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '100mM HEPES-Na buffer (pH 7.5), 1.3-1.5M lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 HEPES-Na ? ? ? 1 2 1 'lithium sulfate' ? ? ? 1 3 2 HEPES-Na ? ? ? 1 4 2 'lithium sulfate' ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2005-04-15 ? 2 CCD 'ADSC QUANTUM 315' 2005-06-04 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si 111 CHANNEL' MAD x-ray 2 1 M 'Si 111 CHANNEL' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97904 1.0 2 0.97931 1.0 3 0.9760 1.0 4 0.9820 1.0 5 1.0 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? '0.97904, 0.97931, 0.9760, 0.9820' 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? 1.0 # _reflns.entry_id 2DET _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.4 _reflns.number_obs 28072 _reflns.number_all ? _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.4 _reflns.B_iso_Wilson_estimate 0 _reflns.pdbx_redundancy 10.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.4 _reflns_shell.d_res_low 3.52 _reflns_shell.percent_possible_all 97 _reflns_shell.Rmerge_I_obs 0.281 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DET _refine.ls_number_reflns_obs 15834 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 203041.50 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.48 _refine.ls_d_res_high 3.40 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.263 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.263 _refine.ls_R_factor_R_free 0.305 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 758 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 83.7 _refine.aniso_B[1][1] 10.05 _refine.aniso_B[2][2] -17.52 _refine.aniso_B[3][3] 7.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.118676 _refine.solvent_model_param_bsol 10 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DET _refine_analyze.Luzzati_coordinate_error_obs 0.38 _refine_analyze.Luzzati_sigma_a_obs 0.62 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.54 _refine_analyze.Luzzati_sigma_a_free 0.86 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2861 _refine_hist.pdbx_number_atoms_nucleic_acid 1488 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4354 _refine_hist.d_res_high 3.40 _refine_hist.d_res_low 39.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.23 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.40 _refine_ls_shell.d_res_low 3.61 _refine_ls_shell.number_reflns_R_work 2443 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 96.4 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DET _struct.title 'Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state' _struct.pdbx_descriptor 'tRNA-specific 2-thiouridylase mnmA(E.C.2.8.1.-)/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DET _struct_keywords.pdbx_keywords Transferase/RNA _struct_keywords.text 'Protein-RNA complex, Transferase-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY B 27 ? GLY B 41 ? GLY A 15 GLY A 29 1 ? 15 HELX_P HELX_P2 2 GLY B 57 ? GLY B 78 ? GLY A 45 GLY A 66 1 ? 22 HELX_P HELX_P3 3 PHE B 86 ? VAL B 94 ? PHE A 74 VAL A 82 1 ? 9 HELX_P HELX_P4 4 VAL B 94 ? ALA B 104 ? VAL A 82 ALA A 92 1 ? 11 HELX_P HELX_P5 5 PRO B 110 ? ILE B 118 ? PRO A 98 ILE A 106 1 ? 9 HELX_P HELX_P6 6 LYS B 121 ? GLU B 129 ? LYS A 109 GLU A 117 1 ? 9 HELX_P HELX_P7 7 ASP B 158 ? ASP B 162 ? ASP A 146 ASP A 150 5 ? 5 HELX_P HELX_P8 8 GLN B 163 ? THR B 169 ? GLN A 151 THR A 157 5 ? 7 HELX_P HELX_P9 9 HIS B 172 ? GLN B 177 ? HIS A 160 GLN A 165 1 ? 6 HELX_P HELX_P10 10 PRO B 181 ? LEU B 185 ? PRO A 169 LEU A 173 5 ? 5 HELX_P HELX_P11 11 GLU B 186 ? GLY B 198 ? GLU A 174 GLY A 186 1 ? 13 HELX_P HELX_P12 12 LYS B 217 ? GLY B 223 ? LYS A 205 GLY A 211 1 ? 7 HELX_P HELX_P13 13 HIS B 291 ? ARG B 293 ? HIS A 279 ARG A 281 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 114 SG ? ? ? 1_555 B CYS 211 SG ? ? A CYS 102 A CYS 199 1_555 ? ? ? ? ? ? ? 2.047 ? hydrog1 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N2 ? ? C C 3 C G 69 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog2 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 68 O6 ? ? C C 4 C G 68 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog3 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 68 N1 ? ? C C 5 C G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 68 O6 ? ? C C 5 C G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 68 N2 ? ? C C 5 C G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 67 N1 ? ? C C 6 C G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 67 O6 ? ? C C 6 C G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 67 N2 ? ? C C 6 C G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? C U 8 C A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog10 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? C U 8 C A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog11 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 24 N7 ? ? C C 9 C G 23 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog12 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 26 N3 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 26 O2 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 26 N4 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 25 N1 ? ? C U 11 C A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 25 N6 ? ? C U 11 C A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 24 N1 ? ? C C 12 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 24 O6 ? ? C C 12 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 24 N2 ? ? C C 12 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A U 13 N3 ? ? ? 1_555 A G 23 O6 ? ? C U 13 C G 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog21 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 23 N1 ? ? C U 13 C G 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog22 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 22 N3 ? ? C A 14 C A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog23 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 20 O2 ? ? C G 15 C C 20 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog24 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? C G 15 C C 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog25 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? C G 15 C C 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog26 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 55 O2 ? ? C G 17 C U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog27 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 56 N3 ? ? C G 18 C C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 56 O2 ? ? C G 18 C C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 56 N4 ? ? C G 18 C C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 20 O2 ? ? ? 1_555 A C 48 N4 ? ? C C 20 C C 47 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog31 hydrog ? ? A G 23 N7 ? ? ? 1_555 A A 47 N6 ? ? C G 22 C A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog32 hydrog ? ? A A 27 N6 ? ? ? 1_555 A U 45 O4 ? ? C A 26 C U 44 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? hydrog33 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 44 N1 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 44 O6 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 44 N2 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 43 N1 ? ? C C 28 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 43 O6 ? ? C C 28 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 43 N2 ? ? C C 28 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 42 N3 ? ? C G 29 C C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 42 O2 ? ? C G 29 C C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 42 N4 ? ? C G 29 C C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 41 N1 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 41 O6 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 41 N2 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 40 N1 ? ? C C 31 C G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 40 O6 ? ? C C 31 C G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 40 N2 ? ? C C 31 C G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 33 O2 ? ? ? 1_555 A C 39 N4 ? ? C C 32 C C 38 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog49 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 64 N3 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 64 O2 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 64 N4 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A G 50 N1 ? ? ? 1_555 A U 65 O4 ? ? C G 50 C U 65 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog53 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? C G 51 C C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? C G 51 C C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? C G 51 C C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 62 N3 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 62 O2 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 62 N4 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A U 54 N3 ? ? ? 1_555 A A 58 N7 ? ? C U 54 C A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog63 hydrog ? ? A U 54 O2 ? ? ? 1_555 A A 58 N6 ? ? C U 54 C A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog64 hydrog ? ? A G 69 N3 ? ? ? 1_555 A G 70 N1 ? ? C G 69 C G 70 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 2 ? D ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN B 43 ? LEU B 47 ? GLN A 31 LEU A 35 A 2 LYS B 19 ? GLY B 23 ? LYS A 7 GLY A 11 A 3 TYR B 135 ? ALA B 137 ? TYR A 123 ALA A 125 A 4 SER B 178 ? LEU B 179 ? SER A 166 LEU A 167 B 1 ARG B 143 ? VAL B 147 ? ARG A 131 VAL A 135 B 2 LYS B 150 ? LEU B 154 ? LYS A 138 LEU A 142 C 1 TRP B 271 ? ASP B 275 ? TRP A 259 ASP A 263 C 2 VAL B 284 ? GLN B 287 ? VAL A 272 GLN A 275 D 1 MET B 295 ? GLN B 302 ? MET A 283 GLN A 290 D 2 ILE B 341 ? ALA B 350 ? ILE A 329 ALA A 338 D 3 ILE B 329 ? LYS B 334 ? ILE A 317 LYS A 322 D 4 THR B 315 ? LYS B 321 ? THR A 303 LYS A 309 D 5 SER B 357 ? ASN B 362 ? SER A 345 ASN A 350 D 6 VAL B 365 ? PRO B 377 ? VAL A 353 PRO A 365 D 7 MET B 295 ? GLN B 302 ? MET A 283 GLN A 290 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN B 43 ? O GLN A 31 N VAL B 20 ? N VAL A 8 A 2 3 N GLY B 23 ? N GLY A 11 O ALA B 137 ? O ALA A 125 A 3 4 N ILE B 136 ? N ILE A 124 O LEU B 179 ? O LEU A 167 B 1 2 N ARG B 143 ? N ARG A 131 O LEU B 154 ? O LEU A 142 C 1 2 N TYR B 272 ? N TYR A 260 O ALA B 286 ? O ALA A 274 D 1 2 N LEU B 299 ? N LEU A 287 O VAL B 343 ? O VAL A 331 D 2 3 O ASP B 346 ? O ASP A 334 N PRO B 330 ? N PRO A 318 D 3 4 O CYS B 331 ? O CYS A 319 N CYS B 318 ? N CYS A 306 D 4 5 N LYS B 321 ? N LYS A 309 O VAL B 359 ? O VAL A 347 D 5 6 N ALA B 358 ? N ALA A 346 O GLY B 370 ? O GLY A 358 D 6 7 O LEU B 376 ? O LEU A 364 N VAL B 297 ? N VAL A 285 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 5001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER B 25 ? SER A 13 . ? 1_555 ? 2 AC1 5 GLY B 26 ? GLY A 14 . ? 1_555 ? 3 AC1 5 GLY B 27 ? GLY A 15 . ? 1_555 ? 4 AC1 5 ASP B 29 ? ASP A 17 . ? 1_555 ? 5 AC1 5 SER B 30 ? SER A 18 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DET _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DET _atom_sites.fract_transf_matrix[1][1] 0.009849 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009258 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004734 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G C . n A 1 2 U 2 2 2 U U C . n A 1 3 C 3 3 3 C C C . n A 1 4 C 4 4 4 C C C . n A 1 5 C 5 5 5 C C C . n A 1 6 C 6 6 6 C C C . n A 1 7 U 7 7 7 U U C . n A 1 8 U 8 8 8 U U C . n A 1 9 C 9 9 9 C C C . n A 1 10 G 10 10 10 G G C . n A 1 11 U 11 11 11 U U C . n A 1 12 C 12 12 12 C C C . n A 1 13 U 13 13 13 U U C . n A 1 14 A 14 14 14 A A C . n A 1 15 G 15 15 15 G G C . n A 1 16 A 16 16 16 A A C . n A 1 17 G 17 17 17 G G C . n A 1 18 G 18 18 18 G G C . n A 1 19 C 19 19 19 C C C . n A 1 20 C 20 20 20 C C C . n A 1 21 C 21 20 20 C C C A n A 1 22 A 22 21 21 A A C . n A 1 23 G 23 22 22 G G C . n A 1 24 G 24 23 23 G G C . n A 1 25 A 25 24 24 A A C . n A 1 26 C 26 25 25 C C C . n A 1 27 A 27 26 26 A A C . n A 1 28 C 28 27 27 C C C . n A 1 29 C 29 28 28 C C C . n A 1 30 G 30 29 29 G G C . n A 1 31 C 31 30 30 C C C . n A 1 32 C 32 31 31 C C C . n A 1 33 C 33 32 32 C C C . n A 1 34 U 34 33 33 U U C . n A 1 35 U 35 34 34 U U C . n A 1 36 U 36 35 35 U U C . n A 1 37 C 37 36 36 C C C . n A 1 38 A 38 37 37 A A C . n A 1 39 C 39 38 38 C C C . n A 1 40 G 40 39 39 G G C . n A 1 41 G 41 40 40 G G C . n A 1 42 C 42 41 41 C C C . n A 1 43 G 43 42 42 G G C . n A 1 44 G 44 43 43 G G C . n A 1 45 U 45 44 44 U U C . n A 1 46 A 46 45 45 A A C . n A 1 47 A 47 46 46 A A C . n A 1 48 C 48 47 47 C C C . n A 1 49 A 49 49 49 A A C . n A 1 50 G 50 50 50 G G C . n A 1 51 G 51 51 51 G G C . n A 1 52 G 52 52 52 G G C . n A 1 53 G 53 53 53 G G C . n A 1 54 U 54 54 54 U U C . n A 1 55 U 55 55 55 U U C . n A 1 56 C 56 56 56 C C C . n A 1 57 G 57 57 57 G G C . n A 1 58 A 58 58 58 A A C . n A 1 59 A 59 59 59 A A C . n A 1 60 U 60 60 60 U U C . n A 1 61 C 61 61 61 C C C . n A 1 62 C 62 62 62 C C C . n A 1 63 C 63 63 63 C C C . n A 1 64 C 64 64 64 C C C . n A 1 65 U 65 65 65 U U C . n A 1 66 A 66 66 66 A A C . n A 1 67 G 67 67 67 G G C . n A 1 68 G 68 68 68 G G C . n A 1 69 G 69 69 69 G G C . n A 1 70 G 70 70 70 G G C . n A 1 71 A 71 71 ? ? ? C . n A 1 72 C 72 72 ? ? ? C . n A 1 73 G 73 73 ? ? ? C . n A 1 74 C 74 74 ? ? ? C . n A 1 75 C 75 75 ? ? ? C . n A 1 76 A 76 76 ? ? ? C . n B 2 1 MET 1 -11 ? ? ? A . n B 2 2 ARG 2 -10 ? ? ? A . n B 2 3 GLY 3 -9 ? ? ? A . n B 2 4 SER 4 -8 ? ? ? A . n B 2 5 HIS 5 -7 ? ? ? A . n B 2 6 HIS 6 -6 ? ? ? A . n B 2 7 HIS 7 -5 ? ? ? A . n B 2 8 HIS 8 -4 ? ? ? A . n B 2 9 HIS 9 -3 ? ? ? A . n B 2 10 HIS 10 -2 ? ? ? A . n B 2 11 GLY 11 -1 ? ? ? A . n B 2 12 SER 12 0 ? ? ? A . n B 2 13 MET 13 1 ? ? ? A . n B 2 14 SER 14 2 ? ? ? A . n B 2 15 GLU 15 3 ? ? ? A . n B 2 16 THR 16 4 4 THR THR A . n B 2 17 ALA 17 5 5 ALA ALA A . n B 2 18 LYS 18 6 6 LYS LYS A . n B 2 19 LYS 19 7 7 LYS LYS A . n B 2 20 VAL 20 8 8 VAL VAL A . n B 2 21 ILE 21 9 9 ILE ILE A . n B 2 22 VAL 22 10 10 VAL VAL A . n B 2 23 GLY 23 11 11 GLY GLY A . n B 2 24 MET 24 12 12 MET MET A . n B 2 25 SER 25 13 13 SER SER A . n B 2 26 GLY 26 14 14 GLY GLY A . n B 2 27 GLY 27 15 15 GLY GLY A . n B 2 28 VAL 28 16 16 VAL VAL A . n B 2 29 ASP 29 17 17 ASP ASP A . n B 2 30 SER 30 18 18 SER SER A . n B 2 31 SER 31 19 19 SER SER A . n B 2 32 VAL 32 20 20 VAL VAL A . n B 2 33 SER 33 21 21 SER SER A . n B 2 34 ALA 34 22 22 ALA ALA A . n B 2 35 TRP 35 23 23 TRP TRP A . n B 2 36 LEU 36 24 24 LEU LEU A . n B 2 37 LEU 37 25 25 LEU LEU A . n B 2 38 GLN 38 26 26 GLN GLN A . n B 2 39 GLN 39 27 27 GLN GLN A . n B 2 40 GLN 40 28 28 GLN GLN A . n B 2 41 GLY 41 29 29 GLY GLY A . n B 2 42 TYR 42 30 30 TYR TYR A . n B 2 43 GLN 43 31 31 GLN GLN A . n B 2 44 VAL 44 32 32 VAL VAL A . n B 2 45 GLU 45 33 33 GLU GLU A . n B 2 46 GLY 46 34 34 GLY GLY A . n B 2 47 LEU 47 35 35 LEU LEU A . n B 2 48 PHE 48 36 36 PHE PHE A . n B 2 49 MET 49 37 37 MET MET A . n B 2 50 LYS 50 38 38 LYS LYS A . n B 2 51 ASN 51 39 39 ASN ASN A . n B 2 52 TRP 52 40 40 TRP TRP A . n B 2 53 GLU 53 41 41 GLU GLU A . n B 2 54 GLU 54 42 42 GLU GLU A . n B 2 55 ASP 55 43 43 ASP ASP A . n B 2 56 ASP 56 44 44 ASP ASP A . n B 2 57 GLY 57 45 45 GLY GLY A . n B 2 58 GLU 58 46 46 GLU GLU A . n B 2 59 GLU 59 47 47 GLU GLU A . n B 2 60 TYR 60 48 48 TYR TYR A . n B 2 61 CYS 61 49 49 CYS CYS A . n B 2 62 THR 62 50 50 THR THR A . n B 2 63 ALA 63 51 51 ALA ALA A . n B 2 64 ALA 64 52 52 ALA ALA A . n B 2 65 ALA 65 53 53 ALA ALA A . n B 2 66 ASP 66 54 54 ASP ASP A . n B 2 67 LEU 67 55 55 LEU LEU A . n B 2 68 ALA 68 56 56 ALA ALA A . n B 2 69 ASP 69 57 57 ASP ASP A . n B 2 70 ALA 70 58 58 ALA ALA A . n B 2 71 GLN 71 59 59 GLN GLN A . n B 2 72 ALA 72 60 60 ALA ALA A . n B 2 73 VAL 73 61 61 VAL VAL A . n B 2 74 CYS 74 62 62 CYS CYS A . n B 2 75 ASP 75 63 63 ASP ASP A . n B 2 76 LYS 76 64 64 LYS LYS A . n B 2 77 LEU 77 65 65 LEU LEU A . n B 2 78 GLY 78 66 66 GLY GLY A . n B 2 79 ILE 79 67 67 ILE ILE A . n B 2 80 GLU 80 68 68 GLU GLU A . n B 2 81 LEU 81 69 69 LEU LEU A . n B 2 82 HIS 82 70 70 HIS HIS A . n B 2 83 THR 83 71 71 THR THR A . n B 2 84 VAL 84 72 72 VAL VAL A . n B 2 85 ASN 85 73 73 ASN ASN A . n B 2 86 PHE 86 74 74 PHE PHE A . n B 2 87 ALA 87 75 75 ALA ALA A . n B 2 88 ALA 88 76 76 ALA ALA A . n B 2 89 GLU 89 77 77 GLU GLU A . n B 2 90 TYR 90 78 78 TYR TYR A . n B 2 91 TRP 91 79 79 TRP TRP A . n B 2 92 ASP 92 80 80 ASP ASP A . n B 2 93 ASN 93 81 81 ASN ASN A . n B 2 94 VAL 94 82 82 VAL VAL A . n B 2 95 PHE 95 83 83 PHE PHE A . n B 2 96 GLU 96 84 84 GLU GLU A . n B 2 97 LEU 97 85 85 LEU LEU A . n B 2 98 PHE 98 86 86 PHE PHE A . n B 2 99 LEU 99 87 87 LEU LEU A . n B 2 100 ALA 100 88 88 ALA ALA A . n B 2 101 GLU 101 89 89 GLU GLU A . n B 2 102 TYR 102 90 90 TYR TYR A . n B 2 103 LYS 103 91 91 LYS LYS A . n B 2 104 ALA 104 92 92 ALA ALA A . n B 2 105 GLY 105 93 93 GLY GLY A . n B 2 106 ARG 106 94 94 ARG ARG A . n B 2 107 THR 107 95 95 THR THR A . n B 2 108 PRO 108 96 96 PRO PRO A . n B 2 109 ASN 109 97 97 ASN ASN A . n B 2 110 PRO 110 98 98 PRO PRO A . n B 2 111 ASP 111 99 99 ASP ASP A . n B 2 112 ILE 112 100 100 ILE ILE A . n B 2 113 LEU 113 101 101 LEU LEU A . n B 2 114 CYS 114 102 102 CYS CYS A . n B 2 115 ASN 115 103 103 ASN ASN A . n B 2 116 LYS 116 104 104 LYS LYS A . n B 2 117 GLU 117 105 105 GLU GLU A . n B 2 118 ILE 118 106 106 ILE ILE A . n B 2 119 LYS 119 107 107 LYS LYS A . n B 2 120 PHE 120 108 108 PHE PHE A . n B 2 121 LYS 121 109 109 LYS LYS A . n B 2 122 ALA 122 110 110 ALA ALA A . n B 2 123 PHE 123 111 111 PHE PHE A . n B 2 124 LEU 124 112 112 LEU LEU A . n B 2 125 GLU 125 113 113 GLU GLU A . n B 2 126 PHE 126 114 114 PHE PHE A . n B 2 127 ALA 127 115 115 ALA ALA A . n B 2 128 ALA 128 116 116 ALA ALA A . n B 2 129 GLU 129 117 117 GLU GLU A . n B 2 130 ASP 130 118 118 ASP ASP A . n B 2 131 LEU 131 119 119 LEU LEU A . n B 2 132 GLY 132 120 120 GLY GLY A . n B 2 133 ALA 133 121 121 ALA ALA A . n B 2 134 ASP 134 122 122 ASP ASP A . n B 2 135 TYR 135 123 123 TYR TYR A . n B 2 136 ILE 136 124 124 ILE ILE A . n B 2 137 ALA 137 125 125 ALA ALA A . n B 2 138 THR 138 126 126 THR THR A . n B 2 139 GLY 139 127 127 GLY GLY A . n B 2 140 HIS 140 128 128 HIS HIS A . n B 2 141 TYR 141 129 129 TYR TYR A . n B 2 142 VAL 142 130 130 VAL VAL A . n B 2 143 ARG 143 131 131 ARG ARG A . n B 2 144 ARG 144 132 132 ARG ARG A . n B 2 145 ALA 145 133 133 ALA ALA A . n B 2 146 ASP 146 134 134 ASP ASP A . n B 2 147 VAL 147 135 135 VAL VAL A . n B 2 148 ASP 148 136 136 ASP ASP A . n B 2 149 GLY 149 137 137 GLY GLY A . n B 2 150 LYS 150 138 138 LYS LYS A . n B 2 151 SER 151 139 139 SER SER A . n B 2 152 ARG 152 140 140 ARG ARG A . n B 2 153 LEU 153 141 141 LEU LEU A . n B 2 154 LEU 154 142 142 LEU LEU A . n B 2 155 ARG 155 143 143 ARG ARG A . n B 2 156 GLY 156 144 144 GLY GLY A . n B 2 157 LEU 157 145 145 LEU LEU A . n B 2 158 ASP 158 146 146 ASP ASP A . n B 2 159 SER 159 147 147 SER SER A . n B 2 160 ASN 160 148 148 ASN ASN A . n B 2 161 LYS 161 149 149 LYS LYS A . n B 2 162 ASP 162 150 150 ASP ASP A . n B 2 163 GLN 163 151 151 GLN GLN A . n B 2 164 SER 164 152 152 SER SER A . n B 2 165 TYR 165 153 153 TYR TYR A . n B 2 166 PHE 166 154 154 PHE PHE A . n B 2 167 LEU 167 155 155 LEU LEU A . n B 2 168 TYR 168 156 156 TYR TYR A . n B 2 169 THR 169 157 157 THR THR A . n B 2 170 LEU 170 158 158 LEU LEU A . n B 2 171 SER 171 159 159 SER SER A . n B 2 172 HIS 172 160 160 HIS HIS A . n B 2 173 GLU 173 161 161 GLU GLU A . n B 2 174 GLN 174 162 162 GLN GLN A . n B 2 175 ILE 175 163 163 ILE ILE A . n B 2 176 ALA 176 164 164 ALA ALA A . n B 2 177 GLN 177 165 165 GLN GLN A . n B 2 178 SER 178 166 166 SER SER A . n B 2 179 LEU 179 167 167 LEU LEU A . n B 2 180 PHE 180 168 168 PHE PHE A . n B 2 181 PRO 181 169 169 PRO PRO A . n B 2 182 VAL 182 170 170 VAL VAL A . n B 2 183 GLY 183 171 171 GLY GLY A . n B 2 184 GLU 184 172 172 GLU GLU A . n B 2 185 LEU 185 173 173 LEU LEU A . n B 2 186 GLU 186 174 174 GLU GLU A . n B 2 187 LYS 187 175 175 LYS LYS A . n B 2 188 PRO 188 176 176 PRO PRO A . n B 2 189 GLN 189 177 177 GLN GLN A . n B 2 190 VAL 190 178 178 VAL VAL A . n B 2 191 ARG 191 179 179 ARG ARG A . n B 2 192 LYS 192 180 180 LYS LYS A . n B 2 193 ILE 193 181 181 ILE ILE A . n B 2 194 ALA 194 182 182 ALA ALA A . n B 2 195 GLU 195 183 183 GLU GLU A . n B 2 196 ASP 196 184 184 ASP ASP A . n B 2 197 LEU 197 185 185 LEU LEU A . n B 2 198 GLY 198 186 186 GLY GLY A . n B 2 199 LEU 199 187 187 LEU LEU A . n B 2 200 VAL 200 188 188 VAL VAL A . n B 2 201 THR 201 189 189 THR THR A . n B 2 202 ALA 202 190 190 ALA ALA A . n B 2 203 LYS 203 191 191 LYS LYS A . n B 2 204 LYS 204 192 192 LYS LYS A . n B 2 205 LYS 205 193 193 LYS LYS A . n B 2 206 ASP 206 194 194 ASP ASP A . n B 2 207 SER 207 195 195 SER SER A . n B 2 208 THR 208 196 196 THR THR A . n B 2 209 GLY 209 197 197 GLY GLY A . n B 2 210 ILE 210 198 198 ILE ILE A . n B 2 211 CYS 211 199 199 CYS CYS A . n B 2 212 PHE 212 200 200 PHE PHE A . n B 2 213 ILE 213 201 201 ILE ILE A . n B 2 214 GLY 214 202 202 GLY GLY A . n B 2 215 GLU 215 203 203 GLU GLU A . n B 2 216 ARG 216 204 204 ARG ARG A . n B 2 217 LYS 217 205 205 LYS LYS A . n B 2 218 PHE 218 206 206 PHE PHE A . n B 2 219 ARG 219 207 207 ARG ARG A . n B 2 220 GLU 220 208 208 GLU GLU A . n B 2 221 PHE 221 209 209 PHE PHE A . n B 2 222 LEU 222 210 210 LEU LEU A . n B 2 223 GLY 223 211 211 GLY GLY A . n B 2 224 ARG 224 212 212 ARG ARG A . n B 2 225 TYR 225 213 213 TYR TYR A . n B 2 226 LEU 226 214 214 LEU LEU A . n B 2 227 PRO 227 215 215 PRO PRO A . n B 2 228 ALA 228 216 216 ALA ALA A . n B 2 229 GLN 229 217 217 GLN GLN A . n B 2 230 PRO 230 218 218 PRO PRO A . n B 2 231 GLY 231 219 219 GLY GLY A . n B 2 232 LYS 232 220 220 LYS LYS A . n B 2 233 ILE 233 221 221 ILE ILE A . n B 2 234 ILE 234 222 222 ILE ILE A . n B 2 235 THR 235 223 223 THR THR A . n B 2 236 VAL 236 224 224 VAL VAL A . n B 2 237 ASP 237 225 225 ASP ASP A . n B 2 238 GLY 238 226 226 GLY GLY A . n B 2 239 ASP 239 227 227 ASP ASP A . n B 2 240 GLU 240 228 228 GLU GLU A . n B 2 241 ILE 241 229 229 ILE ILE A . n B 2 242 GLY 242 230 230 GLY GLY A . n B 2 243 GLU 243 231 231 GLU GLU A . n B 2 244 HIS 244 232 232 HIS HIS A . n B 2 245 GLN 245 233 233 GLN GLN A . n B 2 246 GLY 246 234 234 GLY GLY A . n B 2 247 LEU 247 235 235 LEU LEU A . n B 2 248 MET 248 236 236 MET MET A . n B 2 249 TYR 249 237 237 TYR TYR A . n B 2 250 HIS 250 238 238 HIS HIS A . n B 2 251 THR 251 239 239 THR THR A . n B 2 252 LEU 252 240 240 LEU LEU A . n B 2 253 GLY 253 241 241 GLY GLY A . n B 2 254 GLN 254 242 242 GLN GLN A . n B 2 255 ARG 255 243 243 ARG ARG A . n B 2 256 LYS 256 244 244 LYS LYS A . n B 2 257 GLY 257 245 245 GLY GLY A . n B 2 258 LEU 258 246 246 LEU LEU A . n B 2 259 GLY 259 247 247 GLY GLY A . n B 2 260 ILE 260 248 248 ILE ILE A . n B 2 261 GLY 261 249 249 GLY GLY A . n B 2 262 GLY 262 250 250 GLY GLY A . n B 2 263 THR 263 251 251 THR THR A . n B 2 264 LYS 264 252 252 LYS LYS A . n B 2 265 GLU 265 253 253 GLU GLU A . n B 2 266 GLY 266 254 254 GLY GLY A . n B 2 267 THR 267 255 255 THR THR A . n B 2 268 GLU 268 256 256 GLU GLU A . n B 2 269 GLU 269 257 257 GLU GLU A . n B 2 270 PRO 270 258 258 PRO PRO A . n B 2 271 TRP 271 259 259 TRP TRP A . n B 2 272 TYR 272 260 260 TYR TYR A . n B 2 273 VAL 273 261 261 VAL VAL A . n B 2 274 VAL 274 262 262 VAL VAL A . n B 2 275 ASP 275 263 263 ASP ASP A . n B 2 276 LYS 276 264 264 LYS LYS A . n B 2 277 ASP 277 265 265 ASP ASP A . n B 2 278 VAL 278 266 266 VAL VAL A . n B 2 279 GLU 279 267 267 GLU GLU A . n B 2 280 ASN 280 268 268 ASN ASN A . n B 2 281 ASN 281 269 269 ASN ASN A . n B 2 282 ILE 282 270 270 ILE ILE A . n B 2 283 LEU 283 271 271 LEU LEU A . n B 2 284 VAL 284 272 272 VAL VAL A . n B 2 285 VAL 285 273 273 VAL VAL A . n B 2 286 ALA 286 274 274 ALA ALA A . n B 2 287 GLN 287 275 275 GLN GLN A . n B 2 288 GLY 288 276 276 GLY GLY A . n B 2 289 HIS 289 277 277 HIS HIS A . n B 2 290 GLU 290 278 278 GLU GLU A . n B 2 291 HIS 291 279 279 HIS HIS A . n B 2 292 PRO 292 280 280 PRO PRO A . n B 2 293 ARG 293 281 281 ARG ARG A . n B 2 294 LEU 294 282 282 LEU LEU A . n B 2 295 MET 295 283 283 MET MET A . n B 2 296 SER 296 284 284 SER SER A . n B 2 297 VAL 297 285 285 VAL VAL A . n B 2 298 GLY 298 286 286 GLY GLY A . n B 2 299 LEU 299 287 287 LEU LEU A . n B 2 300 ILE 300 288 288 ILE ILE A . n B 2 301 ALA 301 289 289 ALA ALA A . n B 2 302 GLN 302 290 290 GLN GLN A . n B 2 303 GLN 303 291 291 GLN GLN A . n B 2 304 LEU 304 292 292 LEU LEU A . n B 2 305 HIS 305 293 293 HIS HIS A . n B 2 306 TRP 306 294 294 TRP TRP A . n B 2 307 VAL 307 295 295 VAL VAL A . n B 2 308 ASP 308 296 296 ASP ASP A . n B 2 309 ARG 309 297 297 ARG ARG A . n B 2 310 GLU 310 298 298 GLU GLU A . n B 2 311 PRO 311 299 299 PRO PRO A . n B 2 312 PHE 312 300 300 PHE PHE A . n B 2 313 THR 313 301 301 THR THR A . n B 2 314 GLY 314 302 302 GLY GLY A . n B 2 315 THR 315 303 303 THR THR A . n B 2 316 MET 316 304 304 MET MET A . n B 2 317 ARG 317 305 305 ARG ARG A . n B 2 318 CYS 318 306 306 CYS CYS A . n B 2 319 THR 319 307 307 THR THR A . n B 2 320 VAL 320 308 308 VAL VAL A . n B 2 321 LYS 321 309 309 LYS LYS A . n B 2 322 THR 322 310 310 THR THR A . n B 2 323 ARG 323 311 311 ARG ARG A . n B 2 324 TYR 324 312 312 TYR TYR A . n B 2 325 ARG 325 313 313 ARG ARG A . n B 2 326 GLN 326 314 314 GLN GLN A . n B 2 327 THR 327 315 315 THR THR A . n B 2 328 ASP 328 316 316 ASP ASP A . n B 2 329 ILE 329 317 317 ILE ILE A . n B 2 330 PRO 330 318 318 PRO PRO A . n B 2 331 CYS 331 319 319 CYS CYS A . n B 2 332 THR 332 320 320 THR THR A . n B 2 333 VAL 333 321 321 VAL VAL A . n B 2 334 LYS 334 322 322 LYS LYS A . n B 2 335 ALA 335 323 323 ALA ALA A . n B 2 336 LEU 336 324 324 LEU LEU A . n B 2 337 ASP 337 325 325 ASP ASP A . n B 2 338 ASP 338 326 326 ASP ASP A . n B 2 339 ASP 339 327 327 ASP ASP A . n B 2 340 ARG 340 328 328 ARG ARG A . n B 2 341 ILE 341 329 329 ILE ILE A . n B 2 342 GLU 342 330 330 GLU GLU A . n B 2 343 VAL 343 331 331 VAL VAL A . n B 2 344 ILE 344 332 332 ILE ILE A . n B 2 345 PHE 345 333 333 PHE PHE A . n B 2 346 ASP 346 334 334 ASP ASP A . n B 2 347 GLU 347 335 335 GLU GLU A . n B 2 348 PRO 348 336 336 PRO PRO A . n B 2 349 VAL 349 337 337 VAL VAL A . n B 2 350 ALA 350 338 338 ALA ALA A . n B 2 351 ALA 351 339 339 ALA ALA A . n B 2 352 VAL 352 340 340 VAL VAL A . n B 2 353 THR 353 341 341 THR THR A . n B 2 354 PRO 354 342 342 PRO PRO A . n B 2 355 GLY 355 343 343 GLY GLY A . n B 2 356 GLN 356 344 344 GLN GLN A . n B 2 357 SER 357 345 345 SER SER A . n B 2 358 ALA 358 346 346 ALA ALA A . n B 2 359 VAL 359 347 347 VAL VAL A . n B 2 360 PHE 360 348 348 PHE PHE A . n B 2 361 TYR 361 349 349 TYR TYR A . n B 2 362 ASN 362 350 350 ASN ASN A . n B 2 363 GLY 363 351 351 GLY GLY A . n B 2 364 GLU 364 352 352 GLU GLU A . n B 2 365 VAL 365 353 353 VAL VAL A . n B 2 366 CYS 366 354 354 CYS CYS A . n B 2 367 LEU 367 355 355 LEU LEU A . n B 2 368 GLY 368 356 356 GLY GLY A . n B 2 369 GLY 369 357 357 GLY GLY A . n B 2 370 GLY 370 358 358 GLY GLY A . n B 2 371 ILE 371 359 359 ILE ILE A . n B 2 372 ILE 372 360 360 ILE ILE A . n B 2 373 GLU 373 361 361 GLU GLU A . n B 2 374 GLN 374 362 362 GLN GLN A . n B 2 375 ARG 375 363 363 ARG ARG A . n B 2 376 LEU 376 364 364 LEU LEU A . n B 2 377 PRO 377 365 365 PRO PRO A . n B 2 378 LEU 378 366 366 LEU LEU A . n B 2 379 PRO 379 367 367 PRO PRO A . n B 2 380 VAL 380 368 368 VAL VAL A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 SHARP phasing . ? 3 CNS refinement 1.1 ? 4 HKL-2000 'data reduction' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.521 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 C G 18 ? ? "C1'" C G 18 ? ? "C2'" C G 18 ? ? 122.07 114.00 8.07 1.30 N 2 1 N1 C C 47 ? ? "C1'" C C 47 ? ? "C2'" C C 47 ? ? 122.41 114.00 8.41 1.30 N 3 1 CA A CYS 199 ? ? CB A CYS 199 ? ? SG A CYS 199 ? ? 123.84 114.20 9.64 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 17 ? ? -39.53 -75.06 2 1 SER A 19 ? ? -27.00 -88.51 3 1 TYR A 30 ? ? -14.06 134.35 4 1 GLU A 41 ? ? -68.14 87.21 5 1 GLU A 42 ? ? -19.83 127.62 6 1 ASP A 44 ? ? -120.12 -103.06 7 1 GLU A 46 ? ? -39.16 -33.67 8 1 THR A 50 ? ? -44.95 -70.52 9 1 ALA A 51 ? ? -25.52 -61.92 10 1 ALA A 58 ? ? -55.75 -76.96 11 1 ALA A 60 ? ? -31.89 -36.30 12 1 LYS A 64 ? ? -56.98 -3.34 13 1 ALA A 75 ? ? -39.50 -36.88 14 1 ALA A 76 ? ? -53.53 -76.60 15 1 TYR A 78 ? ? -31.92 -76.02 16 1 VAL A 82 ? ? -123.54 -79.83 17 1 GLU A 84 ? ? -28.62 -65.96 18 1 PHE A 86 ? ? -35.03 -31.67 19 1 ILE A 100 ? ? -61.15 0.79 20 1 ILE A 106 ? ? -95.54 -84.27 21 1 LYS A 107 ? ? -37.22 -37.78 22 1 LYS A 109 ? ? -74.24 -83.60 23 1 PHE A 111 ? ? -44.60 -73.84 24 1 GLU A 113 ? ? -51.89 -71.04 25 1 PHE A 114 ? ? -57.36 10.84 26 1 ASP A 118 ? ? -124.75 -75.57 27 1 LEU A 119 ? ? -58.39 -4.36 28 1 ASP A 122 ? ? -93.25 -70.13 29 1 HIS A 128 ? ? -37.22 119.77 30 1 ASP A 136 ? ? 56.37 13.68 31 1 LEU A 145 ? ? -43.59 163.84 32 1 LEU A 155 ? ? -95.60 40.46 33 1 HIS A 160 ? ? -6.92 -51.83 34 1 VAL A 178 ? ? -33.82 -77.68 35 1 ASP A 194 ? ? -58.20 52.81 36 1 SER A 195 ? ? 55.48 -138.03 37 1 THR A 196 ? ? 131.73 151.83 38 1 ILE A 198 ? ? -27.59 135.35 39 1 PHE A 200 ? ? 83.22 -17.28 40 1 PHE A 206 ? ? -44.07 -77.20 41 1 ARG A 207 ? ? -15.32 -58.13 42 1 PRO A 218 ? ? -58.50 96.41 43 1 ILE A 222 ? ? -85.88 -155.34 44 1 ASP A 227 ? ? -172.40 126.26 45 1 ILE A 229 ? ? -163.63 -53.98 46 1 GLU A 231 ? ? -68.34 -127.77 47 1 HIS A 232 ? ? 175.93 -18.88 48 1 GLN A 233 ? ? 12.82 65.05 49 1 LEU A 235 ? ? -156.90 -40.99 50 1 LEU A 240 ? ? -33.75 133.87 51 1 ILE A 248 ? ? -30.07 137.39 52 1 THR A 251 ? ? -137.02 -155.95 53 1 THR A 255 ? ? -60.40 15.10 54 1 GLU A 256 ? ? 57.72 8.85 55 1 VAL A 262 ? ? -169.35 4.77 56 1 ASP A 263 ? ? 166.05 131.74 57 1 ASP A 265 ? ? -110.05 69.53 58 1 VAL A 266 ? ? -24.96 -69.78 59 1 GLU A 267 ? ? -60.96 -72.56 60 1 ILE A 270 ? ? -109.84 -145.79 61 1 LEU A 271 ? ? 175.65 90.90 62 1 GLU A 278 ? ? 175.52 -8.75 63 1 GLN A 290 ? ? -104.48 -159.97 64 1 GLN A 291 ? ? 36.32 58.85 65 1 ARG A 297 ? ? 35.34 59.46 66 1 CYS A 306 ? ? -167.40 -153.19 67 1 ARG A 311 ? ? -176.82 139.89 68 1 GLN A 314 ? ? -75.23 -127.85 69 1 THR A 315 ? ? -160.92 116.85 70 1 ASP A 316 ? ? -27.52 112.55 71 1 ALA A 323 ? ? -64.73 82.19 72 1 ASP A 325 ? ? -174.62 -155.98 73 1 ASP A 327 ? ? -136.87 -35.39 74 1 ASN A 350 ? ? -119.80 69.33 75 1 PRO A 365 ? ? -47.27 154.76 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G C 17 ? ? 0.059 'SIDE CHAIN' 2 1 C C 20 ? ? 0.063 'SIDE CHAIN' 3 1 C C 47 ? ? 0.081 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C A 71 ? A A 71 2 1 Y 1 C C 72 ? A C 72 3 1 Y 1 C G 73 ? A G 73 4 1 Y 1 C C 74 ? A C 74 5 1 Y 1 C C 75 ? A C 75 6 1 Y 1 C A 76 ? A A 76 7 1 Y 1 A MET -11 ? B MET 1 8 1 Y 1 A ARG -10 ? B ARG 2 9 1 Y 1 A GLY -9 ? B GLY 3 10 1 Y 1 A SER -8 ? B SER 4 11 1 Y 1 A HIS -7 ? B HIS 5 12 1 Y 1 A HIS -6 ? B HIS 6 13 1 Y 1 A HIS -5 ? B HIS 7 14 1 Y 1 A HIS -4 ? B HIS 8 15 1 Y 1 A HIS -3 ? B HIS 9 16 1 Y 1 A HIS -2 ? B HIS 10 17 1 Y 1 A GLY -1 ? B GLY 11 18 1 Y 1 A SER 0 ? B SER 12 19 1 Y 1 A MET 1 ? B MET 13 20 1 Y 1 A SER 2 ? B SER 14 21 1 Y 1 A GLU 3 ? B GLU 15 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DET 'double helix' 2DET 'a-form double helix' 2DET 'parallel strands' 2DET 'hairpin loop' 2DET 'bulge loop' 2DET 'mismatched base pair' 2DET 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 3 1_555 A G 69 1_555 -2.914 0.709 0.071 25.993 2.609 -2.992 1 C_C3:G69_C C 3 ? C 69 ? ? ? 1 A C 4 1_555 A G 68 1_555 -1.140 0.099 -1.355 13.009 -7.085 -18.185 2 C_C4:G68_C C 4 ? C 68 ? ? ? 1 A C 6 1_555 A G 67 1_555 -0.076 -2.204 2.355 23.278 -1.741 0.565 3 C_C6:G67_C C 6 ? C 67 ? 19 1 1 A G 17 1_555 A U 55 1_555 0.165 6.119 -0.474 -8.392 -1.699 111.271 4 C_G17:U55_C C 17 ? C 55 ? ? 2 1 A A 58 1_555 A U 54 1_555 -4.123 -2.812 2.044 -9.654 15.659 -90.734 5 C_A58:U54_C C 58 ? C 54 ? 24 4 1 A C 61 1_555 A G 53 1_555 1.585 -0.913 0.853 9.014 -0.103 2.431 6 C_C61:G53_C C 61 ? C 53 ? 19 1 1 A C 62 1_555 A G 52 1_555 -0.990 -0.077 -0.985 15.012 -7.254 -4.371 7 C_C62:G52_C C 62 ? C 52 ? 19 1 1 A C 63 1_555 A G 51 1_555 0.285 0.132 -0.206 0.392 5.315 6.600 8 C_C63:G51_C C 63 ? C 51 ? 19 1 1 A U 65 1_555 A G 50 1_555 -1.533 0.147 0.379 56.568 5.129 20.186 9 C_U65:G50_C C 65 ? C 50 ? ? 1 1 A G 18 1_555 A C 56 1_555 0.106 -0.370 0.233 40.492 -36.833 6.015 10 C_G18:C56_C C 18 ? C 56 ? 19 1 1 A C 39 1_555 A C 33 1_555 -2.737 0.917 -0.884 12.714 -12.803 90.396 11 C_C38:C32_C C 38 ? C 32 ? ? ? 1 A G 40 1_555 A C 32 1_555 -0.601 -0.419 0.355 1.662 -4.852 -3.634 12 C_G39:C31_C C 39 ? C 31 ? 19 1 1 A G 41 1_555 A C 31 1_555 0.860 -0.255 0.428 2.183 -7.361 1.793 13 C_G40:C30_C C 40 ? C 30 ? 19 1 1 A C 42 1_555 A G 30 1_555 -0.572 -0.251 0.203 2.983 -2.809 2.019 14 C_C41:G29_C C 41 ? C 29 ? 19 1 1 A G 43 1_555 A C 29 1_555 -0.057 -0.135 -0.119 -3.724 -23.444 2.978 15 C_G42:C28_C C 42 ? C 28 ? 19 1 1 A G 44 1_555 A C 28 1_555 0.436 -0.167 0.095 -19.092 -16.492 -5.704 16 C_G43:C27_C C 43 ? C 27 ? 19 1 1 A U 45 1_555 A A 27 1_555 0.576 0.738 1.193 -29.212 5.396 -41.612 17 C_U44:A26_C C 44 ? C 26 ? ? ? 1 A G 10 1_555 A C 26 1_555 -1.113 -0.271 -0.098 -2.072 -10.136 1.484 18 C_G10:C25_C C 10 ? C 25 ? 19 1 1 A U 11 1_555 A A 25 1_555 -0.004 -0.355 -0.361 -6.756 -15.622 5.855 19 C_U11:A24_C C 11 ? C 24 ? 20 1 1 A C 12 1_555 A G 24 1_555 0.739 -0.332 0.457 -21.694 4.574 1.773 20 C_C12:G23_C C 12 ? C 23 ? 19 1 1 A U 13 1_555 A G 23 1_555 2.030 -0.345 -0.105 13.259 -3.683 4.621 21 C_U13:G22_C C 13 ? C 22 ? 28 1 1 A A 14 1_555 A A 22 1_555 -6.116 -0.720 0.544 6.515 -6.159 43.745 22 C_A14:A21_C C 14 ? C 21 ? ? 5 1 A C 20 1_555 A C 48 1_555 0.584 -2.823 0.336 -14.000 11.744 -120.822 23 C_C20:C47_C C 20 ? C 47 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 3 1_555 A G 69 1_555 A C 4 1_555 A G 68 1_555 -0.361 -2.953 3.850 9.496 0.233 33.007 -5.048 2.340 3.592 0.400 -16.298 34.310 1 CC_C3C4:G68G69_CC C 3 ? C 69 ? C 4 ? C 68 ? 1 A C 4 1_555 A G 68 1_555 A C 6 1_555 A G 67 1_555 1.743 -3.483 5.184 0.417 -2.965 45.498 -4.073 -2.190 5.404 -3.829 -0.539 45.591 2 CC_C4C6:G67G68_CC C 4 ? C 68 ? C 6 ? C 67 ? 1 A G 17 1_555 A U 55 1_555 A A 58 1_555 A U 54 1_555 -2.537 -2.441 -0.339 145.175 -62.636 -72.874 1.290 -1.157 0.886 33.058 76.621 -162.428 3 CC_G17A58:U54U55_CC C 17 ? C 55 ? C 58 ? C 54 ? 1 A A 58 1_555 A U 54 1_555 A C 61 1_555 A G 53 1_555 1.600 -2.399 3.195 9.627 -7.762 96.822 -1.464 -0.901 3.442 -5.173 -6.416 97.412 4 CC_A58C61:G53U54_CC C 58 ? C 54 ? C 61 ? C 53 ? 1 A C 61 1_555 A G 53 1_555 A C 62 1_555 A G 52 1_555 -1.003 -2.513 2.816 11.235 2.242 20.369 -6.783 5.345 1.745 5.785 -28.994 23.340 5 CC_C61C62:G52G53_CC C 61 ? C 53 ? C 62 ? C 52 ? 1 A C 62 1_555 A G 52 1_555 A C 63 1_555 A G 51 1_555 0.802 -1.747 3.846 -6.991 5.382 33.426 -3.868 -2.554 3.304 9.160 11.898 34.539 6 CC_C62C63:G51G52_CC C 62 ? C 52 ? C 63 ? C 51 ? 1 A C 63 1_555 A G 51 1_555 A U 65 1_555 A G 50 1_555 -0.935 -1.309 3.791 25.942 21.526 37.608 -3.119 3.001 1.878 27.603 -33.265 50.094 7 CC_C63U65:G50G51_CC C 63 ? C 51 ? C 65 ? C 50 ? 1 A C 39 1_555 A C 33 1_555 A G 40 1_555 A C 32 1_555 -2.515 -2.407 -2.977 118.658 -122.813 33.783 -2.238 0.265 -0.883 -63.759 -61.602 171.170 8 CC_C38G39:C31C32_CC C 38 ? C 32 ? C 39 ? C 31 ? 1 A G 40 1_555 A C 32 1_555 A G 41 1_555 A C 31 1_555 -0.133 -1.937 2.962 -0.085 2.973 43.074 -2.891 0.173 2.829 4.044 0.115 43.172 9 CC_G39G40:C30C31_CC C 39 ? C 31 ? C 40 ? C 30 ? 1 A G 41 1_555 A C 31 1_555 A C 42 1_555 A G 30 1_555 0.120 -1.663 3.124 1.392 2.043 25.357 -4.319 0.102 2.985 4.639 -3.161 25.475 10 CC_G40C41:G29C30_CC C 40 ? C 30 ? C 41 ? C 29 ? 1 A C 42 1_555 A G 30 1_555 A G 43 1_555 A C 29 1_555 0.585 -1.616 3.389 6.730 6.234 30.493 -4.098 0.174 3.064 11.529 -12.447 31.812 11 CC_C41G42:C28G29_CC C 41 ? C 29 ? C 42 ? C 28 ? 1 A G 43 1_555 A C 29 1_555 A G 44 1_555 A C 28 1_555 -0.481 -1.820 3.713 -1.059 6.729 36.849 -3.797 0.599 3.353 10.534 1.658 37.452 12 CC_G42G43:C27C28_CC C 42 ? C 28 ? C 43 ? C 27 ? 1 A G 44 1_555 A C 28 1_555 A U 45 1_555 A A 27 1_555 -1.731 -1.845 3.477 -2.065 2.045 39.823 -2.953 2.283 3.463 2.998 3.026 39.924 13 CC_G43U44:A26C27_CC C 43 ? C 27 ? C 44 ? C 26 ? 1 A U 45 1_555 A A 27 1_555 A G 10 1_555 A C 26 1_555 -1.170 -3.458 2.449 19.518 0.955 50.721 -3.841 2.106 1.855 1.071 -21.876 54.121 14 CC_U44G10:C25A26_CC C 44 ? C 26 ? C 10 ? C 25 ? 1 A G 10 1_555 A C 26 1_555 A U 11 1_555 A A 25 1_555 0.130 -1.154 3.304 4.683 9.656 41.423 -2.528 0.279 2.972 13.383 -6.490 42.732 15 CC_G10U11:A24C25_CC C 10 ? C 25 ? C 11 ? C 24 ? 1 A U 11 1_555 A A 25 1_555 A C 12 1_555 A G 24 1_555 -0.453 -0.820 3.640 -6.815 16.421 38.595 -2.950 -0.126 3.095 23.393 9.708 42.351 16 CC_U11C12:G23A24_CC C 11 ? C 24 ? C 12 ? C 23 ? 1 A C 12 1_555 A G 24 1_555 A U 13 1_555 A G 23 1_555 1.237 -2.354 2.353 3.556 -4.896 22.822 -4.408 -2.045 2.942 -12.102 -8.790 23.601 17 CC_C12U13:G22G23_CC C 12 ? C 23 ? C 13 ? C 22 ? 1 A U 13 1_555 A G 23 1_555 A A 14 1_555 A A 22 1_555 2.744 -3.304 2.925 -6.378 6.888 3.971 -18.923 -15.745 -2.808 49.251 45.604 10.191 18 CC_U13A14:A21G22_CC C 13 ? C 22 ? C 14 ? C 21 ? 1 A A 14 1_555 A A 22 1_555 A C 20 1_555 A C 48 1_555 0.573 -2.187 3.881 4.783 6.365 -145.412 1.110 0.327 3.911 -3.333 2.505 -145.498 19 CC_A14C20:C47A21_CC C 14 ? C 21 ? C 20 ? C 47 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SULFATE ION' _pdbx_entity_nonpoly.comp_id SO4 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id SO4 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 5001 _pdbx_nonpoly_scheme.auth_seq_num 5001 _pdbx_nonpoly_scheme.pdb_mon_id SO4 _pdbx_nonpoly_scheme.auth_mon_id SO4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . #